Wall clock time and date at job start Tue Mar 31 2020 16:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00452 * 2 1 4 4 O 1.20829 * 119.99708 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00312 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.99805 * 58.90778 * 5 3 2 7 7 C 1.54340 * 109.99368 * 297.86861 * 5 3 2 8 8 C 1.55149 * 103.01958 * 218.66511 * 7 5 3 9 9 H 1.09002 * 111.00645 * 277.22684 * 8 7 5 10 10 O 1.42898 * 111.00297 * 153.37940 * 8 7 5 11 11 C 1.54914 * 101.58447 * 35.30530 * 8 7 5 12 12 N 1.47024 * 109.88190 * 179.97438 * 5 3 2 13 13 S 1.65598 * 125.65164 * 298.39261 * 12 5 3 14 14 O 1.42095 * 104.27547 * 153.64640 * 13 12 5 15 15 O 1.42106 * 104.27512 * 25.79225 * 13 12 5 16 16 C 1.81392 * 104.45045 * 269.71989 * 13 12 5 17 17 C 1.53001 * 109.46900 * 176.34785 * 16 13 12 18 18 C 1.50699 * 115.54937 * 65.04824 * 17 16 13 19 19 H 1.08001 * 119.99984 * 264.75143 * 18 17 16 20 20 C 1.37875 * 120.00173 * 84.75646 * 18 17 16 21 21 N 1.31515 * 119.99965 * 353.93981 * 20 18 17 22 22 Si 1.86802 * 120.00057 * 173.94530 * 20 18 17 23 23 H 1.48502 * 109.47268 * 89.99544 * 22 20 18 24 24 H 1.48492 * 109.47126 * 209.99824 * 22 20 18 25 25 H 1.48504 * 109.46989 * 329.99277 * 22 20 18 26 26 C 1.52997 * 117.50129 * 279.37432 * 17 16 13 27 27 C 1.53004 * 117.50041 * 210.71454 * 17 16 13 28 28 H 1.08989 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46883 * 300.00595 * 1 2 3 30 30 H 1.08999 * 109.46776 * 59.99678 * 1 2 3 31 31 H 1.08995 * 110.84677 * 100.19603 * 7 5 3 32 32 H 1.09006 * 110.51083 * 336.97508 * 7 5 3 33 33 H 0.96701 * 114.00163 * 186.34423 * 10 8 7 34 34 H 1.08997 * 110.36195 * 204.15228 * 11 8 7 35 35 H 1.08992 * 110.36393 * 81.82998 * 11 8 7 36 36 H 1.09003 * 109.47229 * 56.35069 * 16 13 12 37 37 H 1.09001 * 109.47620 * 296.34951 * 16 13 12 38 38 H 0.96995 * 119.99628 * 185.04162 * 21 20 18 39 39 H 1.08997 * 117.49883 * 0.02562 * 26 17 16 40 40 H 1.08996 * 117.50357 * 145.02176 * 26 17 16 41 41 H 1.09003 * 117.50098 * 214.98105 * 27 17 16 42 42 H 1.09001 * 117.49589 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9667 0.7658 -0.8763 7 6 4.1284 0.6256 1.2831 8 6 5.3097 1.5587 1.6585 9 1 6.2052 1.3025 1.0922 10 8 5.5663 1.5201 3.0637 11 6 4.7603 2.9430 1.2321 12 7 3.9934 2.6816 -0.0002 13 16 3.6620 3.7902 -1.1848 14 8 3.6953 5.0417 -0.5126 15 8 2.4661 3.3134 -1.7863 16 6 5.0546 3.6500 -2.3385 17 6 4.8181 4.5703 -3.5376 18 6 4.7987 6.0456 -3.2308 19 1 3.8591 6.5483 -3.0553 20 6 5.9804 6.7536 -3.1743 21 7 7.1303 6.1225 -3.2693 22 14 5.9482 8.6093 -2.9625 23 1 5.9679 8.9428 -1.5155 24 1 7.1376 9.2037 -3.6236 25 1 4.7136 9.1566 -3.5800 26 6 3.8874 4.0662 -4.6424 27 6 5.3969 4.1368 -4.8860 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.4839 -0.3851 1.0826 32 1 3.3748 0.6214 2.0708 33 1 6.2300 2.1580 3.3600 34 1 5.5811 3.6307 1.0292 35 1 4.1082 3.3471 2.0064 36 1 5.1389 2.6192 -2.6827 37 1 5.9757 3.9408 -1.8334 38 1 7.9615 6.6094 -3.1565 39 1 3.4432 3.0791 -4.5147 40 1 3.2613 4.8016 -5.1475 41 1 5.7633 4.9186 -5.5513 42 1 5.9466 3.1961 -4.9186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565235325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:34 Heat of formation + Delta-G solvation = -191.058897 kcal Electronic energy + Delta-G solvation = -28646.615828 eV Core-core repulsion = 24526.506743 eV Total energy + Delta-G solvation = -4120.109085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -41.74714 -39.70322 -38.59845 -38.03937 -37.47788 -36.75228 -36.51918 -34.10820 -31.74698 -30.31463 -29.88585 -28.32805 -27.52104 -24.73007 -23.01708 -22.50875 -22.13976 -21.35508 -19.99012 -19.21231 -18.79052 -18.32960 -18.08384 -17.53261 -17.12074 -16.99886 -16.68861 -16.60138 -16.04976 -15.58081 -15.19854 -14.94092 -14.77218 -14.47493 -14.25270 -14.21574 -13.78545 -13.69353 -13.49591 -13.13451 -13.08313 -12.92709 -12.89024 -12.88207 -12.61285 -12.61092 -12.45995 -12.25120 -12.00360 -11.91661 -11.75058 -11.65607 -11.46346 -11.02601 -10.92319 -10.57124 -10.33240 -9.86794 -8.21921 -6.36258 -0.68493 1.16937 1.35863 1.38475 1.47115 1.54713 1.87666 2.37738 3.00581 3.02114 3.05762 3.10371 3.36650 3.54543 3.68798 3.82564 3.93422 3.94821 4.18290 4.22802 4.30921 4.32287 4.35046 4.45233 4.49362 4.56642 4.69906 4.76006 4.77955 4.81888 4.95054 4.95499 5.08285 5.16812 5.23058 5.35360 5.43659 5.57421 5.69026 6.19804 6.68759 6.73097 6.87243 7.35806 8.85179 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.004649 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.701001 B = 6021.780230 C = 6882.989256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.435 3.565 4 O -0.516 6.516 5 C 0.154 3.846 6 H 0.152 0.848 7 C -0.099 4.099 8 C 0.109 3.891 9 H 0.114 0.886 10 O -0.566 6.566 11 C 0.075 3.925 12 N -1.000 6.000 13 S 2.625 3.375 14 O -0.990 6.990 15 O -0.973 6.973 16 C -0.545 4.545 17 C 0.007 3.993 18 C -0.535 4.535 19 H 0.041 0.959 20 C 0.046 3.954 21 N -0.889 5.889 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.269 1.269 25 H -0.273 1.273 26 C -0.200 4.200 27 C -0.130 4.130 28 H 0.142 0.858 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.267 0.733 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 -17.470 9.129 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.275 3.725 4 O -0.403 6.403 5 C 0.046 3.954 6 H 0.169 0.831 7 C -0.138 4.138 8 C 0.048 3.952 9 H 0.132 0.868 10 O -0.374 6.374 11 C -0.050 4.050 12 N -0.838 5.838 13 S 2.726 3.274 14 O -0.981 6.981 15 O -0.964 6.964 16 C -0.678 4.678 17 C 0.004 3.996 18 C -0.573 4.573 19 H 0.060 0.940 20 C -0.157 4.157 21 N -0.525 5.525 22 Si 0.757 3.243 23 H -0.203 1.203 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.238 4.238 27 C -0.169 4.169 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.320 -16.963 9.009 19.347 hybrid contribution 0.421 2.030 -0.188 2.081 sum -1.899 -14.933 8.821 17.448 Atomic orbital electron populations 1.23531 0.75212 1.05799 1.01983 1.86442 1.24562 1.31749 1.84065 1.24680 0.93413 0.81825 0.72558 1.90745 1.67556 1.37729 1.44311 1.21266 0.85762 0.82991 1.05342 0.83118 1.22625 0.97364 1.00877 0.92894 1.22975 0.98152 0.91042 0.83009 0.86818 1.86442 1.65555 1.63709 1.21709 1.23034 0.95527 1.00774 0.85663 1.58680 1.68333 1.22158 1.34594 1.04581 0.76449 0.72155 0.74246 1.93461 1.87895 1.43084 1.73625 1.93505 1.43977 1.80640 1.78254 1.29889 1.17895 1.07424 1.12579 1.18427 1.02339 0.92401 0.86398 1.20661 0.92902 0.92649 1.51054 0.94028 1.25451 0.95186 1.01672 0.93400 1.69997 0.97390 1.37211 1.47887 0.85958 0.78107 0.81703 0.78554 1.20267 1.19327 1.19817 1.23245 0.93478 1.01745 1.05299 1.22518 0.93647 1.00874 0.99833 0.84035 0.92378 0.93119 0.84009 0.90126 0.74675 0.89126 0.91994 0.84237 0.85447 0.92370 0.88277 0.90321 0.91454 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.35 -8.47 10.54 -51.36 -0.54 -9.01 16 3 C 0.43 13.28 6.57 71.24 0.47 13.75 16 4 O -0.52 -21.13 13.47 29.44 0.40 -20.74 16 5 C 0.15 3.67 3.57 44.60 0.16 3.83 16 6 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 7 C -0.10 -1.60 6.19 31.79 0.20 -1.40 16 8 C 0.11 1.75 4.43 31.99 0.14 1.89 16 9 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 10 O -0.57 -8.66 13.47 -148.98 -2.01 -10.67 16 11 C 0.08 1.90 6.62 86.85 0.58 2.47 16 12 N -1.00 -31.04 3.06 -487.98 -1.49 -32.53 16 13 S 2.63 112.33 5.15 -56.49 -0.29 112.03 16 14 O -0.99 -51.54 17.13 -127.65 -2.19 -53.72 16 15 O -0.97 -45.63 14.60 -118.66 -1.73 -47.36 16 16 C -0.54 -22.00 6.03 71.98 0.43 -21.57 16 17 C 0.01 0.32 1.33 -52.93 -0.07 0.25 16 18 C -0.54 -30.13 8.06 25.60 0.21 -29.93 16 19 H 0.04 2.49 7.82 -2.91 -0.02 2.46 16 20 C 0.05 2.53 5.39 84.65 0.46 2.99 16 21 N -0.89 -48.07 12.93 21.45 0.28 -47.80 16 22 Si 0.93 44.29 29.55 68.60 2.03 46.32 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 26 C -0.20 -8.67 9.96 30.62 0.30 -8.37 16 27 C -0.13 -5.69 9.44 30.62 0.29 -5.40 16 28 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.17 8.13 -2.39 -0.02 1.16 16 30 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.49 7.84 -2.38 -0.02 1.47 16 33 H 0.40 3.08 9.11 -74.06 -0.67 2.40 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.14 4.32 8.09 -2.39 -0.02 4.30 16 37 H 0.13 5.29 8.14 -2.39 -0.02 5.28 16 38 H 0.27 13.65 8.32 -92.71 -0.77 12.88 16 39 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -83.12 366.38 -0.83 -83.95 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.36 Total: 19.26 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.36 Total: -39.74 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.21 Total: -80.33 kcal Atomic # 8 Polarization: -135.43 SS G_CDS: -6.07 Total: -141.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 112.33 SS G_CDS: -0.29 Total: 112.03 kcal Total: -83.12 -0.83 -83.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565235325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.106 kcal (2) G-P(sol) polarization free energy of solvation -83.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds