Wall clock time and date at job start Tue Mar 31 2020 17:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99924 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00225 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47184 * 180.02562 * 5 3 2 7 7 C 1.37094 * 120.00146 * 264.08984 * 6 5 3 8 8 H 1.08009 * 120.00056 * 196.60524 * 7 6 5 9 9 C 1.38946 * 120.00091 * 16.61026 * 7 6 5 10 10 N 1.31410 * 120.00308 * 20.78743 * 9 7 6 11 11 Si 1.86803 * 119.99809 * 200.78966 * 9 7 6 12 12 H 1.48501 * 109.47164 * 89.99600 * 11 9 7 13 13 H 1.48497 * 109.47065 * 209.99647 * 11 9 7 14 14 H 1.48499 * 109.47244 * 330.00079 * 11 9 7 15 15 C 1.34780 * 119.99829 * 84.09397 * 6 5 3 16 16 O 1.21293 * 119.99920 * 359.97438 * 15 6 5 17 17 C 1.50699 * 120.00194 * 180.02562 * 15 6 5 18 18 C 1.52999 * 109.47368 * 179.97438 * 17 15 6 19 19 H 1.09004 * 110.05075 * 53.51678 * 18 17 15 20 20 O 1.45394 * 110.11179 * 292.01244 * 18 17 15 21 21 C 1.34349 * 109.00658 * 240.73389 * 20 18 17 22 22 O 1.21473 * 124.89719 * 180.02562 * 21 20 18 23 23 C 1.47430 * 110.20677 * 359.76102 * 21 20 18 24 24 C 1.39623 * 132.54009 * 179.52790 * 23 21 20 25 25 C 1.37943 * 119.79336 * 180.43333 * 24 23 21 26 26 C 1.38392 * 120.32535 * 0.23456 * 25 24 23 27 27 C 1.38499 * 120.21376 * 0.03758 * 26 25 24 28 28 C 1.37544 * 119.94754 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47510 * 300.00138 * 1 2 3 31 31 H 1.09001 * 109.46632 * 60.00255 * 1 2 3 32 32 H 1.09004 * 109.46839 * 60.00558 * 5 3 2 33 33 H 1.08996 * 109.47619 * 300.00860 * 5 3 2 34 34 H 0.96993 * 120.00135 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46925 * 59.99327 * 17 15 6 36 36 H 1.09002 * 109.47110 * 299.99857 * 17 15 6 37 37 H 1.08003 * 120.10102 * 0.71365 * 24 23 21 38 38 H 1.08000 * 119.83889 * 180.25601 * 25 24 23 39 39 H 1.07995 * 119.89911 * 180.02562 * 26 25 24 40 40 H 1.08001 * 120.02287 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.2936 3.3028 -1.1796 8 1 4.8471 4.2303 -1.1710 9 6 3.8977 2.7413 -2.3873 10 7 2.9093 1.8758 -2.4168 11 14 4.7705 3.2165 -3.9690 12 1 5.9126 2.2959 -4.1999 13 1 3.8205 3.1217 -5.1063 14 1 5.2725 4.6097 -3.8580 15 6 4.0570 3.3598 1.1623 16 8 3.7806 2.8087 2.2069 17 6 4.4837 4.8051 1.1629 18 6 4.4849 5.3361 2.5978 19 1 5.0879 4.6892 3.2351 20 8 3.1243 5.4083 3.1053 21 6 2.8402 6.6842 3.4156 22 8 1.7798 7.0705 3.8651 23 6 4.0030 7.5469 3.1379 24 6 4.2143 8.9200 3.2767 25 6 5.4302 9.4658 2.9212 26 6 6.4391 8.6598 2.4234 27 6 6.2351 7.2977 2.2775 28 6 5.0265 6.7430 2.6287 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.9564 0.7808 -0.8892 33 1 3.9558 0.7810 0.8907 34 1 2.6332 1.4835 -3.2598 35 1 3.7884 5.3894 0.5602 36 1 5.4864 4.8881 0.7436 37 1 3.4297 9.5522 3.6655 38 1 5.5959 10.5272 3.0321 39 1 7.3886 9.0943 2.1476 40 1 7.0244 6.6717 1.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:58 Heat of formation + Delta-G solvation = -146.445836 kcal Electronic energy + Delta-G solvation = -28917.011879 eV Core-core repulsion = 24663.393410 eV Total energy + Delta-G solvation = -4253.618469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.53929 -39.45578 -38.36650 -38.28701 -37.08435 -35.42691 -34.62552 -32.58321 -31.65361 -31.31821 -30.29151 -28.37474 -26.35193 -25.19445 -24.33332 -23.94267 -21.95029 -20.78538 -20.12312 -19.24951 -17.58541 -17.31448 -16.98959 -16.56378 -16.25219 -16.06275 -15.85714 -15.45677 -15.17990 -14.88691 -14.47861 -14.34416 -14.27307 -14.00586 -13.40394 -13.23740 -13.00675 -12.81219 -12.63384 -12.44125 -12.35555 -11.96833 -11.64332 -11.37340 -11.36413 -11.25176 -11.14735 -10.82853 -10.72457 -10.54989 -10.38995 -10.09495 -9.79356 -9.61584 -9.26480 -9.10933 -9.03353 -8.65698 -8.03160 -6.57597 -4.07721 0.50781 1.05006 2.56194 3.01757 3.12428 3.15676 3.30497 3.45212 3.56831 3.70499 3.74774 3.94151 4.03822 4.09928 4.53606 4.68241 4.73526 4.91930 5.02378 5.09905 5.21532 5.28291 5.46488 5.68426 5.72708 5.81633 5.88405 5.89596 5.97700 6.03777 6.08477 6.12177 6.21496 6.29401 6.41612 6.54058 6.61573 6.99046 7.24419 7.44043 7.55876 7.63162 8.13786 8.89511 9.11314 9.27496 9.68181 10.49653 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004147 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.232081 B = 6749.529437 C = 8287.519143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.483 3.517 4 O -0.497 6.497 5 C 0.158 3.842 6 N -0.428 5.428 7 C -0.341 4.341 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.865 5.865 11 Si 0.926 3.074 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.470 3.530 16 O -0.591 6.591 17 C -0.121 4.121 18 C 0.137 3.863 19 H 0.130 0.870 20 O -0.287 6.287 21 C 0.515 3.485 22 O -0.462 6.462 23 C -0.192 4.192 24 C -0.039 4.039 25 C -0.131 4.131 26 C -0.082 4.082 27 C -0.097 4.097 28 C -0.086 4.086 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.274 0.726 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 7.397 4.172 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.324 3.676 4 O -0.382 6.382 5 C 0.032 3.968 6 N -0.147 5.147 7 C -0.468 4.468 8 H 0.122 0.878 9 C -0.167 4.167 10 N -0.503 5.503 11 Si 0.753 3.247 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.259 3.741 16 O -0.476 6.476 17 C -0.161 4.161 18 C 0.081 3.919 19 H 0.147 0.853 20 O -0.201 6.201 21 C 0.357 3.643 22 O -0.349 6.349 23 C -0.193 4.193 24 C -0.057 4.057 25 C -0.149 4.149 26 C -0.100 4.100 27 C -0.114 4.114 28 C -0.087 4.087 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.360 7.277 4.737 11.383 hybrid contribution -0.009 0.401 -1.236 1.300 sum 7.352 7.678 3.501 11.192 Atomic orbital electron populations 1.22934 0.78679 1.01785 1.01696 1.86447 1.21706 1.35486 1.85736 1.23939 0.92295 0.80608 0.70751 1.90535 1.66464 1.36353 1.44810 1.20473 0.87299 0.85430 1.03588 1.43373 1.57103 1.08172 1.06030 1.19625 1.35088 1.09757 0.82286 0.87781 1.25235 0.94744 0.97009 0.99690 1.69847 1.22578 1.29792 1.28062 0.85936 0.79027 0.79087 0.80665 1.20086 1.20979 1.19400 1.19822 0.82629 0.87588 0.84054 1.90593 1.55121 1.70004 1.31854 1.21682 1.04625 0.96468 0.93307 1.21876 0.79888 0.92525 0.97642 0.85285 1.87523 1.31789 1.26537 1.74215 1.20648 0.86690 0.81922 0.75053 1.90837 1.26865 1.75965 1.41192 1.21036 0.96347 0.95678 1.06273 1.20873 0.97248 0.92315 0.95280 1.21167 0.93045 1.00437 1.00273 1.21408 0.99225 0.93103 0.96293 1.20364 0.95638 0.95201 1.00245 1.20975 0.94888 0.95825 0.97012 0.89609 0.93081 0.92649 0.85878 0.89958 0.91563 0.88287 0.87453 0.84813 0.84840 0.84700 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.26 10.57 -39.27 -0.41 -8.68 16 3 C 0.48 12.13 6.13 36.00 0.22 12.35 16 4 O -0.50 -14.16 15.79 -18.75 -0.30 -14.46 16 5 C 0.16 3.72 5.14 -5.20 -0.03 3.69 16 6 N -0.43 -10.33 2.18 -116.10 -0.25 -10.58 16 7 C -0.34 -8.07 9.15 -14.94 -0.14 -8.21 16 8 H 0.10 2.25 6.55 -52.48 -0.34 1.90 16 9 C 0.04 0.92 4.90 -17.47 -0.09 0.84 16 10 N -0.87 -21.93 9.24 55.50 0.51 -21.42 16 11 Si 0.93 18.41 29.60 -169.99 -5.03 13.37 16 12 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.47 10.89 7.34 -10.98 -0.08 10.81 16 16 O -0.59 -15.03 15.23 -3.81 -0.06 -15.09 16 17 C -0.12 -2.21 3.89 -27.88 -0.11 -2.31 16 18 C 0.14 2.27 3.14 -27.84 -0.09 2.19 16 19 H 0.13 2.01 7.92 -51.93 -0.41 1.60 16 20 O -0.29 -5.91 10.29 -43.47 -0.45 -6.36 16 21 C 0.51 9.76 8.58 34.47 0.30 10.06 16 22 O -0.46 -9.82 18.04 -18.92 -0.34 -10.16 16 23 C -0.19 -2.84 6.27 -105.07 -0.66 -3.50 16 24 C -0.04 -0.45 10.10 -39.17 -0.40 -0.85 16 25 C -0.13 -1.16 10.02 -39.63 -0.40 -1.56 16 26 C -0.08 -0.69 10.05 -39.43 -0.40 -1.09 16 27 C -0.10 -0.98 10.03 -39.74 -0.40 -1.38 16 28 C -0.09 -1.17 5.68 -104.27 -0.59 -1.76 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.12 2.85 6.35 -51.93 -0.33 2.52 16 33 H 0.08 1.80 7.61 -51.93 -0.39 1.41 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.10 1.92 8.10 -51.93 -0.42 1.50 16 36 H 0.11 1.60 7.70 -51.93 -0.40 1.20 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -34.35 352.39 -7.19 -41.55 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.39 Total: 5.38 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: -1.78 Total: 21.13 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.26 Total: -32.00 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -1.56 Total: -54.74 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.35 -7.19 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.899 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds