Wall clock time and date at job start Tue Mar 31 2020 17:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99924 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00225 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47184 * 180.02562 * 5 3 2 7 7 C 1.37094 * 120.00146 * 264.08984 * 6 5 3 8 8 H 1.08009 * 120.00056 * 196.60524 * 7 6 5 9 9 C 1.38946 * 120.00091 * 16.61026 * 7 6 5 10 10 N 1.31410 * 120.00308 * 20.78743 * 9 7 6 11 11 Si 1.86803 * 119.99809 * 200.78966 * 9 7 6 12 12 H 1.48501 * 109.47164 * 89.99600 * 11 9 7 13 13 H 1.48497 * 109.47065 * 209.99647 * 11 9 7 14 14 H 1.48499 * 109.47244 * 330.00079 * 11 9 7 15 15 C 1.34780 * 119.99829 * 84.09397 * 6 5 3 16 16 O 1.21293 * 119.99920 * 359.97438 * 15 6 5 17 17 C 1.50699 * 120.00194 * 180.02562 * 15 6 5 18 18 C 1.52999 * 109.47368 * 179.97438 * 17 15 6 19 19 H 1.09004 * 110.05075 * 53.51678 * 18 17 15 20 20 O 1.45394 * 110.11179 * 292.01244 * 18 17 15 21 21 C 1.34349 * 109.00658 * 240.73389 * 20 18 17 22 22 O 1.21473 * 124.89719 * 180.02562 * 21 20 18 23 23 C 1.47430 * 110.20677 * 359.76102 * 21 20 18 24 24 C 1.39623 * 132.54009 * 179.52790 * 23 21 20 25 25 C 1.37943 * 119.79336 * 180.43333 * 24 23 21 26 26 C 1.38392 * 120.32535 * 0.23456 * 25 24 23 27 27 C 1.38499 * 120.21376 * 0.03758 * 26 25 24 28 28 C 1.37544 * 119.94754 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47510 * 300.00138 * 1 2 3 31 31 H 1.09001 * 109.46632 * 60.00255 * 1 2 3 32 32 H 1.09004 * 109.46839 * 60.00558 * 5 3 2 33 33 H 1.08996 * 109.47619 * 300.00860 * 5 3 2 34 34 H 0.96993 * 120.00135 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46925 * 59.99327 * 17 15 6 36 36 H 1.09002 * 109.47110 * 299.99857 * 17 15 6 37 37 H 1.08003 * 120.10102 * 0.71365 * 24 23 21 38 38 H 1.08000 * 119.83889 * 180.25601 * 25 24 23 39 39 H 1.07995 * 119.89911 * 180.02562 * 26 25 24 40 40 H 1.08001 * 120.02287 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.2936 3.3028 -1.1796 8 1 4.8471 4.2303 -1.1710 9 6 3.8977 2.7413 -2.3873 10 7 2.9093 1.8758 -2.4168 11 14 4.7705 3.2165 -3.9690 12 1 5.9126 2.2959 -4.1999 13 1 3.8205 3.1217 -5.1063 14 1 5.2725 4.6097 -3.8580 15 6 4.0570 3.3598 1.1623 16 8 3.7806 2.8087 2.2069 17 6 4.4837 4.8051 1.1629 18 6 4.4849 5.3361 2.5978 19 1 5.0879 4.6892 3.2351 20 8 3.1243 5.4083 3.1053 21 6 2.8402 6.6842 3.4156 22 8 1.7798 7.0705 3.8651 23 6 4.0030 7.5469 3.1379 24 6 4.2143 8.9200 3.2767 25 6 5.4302 9.4658 2.9212 26 6 6.4391 8.6598 2.4234 27 6 6.2351 7.2977 2.2775 28 6 5.0265 6.7430 2.6287 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.9564 0.7808 -0.8892 33 1 3.9558 0.7810 0.8907 34 1 2.6332 1.4835 -3.2598 35 1 3.7884 5.3894 0.5602 36 1 5.4864 4.8881 0.7436 37 1 3.4297 9.5522 3.6655 38 1 5.5959 10.5272 3.0321 39 1 7.3886 9.0943 2.1476 40 1 7.0244 6.6717 1.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737860182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:57 Heat of formation + Delta-G solvation = -166.963094 kcal Electronic energy + Delta-G solvation = -28917.901574 eV Core-core repulsion = 24663.393410 eV Total energy + Delta-G solvation = -4254.508164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79244 -41.33392 -40.14627 -39.36962 -38.52493 -37.29638 -36.53950 -33.85851 -33.48214 -32.24765 -31.53144 -30.03050 -27.94785 -26.88167 -25.61642 -25.12817 -23.01930 -22.33988 -21.59535 -21.00935 -19.08804 -18.65624 -18.47773 -18.39283 -17.89040 -17.50160 -17.26351 -17.00696 -16.78943 -16.22011 -16.11524 -15.95212 -15.45288 -15.16701 -14.81280 -14.69477 -14.38515 -14.15882 -14.12325 -13.88405 -13.78248 -13.34891 -13.11006 -12.93845 -12.81728 -12.76481 -12.52600 -12.45554 -12.19827 -12.07859 -11.88653 -11.61070 -11.53288 -11.41618 -10.94966 -10.55904 -10.12250 -9.94372 -9.88430 -8.37519 -5.94027 -0.49244 0.24157 1.35217 1.43147 1.52012 1.62619 1.68059 1.77585 2.00789 2.23342 2.33982 2.62082 2.69744 2.76842 3.07475 3.16357 3.62998 3.84594 4.00020 4.13127 4.21436 4.27685 4.31185 4.33598 4.37334 4.42216 4.49858 4.57865 4.61569 4.66954 4.74631 4.81153 4.94636 5.14894 5.30567 5.38069 5.44024 5.61184 5.64631 5.71399 5.83895 6.22417 6.30796 7.06524 7.18920 7.45750 7.86962 8.70065 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004147 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.232081 B = 6749.529437 C = 8287.519143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.483 3.517 4 O -0.541 6.541 5 C 0.155 3.845 6 N -0.440 5.440 7 C -0.354 4.354 8 H 0.126 0.874 9 C -0.007 4.007 10 N -0.900 5.900 11 Si 0.998 3.002 12 H -0.266 1.266 13 H -0.298 1.298 14 H -0.253 1.253 15 C 0.456 3.544 16 O -0.623 6.623 17 C -0.109 4.109 18 C 0.136 3.864 19 H 0.133 0.867 20 O -0.331 6.331 21 C 0.504 3.496 22 O -0.508 6.508 23 C -0.220 4.220 24 C -0.045 4.045 25 C -0.119 4.119 26 C -0.061 4.061 27 C -0.093 4.093 28 C -0.091 4.091 29 H 0.136 0.864 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.271 0.729 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 9.612 3.015 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.429 6.429 5 C 0.029 3.971 6 N -0.158 5.158 7 C -0.481 4.481 8 H 0.143 0.857 9 C -0.209 4.209 10 N -0.538 5.538 11 Si 0.822 3.178 12 H -0.191 1.191 13 H -0.224 1.224 14 H -0.177 1.177 15 C 0.246 3.754 16 O -0.510 6.510 17 C -0.149 4.149 18 C 0.080 3.920 19 H 0.150 0.850 20 O -0.246 6.246 21 C 0.350 3.650 22 O -0.398 6.398 23 C -0.222 4.222 24 C -0.063 4.063 25 C -0.136 4.136 26 C -0.079 4.079 27 C -0.111 4.111 28 C -0.091 4.091 29 H 0.154 0.846 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.190 0.810 39 H 0.199 0.801 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.968 9.476 3.583 14.931 hybrid contribution -1.138 -0.313 -0.843 1.451 sum 9.829 9.164 2.740 13.715 Atomic orbital electron populations 1.23281 0.76364 1.04883 1.01003 1.86421 1.23977 1.33865 1.85044 1.24266 0.92941 0.80700 0.69451 1.90502 1.67497 1.37852 1.47091 1.20552 0.86602 0.86031 1.03907 1.43667 1.57057 1.08405 1.06673 1.20158 1.35120 1.10574 0.82222 0.85697 1.26188 0.94965 0.96919 1.02826 1.69972 1.24081 1.31271 1.28517 0.84840 0.77530 0.79644 0.75788 1.19080 1.22421 1.17702 1.20716 0.81933 0.89382 0.83344 1.90557 1.56343 1.71208 1.32900 1.21654 1.06073 0.92520 0.94606 1.21937 0.78548 0.95054 0.96423 0.84950 1.87442 1.34264 1.28309 1.74599 1.21366 0.87496 0.82211 0.73932 1.90771 1.28925 1.76600 1.43484 1.20778 0.94782 0.96991 1.09657 1.21153 0.99019 0.90836 0.95315 1.21650 0.91410 1.02450 0.98106 1.21993 1.00563 0.91981 0.93331 1.20818 0.94531 0.96593 0.99121 1.20798 0.96172 0.93245 0.98922 0.84573 0.93500 0.93681 0.85765 0.89040 0.91921 0.89800 0.83454 0.84341 0.80950 0.80146 0.81516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.56 113.37 1.20 2.58 16 2 O -0.38 -16.85 10.57 -51.45 -0.54 -17.39 16 3 C 0.48 25.14 6.13 71.24 0.44 25.58 16 4 O -0.54 -32.23 15.79 21.96 0.35 -31.89 16 5 C 0.15 7.51 5.14 85.63 0.44 7.95 16 6 N -0.44 -21.59 2.18 -639.61 -1.39 -22.98 16 7 C -0.35 -16.67 9.15 84.04 0.77 -15.90 16 8 H 0.13 5.17 6.55 -2.91 -0.02 5.15 16 9 C -0.01 -0.35 4.90 84.93 0.42 0.07 16 10 N -0.90 -46.40 9.24 21.66 0.20 -46.20 16 11 Si 1.00 36.92 29.60 68.60 2.03 38.95 16 12 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 13 H -0.30 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 15 C 0.46 21.63 7.34 87.66 0.64 22.28 16 16 O -0.62 -33.04 15.23 5.88 0.09 -32.95 16 17 C -0.11 -3.97 3.89 29.85 0.12 -3.86 16 18 C 0.14 4.59 3.14 29.88 0.09 4.68 16 19 H 0.13 4.23 7.92 -2.38 -0.02 4.21 16 20 O -0.33 -14.65 10.29 -48.84 -0.50 -15.15 16 21 C 0.50 20.50 8.58 70.24 0.60 21.10 16 22 O -0.51 -23.40 18.04 19.61 0.35 -23.05 16 23 C -0.22 -6.53 6.27 -20.16 -0.13 -6.65 16 24 C -0.05 -0.96 10.10 22.53 0.23 -0.73 16 25 C -0.12 -1.50 10.02 22.24 0.22 -1.28 16 26 C -0.06 -0.65 10.05 22.37 0.22 -0.43 16 27 C -0.09 -1.47 10.03 22.17 0.22 -1.25 16 28 C -0.09 -2.32 5.68 -19.63 -0.11 -2.44 16 29 H 0.14 3.49 8.14 -2.38 -0.02 3.47 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 32 H 0.12 5.92 6.35 -2.38 -0.02 5.91 16 33 H 0.09 4.15 7.61 -2.39 -0.02 4.13 16 34 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 36 H 0.15 4.03 7.70 -2.39 -0.02 4.01 16 37 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -81.61 352.39 7.05 -74.57 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 1.09 Total: 24.38 kcal Atomic # 6 Polarization: 46.34 SS G_CDS: 5.37 Total: 51.71 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.19 Total: -69.18 kcal Atomic # 8 Polarization: -120.17 SS G_CDS: -0.26 Total: -120.43 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -81.61 7.05 -74.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.395 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds