Wall clock time and date at job start Tue Mar 31 2020 17:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.50699 * 110.01299 * 59.29904 * 5 2 1 7 7 O 1.20825 * 119.99725 * 135.70517 * 6 5 2 8 8 O 1.34225 * 120.00288 * 315.69768 * 6 5 2 9 9 C 1.45203 * 117.00255 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47309 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00305 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00163 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47084 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00073 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99942 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47021 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47044 * 239.99737 * 18 16 14 22 22 C 1.54265 * 110.02987 * 297.91050 * 5 2 1 23 23 C 1.54970 * 104.15832 * 217.13330 * 22 5 2 24 24 C 1.54891 * 102.77677 * 37.88890 * 23 22 5 25 25 C 1.53872 * 110.03339 * 180.69247 * 5 2 1 26 26 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 27 27 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 28 28 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 29 29 H 1.08998 * 109.47102 * 300.00319 * 9 8 6 30 30 H 1.09001 * 109.46966 * 60.00526 * 9 8 6 31 31 H 0.97002 * 119.99948 * 359.97438 * 12 10 9 32 32 H 1.08998 * 109.46906 * 299.99722 * 13 12 10 33 33 H 1.09001 * 109.47113 * 59.99900 * 13 12 10 34 34 H 0.97001 * 120.00311 * 180.02562 * 17 16 14 35 35 H 1.08994 * 110.48982 * 335.78052 * 22 5 2 36 36 H 1.09002 * 110.48580 * 98.42798 * 22 5 2 37 37 H 1.09001 * 110.72112 * 279.57546 * 23 22 5 38 38 H 1.08997 * 110.76371 * 156.21975 * 23 22 5 39 39 H 1.09000 * 110.48893 * 203.40344 * 24 23 22 40 40 H 1.08995 * 110.48348 * 80.75892 * 24 23 22 41 41 H 1.09004 * 110.02753 * 238.56981 * 25 5 2 42 42 H 1.09000 * 110.02848 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 1.5880 0.1012 -2.7150 7 8 2.2354 0.3553 -3.7031 8 8 0.3337 0.5643 -2.5971 9 6 -0.1801 1.3632 -3.6954 10 6 -1.5915 1.7920 -3.3874 11 8 -2.1131 1.4576 -2.3447 12 7 -2.2744 2.5470 -4.2706 13 6 -3.6464 2.9643 -3.9709 14 6 -4.1797 3.7934 -5.1109 15 1 -3.5585 3.9901 -5.9722 16 6 -5.4604 4.3006 -5.0542 17 7 -6.2170 4.0606 -4.0056 18 14 -6.1211 5.3289 -6.4669 19 1 -5.0801 5.4520 -7.5187 20 1 -7.3254 4.6723 -7.0361 21 1 -6.4829 6.6802 -5.9686 22 6 1.6342 -2.1736 -1.6823 23 6 2.7026 -2.9548 -2.4884 24 6 4.0311 -2.3406 -1.9813 25 6 3.7120 -0.8416 -1.8055 26 1 -0.3633 0.5970 -0.8365 27 1 -0.3633 0.4260 0.9352 28 1 -0.3634 -1.0230 -0.0987 29 1 0.4466 2.2452 -3.8273 30 1 -0.1714 0.7711 -4.6105 31 1 -1.8572 2.8148 -5.1044 32 1 -4.2734 2.0827 -3.8380 33 1 -3.6543 3.5571 -3.0562 34 1 -7.1182 4.4172 -3.9658 35 1 1.5324 -2.5904 -0.6804 36 1 0.6762 -2.1891 -2.2022 37 1 2.5809 -2.7827 -3.5579 38 1 2.6572 -4.0195 -2.2597 39 1 4.8214 -2.4785 -2.7192 40 1 4.3168 -2.7842 -1.0276 41 1 4.0166 -0.2883 -2.6940 42 1 4.2260 -0.4505 -0.9275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750269130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:47 Heat of formation + Delta-G solvation = -191.169166 kcal Electronic energy + Delta-G solvation = -27498.823830 eV Core-core repulsion = 23378.709963 eV Total energy + Delta-G solvation = -4120.113867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.30955 -39.13941 -38.17151 -37.23492 -36.61489 -36.34511 -34.38308 -32.51459 -31.03563 -29.81220 -29.15258 -28.82628 -26.79303 -23.62750 -22.52343 -21.37145 -20.94929 -20.13312 -19.42314 -18.38619 -17.81473 -17.27814 -16.92148 -16.51316 -16.25472 -15.86048 -15.69848 -15.42691 -15.14187 -14.73748 -14.58131 -13.98049 -13.84590 -13.41947 -13.21713 -13.16544 -12.86515 -12.64232 -12.51821 -12.38247 -12.27998 -12.09214 -11.92643 -11.89392 -11.68852 -11.61573 -11.33322 -11.18242 -11.06596 -11.03889 -10.94957 -10.86007 -10.54823 -10.41057 -9.50200 -9.35337 -8.86770 -8.11091 -6.26478 -4.34144 -0.40547 1.69141 1.80654 2.32288 2.99469 3.17453 3.18012 3.25490 3.28103 3.47652 3.68022 3.86937 3.98973 4.24735 4.31634 4.55711 4.66765 4.74390 4.82466 4.87933 4.93883 5.03126 5.06833 5.10539 5.16227 5.19011 5.21671 5.37430 5.48146 5.58698 5.60559 5.82604 5.91094 6.10880 7.09721 7.14236 7.22399 7.36223 7.52387 7.83902 8.36654 8.59739 8.83046 9.32635 10.83601 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002633 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.353092 B =10632.818651 C =11168.436394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.422 3.578 3 O -0.927 6.927 4 O -0.926 6.926 5 C -0.548 4.548 6 C 0.487 3.513 7 O -0.474 6.474 8 O -0.335 6.335 9 C 0.044 3.956 10 C 0.500 3.500 11 O -0.535 6.535 12 N -0.703 5.703 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.096 4.096 26 H 0.167 0.833 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.394 0.606 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.360 -13.539 3.614 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.602 3.398 3 O -0.924 6.924 4 O -0.923 6.923 5 C -0.634 4.634 6 C 0.327 3.673 7 O -0.359 6.359 8 O -0.251 6.251 9 C -0.033 4.033 10 C 0.282 3.718 11 O -0.413 6.413 12 N -0.352 5.352 13 C 0.131 3.869 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.139 4.139 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.134 4.134 26 H 0.184 0.816 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.227 0.773 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.548 -13.330 4.742 23.328 hybrid contribution -0.806 0.598 -1.915 2.162 sum 17.742 -12.732 2.827 22.020 Atomic orbital electron populations 1.30403 1.22136 1.13094 1.14129 1.08194 0.80080 0.75605 0.75933 1.93619 1.80281 1.33241 1.85257 1.93598 1.80471 1.67190 1.51077 1.30718 1.06251 1.07484 1.18962 1.22044 0.80277 0.77567 0.87421 1.90641 1.61004 1.53997 1.30252 1.86478 1.29201 1.63517 1.45929 1.23083 0.95245 0.96337 0.88604 1.19805 0.86164 0.80442 0.85355 1.90693 1.69704 1.55862 1.25015 1.46374 1.17719 1.50659 1.20481 1.19218 0.74878 0.95547 0.97285 1.21228 0.99529 1.33676 1.04022 0.91697 1.24948 0.96509 0.96150 0.96349 1.69974 1.09250 1.44354 1.28539 0.86333 0.78945 0.79814 0.81657 1.19592 1.20747 1.20725 1.22396 1.00524 0.87121 1.03845 1.22495 0.93355 0.99629 1.00073 1.22384 0.98050 0.93194 1.02269 1.22077 0.86319 1.00004 1.04977 0.81558 0.84760 0.85051 0.87687 0.87824 0.77284 0.95137 0.95101 0.92365 0.88190 0.88661 0.90649 0.89999 0.90259 0.90339 0.87433 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.83 9.75 101.05 0.98 -5.84 16 2 S 2.42 27.40 4.04 -107.50 -0.43 26.96 16 3 O -0.93 -13.71 18.01 -57.83 -1.04 -14.75 16 4 O -0.93 -11.51 17.50 -57.83 -1.01 -12.52 16 5 C -0.55 -5.46 0.74 -90.66 -0.07 -5.53 16 6 C 0.49 5.91 6.47 36.01 0.23 6.14 16 7 O -0.47 -6.41 15.07 -18.75 -0.28 -6.69 16 8 O -0.34 -4.40 6.11 -45.89 -0.28 -4.68 16 9 C 0.04 0.58 5.94 36.00 0.21 0.80 16 10 C 0.50 8.94 7.91 -10.99 -0.09 8.85 16 11 O -0.53 -11.46 15.57 -14.10 -0.22 -11.68 16 12 N -0.70 -13.40 5.55 -61.47 -0.34 -13.74 16 13 C 0.25 6.22 5.43 -5.19 -0.03 6.19 16 14 C -0.55 -14.10 9.28 -34.44 -0.32 -14.42 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.88 -25.12 13.29 55.43 0.74 -24.38 16 18 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.10 -0.75 5.30 -25.03 -0.13 -0.88 16 23 C -0.12 -0.78 6.91 -24.69 -0.17 -0.95 16 24 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 25 C -0.10 -0.86 6.05 -25.61 -0.16 -1.02 16 26 H 0.17 2.19 4.20 -51.92 -0.22 1.97 16 27 H 0.13 1.27 8.14 -51.92 -0.42 0.84 16 28 H 0.13 1.02 7.82 -51.92 -0.41 0.61 16 29 H 0.11 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 31 H 0.39 6.28 8.32 -40.82 -0.34 5.94 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.10 0.59 7.34 -51.93 -0.38 0.21 16 36 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 1.04 6.51 -51.93 -0.34 0.70 16 42 H 0.08 0.65 7.60 -51.93 -0.39 0.25 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -34.80 360.84 -8.08 -42.88 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.82 Total: 4.04 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.20 Total: -6.04 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.40 Total: -38.13 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.84 Total: -50.32 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 27.40 SS G_CDS: -0.43 Total: 26.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.80 -8.08 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750269130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.290 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds