Wall clock time and date at job start Tue Mar 31 2020 16:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00452 * 2 1 4 4 O 1.20829 * 119.99708 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00312 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.99805 * 58.90778 * 5 3 2 7 7 C 1.54340 * 109.99368 * 297.86861 * 5 3 2 8 8 C 1.55149 * 103.01958 * 218.66511 * 7 5 3 9 9 H 1.09002 * 111.00645 * 277.22684 * 8 7 5 10 10 O 1.42898 * 111.00297 * 153.37940 * 8 7 5 11 11 C 1.54914 * 101.58447 * 35.30530 * 8 7 5 12 12 N 1.47024 * 109.88190 * 179.97438 * 5 3 2 13 13 S 1.65598 * 125.65164 * 298.39261 * 12 5 3 14 14 O 1.42095 * 104.27547 * 153.64640 * 13 12 5 15 15 O 1.42106 * 104.27512 * 25.79225 * 13 12 5 16 16 C 1.81392 * 104.45045 * 269.71989 * 13 12 5 17 17 C 1.53001 * 109.46900 * 176.34785 * 16 13 12 18 18 C 1.50699 * 115.54937 * 65.04824 * 17 16 13 19 19 H 1.08001 * 119.99984 * 264.75143 * 18 17 16 20 20 C 1.37875 * 120.00173 * 84.75646 * 18 17 16 21 21 N 1.31515 * 119.99965 * 353.93981 * 20 18 17 22 22 Si 1.86802 * 120.00057 * 173.94530 * 20 18 17 23 23 H 1.48502 * 109.47268 * 89.99544 * 22 20 18 24 24 H 1.48492 * 109.47126 * 209.99824 * 22 20 18 25 25 H 1.48504 * 109.46989 * 329.99277 * 22 20 18 26 26 C 1.52997 * 117.50129 * 279.37432 * 17 16 13 27 27 C 1.53004 * 117.50041 * 210.71454 * 17 16 13 28 28 H 1.08989 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46883 * 300.00595 * 1 2 3 30 30 H 1.08999 * 109.46776 * 59.99678 * 1 2 3 31 31 H 1.08995 * 110.84677 * 100.19603 * 7 5 3 32 32 H 1.09006 * 110.51083 * 336.97508 * 7 5 3 33 33 H 0.96701 * 114.00163 * 186.34423 * 10 8 7 34 34 H 1.08997 * 110.36195 * 204.15228 * 11 8 7 35 35 H 1.08992 * 110.36393 * 81.82998 * 11 8 7 36 36 H 1.09003 * 109.47229 * 56.35069 * 16 13 12 37 37 H 1.09001 * 109.47620 * 296.34951 * 16 13 12 38 38 H 0.96995 * 119.99628 * 185.04162 * 21 20 18 39 39 H 1.08997 * 117.49883 * 0.02562 * 26 17 16 40 40 H 1.08996 * 117.50357 * 145.02176 * 26 17 16 41 41 H 1.09003 * 117.50098 * 214.98105 * 27 17 16 42 42 H 1.09001 * 117.49589 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9667 0.7658 -0.8763 7 6 4.1284 0.6256 1.2831 8 6 5.3097 1.5587 1.6585 9 1 6.2052 1.3025 1.0922 10 8 5.5663 1.5201 3.0637 11 6 4.7603 2.9430 1.2321 12 7 3.9934 2.6816 -0.0002 13 16 3.6620 3.7902 -1.1848 14 8 3.6953 5.0417 -0.5126 15 8 2.4661 3.3134 -1.7863 16 6 5.0546 3.6500 -2.3385 17 6 4.8181 4.5703 -3.5376 18 6 4.7987 6.0456 -3.2308 19 1 3.8591 6.5483 -3.0553 20 6 5.9804 6.7536 -3.1743 21 7 7.1303 6.1225 -3.2693 22 14 5.9482 8.6093 -2.9625 23 1 5.9679 8.9428 -1.5155 24 1 7.1376 9.2037 -3.6236 25 1 4.7136 9.1566 -3.5800 26 6 3.8874 4.0662 -4.6424 27 6 5.3969 4.1368 -4.8860 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.4839 -0.3851 1.0826 32 1 3.3748 0.6214 2.0708 33 1 6.2300 2.1580 3.3600 34 1 5.5811 3.6307 1.0292 35 1 4.1082 3.3471 2.0064 36 1 5.1389 2.6192 -2.6827 37 1 5.9757 3.9408 -1.8334 38 1 7.9615 6.6094 -3.1565 39 1 3.4432 3.0791 -4.5147 40 1 3.2613 4.8016 -5.1475 41 1 5.7633 4.9186 -5.5513 42 1 5.9466 3.1961 -4.9186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565235325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:38 Heat of formation + Delta-G solvation = -162.213709 kcal Electronic energy + Delta-G solvation = -28645.365007 eV Core-core repulsion = 24526.506743 eV Total energy + Delta-G solvation = -4118.858264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -40.62442 -38.76004 -36.78718 -36.58225 -36.11130 -35.57987 -35.01606 -32.06486 -30.72208 -29.35307 -28.20507 -27.42800 -25.48939 -23.67406 -21.61390 -21.25227 -21.02056 -19.57105 -18.61753 -18.15057 -17.35582 -17.11179 -16.56483 -16.38897 -15.89494 -15.72747 -15.04150 -14.85093 -14.52166 -14.22870 -13.84602 -13.79788 -13.46118 -13.27787 -13.16414 -13.08773 -12.48347 -12.13070 -12.00123 -11.86225 -11.79308 -11.34389 -11.24005 -11.15626 -11.06804 -11.01751 -10.95073 -10.69073 -10.61112 -10.54109 -10.41971 -10.17779 -10.11457 -9.73195 -9.08166 -8.98641 -8.58761 -8.11554 -6.16326 -4.26828 0.90647 2.32893 2.61132 3.18903 3.29629 3.35003 3.40863 3.87975 4.14241 4.35869 4.38173 4.62019 4.77592 4.81789 4.94644 5.00291 5.10131 5.10818 5.16132 5.17725 5.19970 5.42752 5.50536 5.54161 5.59135 5.66862 5.82171 5.87599 6.00593 6.22002 6.32888 6.39899 6.43981 6.56677 6.69348 6.95426 7.20341 7.36795 7.37422 7.78511 7.87297 8.17499 8.79120 9.44471 10.91395 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.004649 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.701001 B = 6021.780230 C = 6882.989256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.439 3.561 4 O -0.462 6.462 5 C 0.165 3.835 6 H 0.116 0.884 7 C -0.107 4.107 8 C 0.093 3.907 9 H 0.084 0.916 10 O -0.557 6.557 11 C 0.088 3.912 12 N -0.999 5.999 13 S 2.615 3.385 14 O -0.937 6.937 15 O -0.947 6.947 16 C -0.555 4.555 17 C 0.042 3.958 18 C -0.514 4.514 19 H 0.068 0.932 20 C 0.081 3.919 21 N -0.876 5.876 22 Si 0.891 3.109 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.269 1.269 26 C -0.209 4.209 27 C -0.138 4.138 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.385 0.615 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -14.616 8.772 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.277 3.723 4 O -0.344 6.344 5 C 0.056 3.944 6 H 0.133 0.867 7 C -0.145 4.145 8 C 0.032 3.968 9 H 0.102 0.898 10 O -0.363 6.363 11 C -0.038 4.038 12 N -0.835 5.835 13 S 2.713 3.287 14 O -0.927 6.927 15 O -0.937 6.937 16 C -0.688 4.688 17 C 0.039 3.961 18 C -0.551 4.551 19 H 0.086 0.914 20 C -0.123 4.123 21 N -0.512 5.512 22 Si 0.718 3.282 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.246 4.246 27 C -0.177 4.177 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.151 0.849 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.733 -14.100 8.649 16.957 hybrid contribution 0.935 1.207 -0.131 1.533 sum -2.799 -12.893 8.518 15.704 Atomic orbital electron populations 1.23236 0.76473 1.03285 1.02784 1.86440 1.23325 1.33277 1.84854 1.24003 0.92193 0.81953 0.74198 1.90757 1.66227 1.35934 1.41516 1.20697 0.87291 0.84479 1.01936 0.86679 1.22526 0.97705 0.99266 0.95038 1.23019 0.97362 0.94021 0.82400 0.89809 1.86472 1.64625 1.63107 1.22071 1.22733 0.95957 0.97912 0.87201 1.59254 1.68003 1.21258 1.34958 1.05330 0.76714 0.72617 0.74013 1.93536 1.87216 1.39607 1.72376 1.93548 1.42467 1.80368 1.77331 1.30078 1.18816 1.05827 1.14081 1.18290 1.00078 0.93166 0.84561 1.20536 0.93761 0.90324 1.50461 0.91355 1.24948 0.95257 0.98753 0.93368 1.69980 0.97274 1.36314 1.47640 0.86575 0.77814 0.84993 0.78797 1.20014 1.21039 1.19386 1.23206 0.93647 1.00913 1.06865 1.22548 0.93169 1.00427 1.01584 0.88282 0.92127 0.91620 0.88016 0.89158 0.76675 0.89298 0.90357 0.88424 0.84926 0.92750 0.90707 0.89482 0.89471 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.70 10.54 -39.24 -0.41 -5.11 16 3 C 0.44 6.92 6.57 36.00 0.24 7.15 16 4 O -0.46 -9.24 13.47 -26.58 -0.36 -9.60 16 5 C 0.17 2.17 3.57 -68.10 -0.24 1.93 16 6 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.11 -1.06 6.19 -24.89 -0.15 -1.21 16 8 C 0.09 0.90 4.43 -24.58 -0.11 0.79 16 9 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 10 O -0.56 -5.12 13.47 -35.23 -0.47 -5.59 16 11 C 0.09 1.15 6.62 -2.50 -0.02 1.13 16 12 N -1.00 -16.02 3.06 -105.59 -0.32 -16.34 16 13 S 2.61 55.49 5.15 -107.50 -0.55 54.94 16 14 O -0.94 -23.37 17.13 -57.54 -0.99 -24.35 16 15 O -0.95 -21.90 14.60 -66.94 -0.98 -22.88 16 16 C -0.56 -11.58 6.03 37.16 0.22 -11.36 16 17 C 0.04 1.01 1.33 -155.66 -0.21 0.81 16 18 C -0.51 -14.14 8.06 -34.44 -0.28 -14.42 16 19 H 0.07 1.95 7.82 -52.49 -0.41 1.53 16 20 C 0.08 2.22 5.39 -17.82 -0.10 2.12 16 21 N -0.88 -23.84 12.93 55.43 0.72 -23.13 16 22 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.21 -4.62 9.96 -26.70 -0.27 -4.88 16 27 C -0.14 -3.13 9.44 -26.69 -0.25 -3.38 16 28 H 0.10 0.68 8.14 -51.94 -0.42 0.26 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 33 H 0.39 2.00 9.11 45.56 0.42 2.42 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 37 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 38 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -36.83 366.38 -8.42 -45.25 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.45 Total: 4.76 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.09 Total: -19.87 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.39 Total: -39.47 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -3.21 Total: -67.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 55.49 SS G_CDS: -0.55 Total: 54.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.83 -8.42 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565235325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.963 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds