Wall clock time and date at job start Tue Mar 31 2020 17:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00409 * 2 1 4 4 O 1.20823 * 119.99661 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99887 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46860 * 180.02562 * 5 3 2 7 7 C 1.36743 * 119.99949 * 270.00088 * 6 5 3 8 8 H 1.07996 * 120.00073 * 198.45743 * 7 6 5 9 9 C 1.39097 * 120.00063 * 18.46114 * 7 6 5 10 10 N 1.31345 * 119.99909 * 6.05437 * 9 7 6 11 11 Si 1.86799 * 120.00053 * 186.05917 * 9 7 6 12 12 H 1.48497 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47433 * 119.99558 * 11 9 7 14 14 H 1.48502 * 109.47118 * 239.99746 * 11 9 7 15 15 C 1.34767 * 119.99888 * 90.00135 * 6 5 3 16 16 O 1.21784 * 120.00220 * 354.67015 * 15 6 5 17 17 C 1.41804 * 120.00257 * 174.66959 * 15 6 5 18 18 C 1.35133 * 120.00450 * 186.74799 * 17 15 6 19 19 C 1.46948 * 119.99795 * 10.25845 * 18 17 15 20 20 C 1.39986 * 120.11249 * 44.16559 * 19 18 17 21 21 C 1.37713 * 119.97057 * 180.02562 * 20 19 18 22 22 C 1.38899 * 120.25979 * 359.96816 * 21 20 19 23 23 C 1.39607 * 120.09880 * 0.02934 * 22 21 20 24 24 C 1.38074 * 120.00471 * 359.97438 * 23 22 21 25 25 O 1.36534 * 108.58657 * 179.97438 * 23 22 21 26 26 C 1.43980 * 105.45723 * 17.32544 * 25 23 22 27 27 O 1.36393 * 131.33221 * 180.02562 * 22 21 20 28 28 H 1.09003 * 109.46795 * 299.99841 * 1 2 3 29 29 H 1.09005 * 109.46811 * 59.99393 * 1 2 3 30 30 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47034 * 60.00278 * 5 3 2 32 32 H 1.09000 * 109.47563 * 300.00097 * 5 3 2 33 33 H 0.97008 * 119.99811 * 185.00448 * 10 9 7 34 34 H 1.08003 * 119.99363 * 6.75547 * 17 15 6 35 35 H 1.07999 * 120.00027 * 190.25286 * 18 17 15 36 36 H 1.07997 * 120.01620 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.87413 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.05163 * 179.97438 * 24 23 22 39 39 H 1.08993 * 110.56125 * 214.20471 * 26 25 23 40 40 H 1.09003 * 110.56205 * 91.35547 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1761 3.3355 -1.1829 8 1 4.7545 4.2472 -1.2066 9 6 3.6288 2.8285 -2.3569 10 7 2.8279 1.7884 -2.3124 11 14 4.0327 3.6268 -3.9967 12 1 4.9502 4.7734 -3.7763 13 1 4.6873 2.6320 -4.8837 14 1 2.7813 4.1102 -4.6335 15 6 4.1725 3.3255 1.1684 16 8 3.9066 2.7729 2.2206 17 6 4.6827 4.6485 1.1717 18 6 5.0024 5.2466 2.3405 19 6 5.0380 4.4613 3.5821 20 6 5.6444 3.1997 3.5980 21 6 5.6756 2.4661 4.7630 22 6 5.1077 2.9730 5.9248 23 6 4.5012 4.2304 5.9167 24 6 4.4656 4.9724 4.7528 25 8 4.0260 4.4924 7.1696 26 6 4.7054 3.5674 8.0389 27 8 5.0110 2.4522 7.1817 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7804 -0.8892 32 1 3.9558 0.7807 0.8908 33 1 2.5041 1.3901 -3.1355 34 1 4.8157 5.1782 0.2399 35 1 5.2319 6.3017 2.3622 36 1 6.0876 2.8020 2.6970 37 1 6.1442 1.4930 4.7736 38 1 3.9962 5.9451 4.7456 39 1 4.0513 3.2566 8.8535 40 1 5.6209 4.0113 8.4299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491879341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:44 Heat of formation + Delta-G solvation = -113.349555 kcal Electronic energy + Delta-G solvation = -28926.487454 eV Core-core repulsion = 24674.304147 eV Total energy + Delta-G solvation = -4252.183307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.00108 -41.41640 -40.48342 -38.76148 -37.21877 -37.21080 -36.44939 -34.25291 -33.47418 -31.51050 -30.79084 -29.64891 -27.92408 -26.90516 -26.43135 -24.70110 -23.77128 -22.85296 -21.65616 -20.80122 -19.10328 -18.81746 -18.56830 -18.36422 -18.13827 -17.64828 -17.26130 -17.06551 -16.81763 -16.18487 -15.97588 -15.54528 -15.37625 -14.99821 -14.77544 -14.72087 -14.47036 -14.19532 -14.07817 -13.93134 -13.77164 -13.50954 -13.26917 -13.08377 -13.00249 -12.79424 -12.55609 -12.36273 -12.05151 -11.95626 -11.80952 -11.55218 -11.42855 -10.93746 -10.35010 -10.30246 -9.94058 -9.56621 -8.52870 -8.34207 -5.93483 -0.23261 0.42529 0.82827 1.48913 1.50727 1.62742 1.83415 1.90552 2.03751 2.34825 2.60571 2.64993 2.77702 3.03676 3.27630 3.60365 3.86407 3.93036 4.12838 4.19827 4.28473 4.30205 4.34780 4.35426 4.39957 4.43655 4.57713 4.64775 4.71860 4.79415 4.87918 5.09463 5.13180 5.24340 5.35262 5.41654 5.51615 5.59443 5.67134 5.76445 5.81594 6.23865 6.35003 7.07239 7.30714 7.51893 7.94278 8.68372 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.003673 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.370341 B = 7621.051202 C = 8827.901306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.379 6.379 3 C 0.495 3.505 4 O -0.548 6.548 5 C 0.158 3.842 6 N -0.431 5.431 7 C -0.336 4.336 8 H 0.125 0.875 9 C -0.010 4.010 10 N -0.905 5.905 11 Si 1.002 2.998 12 H -0.249 1.249 13 H -0.275 1.275 14 H -0.295 1.295 15 C 0.472 3.528 16 O -0.613 6.613 17 C -0.186 4.186 18 C -0.041 4.041 19 C -0.054 4.054 20 C -0.018 4.018 21 C -0.126 4.126 22 C 0.020 3.980 23 C -0.005 4.005 24 C -0.091 4.091 25 O -0.327 6.327 26 C 0.205 3.795 27 O -0.327 6.327 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.272 0.728 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 2.559 9.369 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.339 3.661 4 O -0.437 6.437 5 C 0.033 3.967 6 N -0.147 5.147 7 C -0.463 4.463 8 H 0.142 0.858 9 C -0.210 4.210 10 N -0.546 5.546 11 Si 0.826 3.174 12 H -0.172 1.172 13 H -0.200 1.200 14 H -0.222 1.222 15 C 0.267 3.733 16 O -0.503 6.503 17 C -0.206 4.206 18 C -0.062 4.062 19 C -0.054 4.054 20 C -0.037 4.037 21 C -0.145 4.145 22 C -0.024 4.024 23 C -0.048 4.048 24 C -0.110 4.110 25 O -0.244 6.244 26 C 0.094 3.906 27 O -0.244 6.244 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.190 0.810 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.278 2.406 9.862 11.441 hybrid contribution -0.766 -0.052 -0.963 1.232 sum 4.512 2.354 8.899 10.251 Atomic orbital electron populations 1.23232 0.76591 1.04639 1.00897 1.86418 1.23789 1.34210 1.85198 1.23974 0.92604 0.80532 0.68989 1.90466 1.67442 1.37769 1.47989 1.20574 0.86921 0.85822 1.03421 1.43712 1.56023 1.08595 1.06356 1.20304 1.31584 1.10315 0.84085 0.85751 1.26206 0.93984 0.97186 1.03598 1.69630 1.31450 1.24140 1.29335 0.84711 0.77534 0.78676 0.76458 1.17185 1.20046 1.22176 1.17740 0.84109 0.88265 0.83174 1.90744 1.58763 1.69814 1.30937 1.22247 1.02873 0.95496 0.99973 1.22454 0.94883 0.99710 0.89147 1.18768 0.99024 0.94959 0.92696 1.20878 0.95474 0.92042 0.95293 1.20002 1.03120 1.01932 0.89456 1.20038 1.02060 0.92773 0.87536 1.19647 1.01664 0.95606 0.87933 1.20214 1.01792 1.00504 0.88492 1.87280 1.63236 1.58669 1.15247 1.26071 0.98395 0.76135 0.89990 1.87238 1.87773 1.33872 1.15532 0.93492 0.93792 0.84929 0.85792 0.89759 0.91764 0.83700 0.80956 0.85905 0.84213 0.83390 0.82473 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.62 16 2 O -0.38 -16.85 10.56 -51.41 -0.54 -17.40 16 3 C 0.50 25.29 5.82 71.24 0.41 25.70 16 4 O -0.55 -31.66 15.76 21.97 0.35 -31.31 16 5 C 0.16 7.63 5.21 85.63 0.45 8.08 16 6 N -0.43 -20.95 2.10 -649.50 -1.37 -22.32 16 7 C -0.34 -15.94 9.19 84.13 0.77 -15.16 16 8 H 0.13 5.29 5.82 -2.91 -0.02 5.27 16 9 C -0.01 -0.46 5.24 84.97 0.45 -0.01 16 10 N -0.91 -45.97 8.16 21.69 0.18 -45.79 16 11 Si 1.00 37.92 29.56 68.60 2.03 39.94 16 12 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 13 H -0.28 -10.13 7.11 99.48 0.71 -9.43 16 14 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 15 C 0.47 21.79 6.48 85.12 0.55 22.34 16 16 O -0.61 -30.29 11.55 -4.62 -0.05 -30.34 16 17 C -0.19 -6.88 9.06 22.44 0.20 -6.68 16 18 C -0.04 -1.26 9.80 23.84 0.23 -1.02 16 19 C -0.05 -1.83 4.50 -20.15 -0.09 -1.92 16 20 C -0.02 -0.64 6.58 22.57 0.15 -0.49 16 21 C -0.13 -4.28 10.04 22.30 0.22 -4.05 16 22 C 0.02 0.68 7.16 22.76 0.16 0.85 16 23 C 0.00 -0.16 7.13 22.56 0.16 0.00 16 24 C -0.09 -2.95 9.80 22.65 0.22 -2.73 16 25 O -0.33 -9.66 11.41 -76.46 -0.87 -10.53 16 26 C 0.20 4.40 8.88 113.37 1.01 5.41 16 27 O -0.33 -9.81 11.39 -74.80 -0.85 -10.66 16 28 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.04 1.64 8.13 -2.38 -0.02 1.62 16 30 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.12 5.96 6.42 -2.39 -0.02 5.95 16 32 H 0.08 3.85 7.50 -2.39 -0.02 3.83 16 33 H 0.27 13.28 8.31 -92.70 -0.77 12.51 16 34 H 0.15 4.91 6.05 -2.91 -0.02 4.89 16 35 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.12 4.41 7.01 -2.91 -0.02 4.39 16 37 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -70.87 343.25 6.06 -64.81 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 1.09 Total: 30.67 kcal Atomic # 6 Polarization: 26.84 SS G_CDS: 6.10 Total: 32.94 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -1.19 Total: -68.11 kcal Atomic # 8 Polarization: -98.27 SS G_CDS: -1.97 Total: -100.24 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.94 kcal Total: -70.87 6.06 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491879341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.540 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds