Wall clock time and date at job start Tue Mar 31 2020 17:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99933 * 2 1 4 4 O 1.20826 * 120.00048 * 4.71622 * 3 2 1 5 5 C 1.50698 * 119.99835 * 184.71284 * 3 2 1 6 6 N 1.46497 * 109.47382 * 182.68964 * 5 3 2 7 7 C 1.36941 * 120.00020 * 263.93014 * 6 5 3 8 8 H 1.08004 * 119.99541 * 198.84035 * 7 6 5 9 9 C 1.38812 * 119.99938 * 18.83892 * 7 6 5 10 10 N 1.31613 * 120.00119 * 19.35979 * 9 7 6 11 11 Si 1.86803 * 119.99838 * 199.35909 * 9 7 6 12 12 H 1.48499 * 109.46842 * 89.99796 * 11 9 7 13 13 H 1.48495 * 109.47258 * 209.99859 * 11 9 7 14 14 H 1.48495 * 109.47034 * 330.00127 * 11 9 7 15 15 C 1.46500 * 119.99953 * 83.92477 * 6 5 3 16 16 C 1.50700 * 109.47300 * 84.09187 * 15 6 5 17 17 C 1.38168 * 120.01127 * 255.97746 * 16 15 6 18 18 C 1.38440 * 120.02666 * 179.97438 * 17 16 15 19 19 F 1.35105 * 119.96678 * 179.97438 * 18 17 16 20 20 C 1.38467 * 120.05915 * 359.97438 * 18 17 16 21 21 C 1.38132 * 120.03297 * 359.74746 * 20 18 17 22 22 C 1.38687 * 120.01601 * 75.95180 * 16 15 6 23 23 O 1.35951 * 120.02967 * 0.02562 * 22 16 15 24 24 C 1.42898 * 116.99622 * 174.93596 * 23 22 16 25 25 F 1.39900 * 109.47514 * 303.58316 * 24 23 22 26 26 F 1.39897 * 109.47052 * 63.58722 * 24 23 22 27 27 H 1.09002 * 109.46869 * 304.50649 * 1 2 3 28 28 H 1.09001 * 109.47388 * 64.51148 * 1 2 3 29 29 H 1.09008 * 109.47370 * 184.50776 * 1 2 3 30 30 H 1.09005 * 109.47480 * 62.68760 * 5 3 2 31 31 H 1.08998 * 109.47626 * 302.69163 * 5 3 2 32 32 H 0.96998 * 120.00389 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47005 * 324.08736 * 15 6 5 34 34 H 1.09007 * 109.47057 * 204.09331 * 15 6 5 35 35 H 1.07994 * 119.99131 * 359.97438 * 17 16 15 36 36 H 1.08008 * 119.98445 * 180.02562 * 20 18 17 37 37 H 1.08005 * 120.01250 * 180.27293 * 21 20 18 38 38 H 1.09008 * 109.46629 * 183.58588 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4065 2.2077 0.0860 5 6 3.5623 1.2768 -0.1072 6 7 3.9834 2.6773 -0.0207 7 6 4.2109 3.3958 -1.1641 8 1 4.7988 4.3010 -1.1250 9 6 3.6861 2.9606 -2.3732 10 7 2.6826 2.1090 -2.3867 11 14 4.4040 3.5836 -3.9813 12 1 5.5002 2.6813 -4.4164 13 1 3.3429 3.6100 -5.0198 14 1 4.9396 4.9547 -3.7859 15 6 4.1610 3.3092 1.2890 16 6 5.5367 2.9932 1.8169 17 6 5.6945 2.0499 2.8140 18 6 6.9582 1.7590 3.2988 19 9 7.1110 0.8368 4.2742 20 6 8.0656 2.4124 2.7848 21 6 7.9113 3.3517 1.7839 22 6 6.6450 3.6487 1.3016 23 8 6.4911 4.5771 0.3204 24 6 7.6599 5.2922 -0.0851 25 9 8.2318 5.9200 1.0267 26 9 8.5823 4.4002 -0.6426 27 1 -0.3633 0.5822 0.8469 28 1 -0.3634 0.4422 -0.9276 29 1 -0.3634 -1.0245 0.0808 30 1 3.8814 0.8598 -1.0625 31 1 4.0158 0.7102 0.7060 32 1 2.3161 1.8046 -3.2316 33 1 3.4100 2.9283 1.9810 34 1 4.0491 4.3889 1.1897 35 1 4.8318 1.5393 3.2154 36 1 9.0510 2.1842 3.1636 37 1 8.7757 3.8579 1.3802 38 1 7.3873 6.0435 -0.8263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595342192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:54 Heat of formation + Delta-G solvation = -232.056925 kcal Electronic energy + Delta-G solvation = -30022.537754 eV Core-core repulsion = 25223.350169 eV Total energy + Delta-G solvation = -4799.187585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -50.23737 -49.80681 -48.22342 -41.11805 -40.68908 -38.30789 -37.61205 -36.40954 -33.90510 -32.11295 -30.88663 -29.77162 -27.69728 -27.53721 -26.80824 -24.33582 -23.56081 -22.48667 -21.47851 -19.90442 -19.16612 -18.81949 -18.79826 -18.18077 -17.98311 -17.34628 -17.19467 -16.83774 -16.63105 -16.57040 -16.46379 -15.62967 -15.35853 -15.16185 -15.11353 -14.84396 -14.60380 -14.50878 -14.47269 -14.34660 -13.92688 -13.81635 -13.50444 -13.24111 -12.92217 -12.87259 -12.69910 -12.54214 -12.41999 -12.30102 -12.00915 -11.87875 -11.78017 -11.36592 -11.04788 -10.51489 -10.03492 -9.21161 -8.90759 -7.86388 -5.22276 0.15449 0.18061 1.50296 1.52980 1.59670 1.77218 1.98036 2.32462 2.51623 2.59531 2.63463 3.26336 3.37486 3.54047 3.63548 3.74298 3.76295 3.80546 4.11591 4.20917 4.40688 4.46464 4.46692 4.53864 4.56512 4.69489 4.81455 4.93372 5.00080 5.09040 5.13937 5.18061 5.32514 5.65543 5.80591 5.95481 6.10648 6.29430 7.09467 7.51519 7.83199 8.22893 9.22943 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005802 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.875990 B = 4824.420513 C = 7019.058261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.388 6.388 3 C 0.466 3.534 4 O -0.537 6.537 5 C 0.193 3.807 6 N -0.569 5.569 7 C -0.238 4.238 8 H 0.096 0.904 9 C -0.056 4.056 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.289 1.289 13 H -0.309 1.309 14 H -0.261 1.261 15 C 0.192 3.808 16 C -0.091 4.091 17 C -0.115 4.115 18 C 0.062 3.938 19 F -0.143 7.143 20 C -0.116 4.116 21 C -0.171 4.171 22 C 0.110 3.890 23 O -0.311 6.311 24 C 0.402 3.598 25 F -0.205 7.205 26 F -0.208 7.208 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 1.263 8.319 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.305 6.305 3 C 0.308 3.692 4 O -0.425 6.425 5 C 0.063 3.937 6 N -0.287 5.287 7 C -0.367 4.367 8 H 0.114 0.886 9 C -0.250 4.250 10 N -0.581 5.581 11 Si 0.792 3.208 12 H -0.216 1.216 13 H -0.237 1.237 14 H -0.185 1.185 15 C 0.066 3.934 16 C -0.094 4.094 17 C -0.135 4.135 18 C 0.042 3.958 19 F -0.122 7.122 20 C -0.135 4.135 21 C -0.189 4.189 22 C 0.066 3.934 23 O -0.228 6.228 24 C 0.313 3.687 25 F -0.187 7.187 26 F -0.190 7.190 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.144 0.856 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.971 1.571 8.165 12.232 hybrid contribution -0.119 0.096 -1.018 1.029 sum 8.851 1.667 7.147 11.498 Atomic orbital electron populations 1.23149 0.77465 1.04122 1.00731 1.86497 1.23283 1.35443 1.85320 1.25659 0.94019 0.80197 0.69375 1.90435 1.67532 1.37595 1.46893 1.20194 0.84813 0.86704 1.01953 1.44033 1.75183 1.07727 1.01761 1.19760 1.24405 1.07746 0.84795 0.88613 1.25560 0.97069 1.01230 1.01097 1.69992 1.24738 1.38625 1.24791 0.85310 0.76922 0.78732 0.79791 1.21566 1.23668 1.18538 1.19639 0.89766 0.97590 0.86359 1.20019 0.96510 0.96844 0.96053 1.20991 0.97045 0.98151 0.97264 1.17614 0.94466 0.92505 0.91185 1.91472 1.96497 1.63984 1.60251 1.21075 0.99191 0.96266 0.96962 1.21458 0.95750 1.01607 1.00112 1.18833 0.93999 0.91079 0.89470 1.86874 1.34103 1.49791 1.52020 1.24076 0.75342 0.85079 0.84241 1.93066 1.85900 1.82414 1.57320 1.93058 1.68881 1.71724 1.85363 0.93104 0.94541 0.85595 0.89146 0.90493 0.94649 0.93016 0.91884 0.83228 0.81976 0.83430 0.76647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.64 113.37 1.21 2.56 16 2 O -0.39 -16.51 10.57 -51.37 -0.54 -17.06 16 3 C 0.47 22.51 6.18 71.24 0.44 22.95 16 4 O -0.54 -29.37 15.59 21.96 0.34 -29.02 16 5 C 0.19 8.85 5.50 85.63 0.47 9.32 16 6 N -0.57 -26.46 2.01 -710.68 -1.43 -27.89 16 7 C -0.24 -11.98 9.16 84.03 0.77 -11.21 16 8 H 0.10 4.59 6.10 -2.91 -0.02 4.57 16 9 C -0.06 -2.95 4.91 84.86 0.42 -2.53 16 10 N -0.93 -52.91 9.06 21.65 0.20 -52.71 16 11 Si 0.96 43.26 29.60 68.60 2.03 45.29 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 C 0.19 7.56 5.46 85.63 0.47 8.03 16 16 C -0.09 -3.06 5.47 -19.77 -0.11 -3.17 16 17 C -0.12 -3.39 9.64 22.30 0.22 -3.17 16 18 C 0.06 1.69 7.30 22.37 0.16 1.85 16 19 F -0.14 -3.85 17.27 44.97 0.78 -3.07 16 20 C -0.12 -2.90 10.02 22.30 0.22 -2.67 16 21 C -0.17 -4.69 8.26 22.36 0.18 -4.50 16 22 C 0.11 3.56 6.44 22.49 0.14 3.71 16 23 O -0.31 -9.94 7.49 -92.99 -0.70 -10.64 16 24 C 0.40 9.37 5.98 113.37 0.68 10.05 16 25 F -0.21 -4.71 15.58 44.97 0.70 -4.01 16 26 F -0.21 -5.43 15.60 44.97 0.70 -4.72 16 27 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.13 3.11 8.14 -2.38 -0.02 3.09 16 30 H 0.09 4.59 6.46 -2.38 -0.02 4.57 16 31 H 0.08 3.02 8.12 -2.39 -0.02 3.00 16 32 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 34 H 0.06 2.56 7.83 -2.38 -0.02 2.54 16 35 H 0.15 3.97 8.01 -2.91 -0.02 3.95 16 36 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.15 3.67 5.12 -2.91 -0.01 3.66 16 38 H 0.22 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -67.54 337.38 8.48 -59.06 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.12 Total: 13.56 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 5.27 Total: 31.21 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.23 Total: -80.60 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.90 Total: -56.72 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 2.18 Total: -11.80 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.54 8.48 -59.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.994 kcal (2) G-P(sol) polarization free energy of solvation -67.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds