Wall clock time and date at job start Tue Mar 31 2020 17:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99933 * 2 1 4 4 O 1.20826 * 120.00048 * 4.71622 * 3 2 1 5 5 C 1.50698 * 119.99835 * 184.71284 * 3 2 1 6 6 N 1.46497 * 109.47382 * 182.68964 * 5 3 2 7 7 C 1.36941 * 120.00020 * 263.93014 * 6 5 3 8 8 H 1.08004 * 119.99541 * 198.84035 * 7 6 5 9 9 C 1.38812 * 119.99938 * 18.83892 * 7 6 5 10 10 N 1.31613 * 120.00119 * 19.35979 * 9 7 6 11 11 Si 1.86803 * 119.99838 * 199.35909 * 9 7 6 12 12 H 1.48499 * 109.46842 * 89.99796 * 11 9 7 13 13 H 1.48495 * 109.47258 * 209.99859 * 11 9 7 14 14 H 1.48495 * 109.47034 * 330.00127 * 11 9 7 15 15 C 1.46500 * 119.99953 * 83.92477 * 6 5 3 16 16 C 1.50700 * 109.47300 * 84.09187 * 15 6 5 17 17 C 1.38168 * 120.01127 * 255.97746 * 16 15 6 18 18 C 1.38440 * 120.02666 * 179.97438 * 17 16 15 19 19 F 1.35105 * 119.96678 * 179.97438 * 18 17 16 20 20 C 1.38467 * 120.05915 * 359.97438 * 18 17 16 21 21 C 1.38132 * 120.03297 * 359.74746 * 20 18 17 22 22 C 1.38687 * 120.01601 * 75.95180 * 16 15 6 23 23 O 1.35951 * 120.02967 * 0.02562 * 22 16 15 24 24 C 1.42898 * 116.99622 * 174.93596 * 23 22 16 25 25 F 1.39900 * 109.47514 * 303.58316 * 24 23 22 26 26 F 1.39897 * 109.47052 * 63.58722 * 24 23 22 27 27 H 1.09002 * 109.46869 * 304.50649 * 1 2 3 28 28 H 1.09001 * 109.47388 * 64.51148 * 1 2 3 29 29 H 1.09008 * 109.47370 * 184.50776 * 1 2 3 30 30 H 1.09005 * 109.47480 * 62.68760 * 5 3 2 31 31 H 1.08998 * 109.47626 * 302.69163 * 5 3 2 32 32 H 0.96998 * 120.00389 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47005 * 324.08736 * 15 6 5 34 34 H 1.09007 * 109.47057 * 204.09331 * 15 6 5 35 35 H 1.07994 * 119.99131 * 359.97438 * 17 16 15 36 36 H 1.08008 * 119.98445 * 180.02562 * 20 18 17 37 37 H 1.08005 * 120.01250 * 180.27293 * 21 20 18 38 38 H 1.09008 * 109.46629 * 183.58588 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4065 2.2077 0.0860 5 6 3.5623 1.2768 -0.1072 6 7 3.9834 2.6773 -0.0207 7 6 4.2109 3.3958 -1.1641 8 1 4.7988 4.3010 -1.1250 9 6 3.6861 2.9606 -2.3732 10 7 2.6826 2.1090 -2.3867 11 14 4.4040 3.5836 -3.9813 12 1 5.5002 2.6813 -4.4164 13 1 3.3429 3.6100 -5.0198 14 1 4.9396 4.9547 -3.7859 15 6 4.1610 3.3092 1.2890 16 6 5.5367 2.9932 1.8169 17 6 5.6945 2.0499 2.8140 18 6 6.9582 1.7590 3.2988 19 9 7.1110 0.8368 4.2742 20 6 8.0656 2.4124 2.7848 21 6 7.9113 3.3517 1.7839 22 6 6.6450 3.6487 1.3016 23 8 6.4911 4.5771 0.3204 24 6 7.6599 5.2922 -0.0851 25 9 8.2318 5.9200 1.0267 26 9 8.5823 4.4002 -0.6426 27 1 -0.3633 0.5822 0.8469 28 1 -0.3634 0.4422 -0.9276 29 1 -0.3634 -1.0245 0.0808 30 1 3.8814 0.8598 -1.0625 31 1 4.0158 0.7102 0.7060 32 1 2.3161 1.8046 -3.2316 33 1 3.4100 2.9283 1.9810 34 1 4.0491 4.3889 1.1897 35 1 4.8318 1.5393 3.2154 36 1 9.0510 2.1842 3.1636 37 1 8.7757 3.8579 1.3802 38 1 7.3873 6.0435 -0.8263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595342192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:58 Heat of formation + Delta-G solvation = -215.171111 kcal Electronic energy + Delta-G solvation = -30021.805530 eV Core-core repulsion = 25223.350169 eV Total energy + Delta-G solvation = -4798.455361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -49.22527 -48.65177 -47.20838 -39.85054 -38.93050 -37.06821 -35.94532 -34.58322 -32.28138 -30.51996 -29.64791 -28.12419 -26.23694 -25.99366 -25.55067 -22.80002 -22.30955 -21.04061 -19.72466 -18.77602 -18.06826 -17.76988 -17.11505 -16.74954 -16.26628 -16.15382 -15.53610 -15.45240 -15.33862 -15.09637 -14.79914 -14.32437 -13.98114 -13.86254 -13.64366 -13.58636 -13.46644 -13.42957 -13.11762 -12.95505 -12.33268 -12.28253 -12.22457 -11.87173 -11.48488 -11.28891 -11.14421 -11.02798 -10.77686 -10.72100 -10.49571 -10.09595 -9.96171 -9.62240 -9.17682 -8.80734 -8.58083 -7.97631 -7.07224 -5.91067 -3.26910 1.34567 1.38942 2.81876 3.33028 3.38610 3.41909 3.58584 3.69192 3.81574 4.07088 4.44091 4.46010 4.48177 4.79045 4.85814 4.89272 5.24708 5.29908 5.40211 5.45218 5.70203 5.79151 5.86399 5.94492 6.07117 6.10848 6.25667 6.26563 6.30550 6.52336 6.62174 6.72662 6.84710 7.01109 7.29115 7.70329 7.79967 8.17219 9.02365 9.36294 9.69056 10.11828 11.20175 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005802 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.875990 B = 4824.420513 C = 7019.058261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.385 6.385 3 C 0.463 3.537 4 O -0.501 6.501 5 C 0.191 3.809 6 N -0.556 5.556 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.000 4.000 10 N -0.905 5.905 11 Si 0.909 3.091 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.280 1.280 15 C 0.186 3.814 16 C -0.072 4.072 17 C -0.118 4.118 18 C 0.066 3.934 19 F -0.146 7.146 20 C -0.128 4.128 21 C -0.169 4.169 22 C 0.121 3.879 23 O -0.286 6.286 24 C 0.405 3.595 25 F -0.206 7.206 26 F -0.200 7.200 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.256 0.744 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 1.273 7.481 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.303 6.303 3 C 0.303 3.697 4 O -0.385 6.385 5 C 0.061 3.939 6 N -0.274 5.274 7 C -0.375 4.375 8 H 0.106 0.894 9 C -0.198 4.198 10 N -0.550 5.550 11 Si 0.739 3.261 12 H -0.214 1.214 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.058 3.942 16 C -0.076 4.076 17 C -0.137 4.137 18 C 0.047 3.953 19 F -0.124 7.124 20 C -0.148 4.148 21 C -0.188 4.188 22 C 0.077 3.923 23 O -0.203 6.203 24 C 0.315 3.685 25 F -0.188 7.188 26 F -0.182 7.182 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.353 1.578 7.289 10.473 hybrid contribution 0.351 0.110 -0.874 0.949 sum 7.704 1.688 6.415 10.166 Atomic orbital electron populations 1.22851 0.79732 1.01188 1.01419 1.86538 1.21071 1.36786 1.85883 1.25485 0.93559 0.80170 0.70509 1.90464 1.66663 1.36339 1.45020 1.20228 0.85121 0.86351 1.02185 1.43858 1.75010 1.07563 1.00929 1.19426 1.25919 1.08034 0.84120 0.89360 1.24887 0.96356 1.00100 0.98443 1.69829 1.23132 1.36702 1.25322 0.86191 0.78244 0.78309 0.83367 1.21434 1.21965 1.20548 1.19710 0.88129 0.98506 0.87813 1.20338 0.97833 0.95023 0.94419 1.20903 0.96088 0.98831 0.97912 1.17591 0.94464 0.92247 0.90999 1.91462 1.96538 1.64064 1.60367 1.20741 0.98090 0.97748 0.98188 1.21313 0.96154 1.01343 0.99970 1.18636 0.93461 0.90914 0.89313 1.86927 1.31843 1.49536 1.51969 1.23450 0.76326 0.85052 0.83720 1.93069 1.86001 1.82640 1.57103 1.93078 1.68634 1.71197 1.85305 0.93460 0.92908 0.90209 0.86893 0.93303 0.93384 0.93118 0.90804 0.84277 0.84914 0.84601 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.64 101.05 1.08 1.84 16 2 O -0.38 -8.25 10.57 -39.24 -0.41 -8.67 16 3 C 0.46 11.08 6.18 36.00 0.22 11.30 16 4 O -0.50 -13.44 15.59 -18.75 -0.29 -13.74 16 5 C 0.19 4.35 5.50 -5.20 -0.03 4.32 16 6 N -0.56 -12.89 2.01 -175.98 -0.35 -13.24 16 7 C -0.25 -6.20 9.16 -15.06 -0.14 -6.34 16 8 H 0.09 2.14 6.10 -52.48 -0.32 1.82 16 9 C 0.00 -0.01 4.91 -17.43 -0.09 -0.09 16 10 N -0.90 -25.03 9.06 55.49 0.50 -24.52 16 11 Si 0.91 20.93 29.60 -169.99 -5.03 15.90 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 15 C 0.19 3.65 5.46 -5.19 -0.03 3.62 16 16 C -0.07 -1.25 5.47 -104.48 -0.57 -1.82 16 17 C -0.12 -1.83 9.64 -39.53 -0.38 -2.21 16 18 C 0.07 0.99 7.30 -39.42 -0.29 0.70 16 19 F -0.15 -2.14 17.27 2.25 0.04 -2.10 16 20 C -0.13 -1.79 10.02 -39.54 -0.40 -2.19 16 21 C -0.17 -2.51 8.26 -39.44 -0.33 -2.84 16 22 C 0.12 2.03 6.44 -39.24 -0.25 1.78 16 23 O -0.29 -4.76 7.49 -19.58 -0.15 -4.91 16 24 C 0.41 5.15 5.98 101.05 0.60 5.76 16 25 F -0.21 -2.59 15.58 2.25 0.04 -2.55 16 26 F -0.20 -2.81 15.60 2.25 0.04 -2.78 16 27 H 0.05 0.81 7.98 -51.93 -0.41 0.39 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 30 H 0.11 2.81 6.46 -51.93 -0.34 2.47 16 31 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 0.97 7.93 -51.93 -0.41 0.55 16 34 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 35 H 0.14 1.95 8.01 -52.49 -0.42 1.53 16 36 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.14 1.86 5.12 -52.48 -0.27 1.59 16 38 H 0.18 1.56 8.14 -51.92 -0.42 1.14 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -31.21 337.38 -4.96 -36.17 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.82 Total: 1.54 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.59 Total: 13.82 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.15 Total: -37.77 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.85 Total: -27.32 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -4.96 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.001 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds