Wall clock time and date at job start Tue Mar 31 2020 17:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.50699 * 110.01299 * 59.29904 * 5 2 1 7 7 O 1.20825 * 119.99725 * 135.70517 * 6 5 2 8 8 O 1.34225 * 120.00288 * 315.69768 * 6 5 2 9 9 C 1.45203 * 117.00255 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47309 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00305 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00163 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47084 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00073 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99942 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47021 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47044 * 239.99737 * 18 16 14 22 22 C 1.54265 * 110.02987 * 297.91050 * 5 2 1 23 23 C 1.54970 * 104.15832 * 217.13330 * 22 5 2 24 24 C 1.54891 * 102.77677 * 37.88890 * 23 22 5 25 25 C 1.53872 * 110.03339 * 180.69247 * 5 2 1 26 26 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 27 27 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 28 28 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 29 29 H 1.08998 * 109.47102 * 300.00319 * 9 8 6 30 30 H 1.09001 * 109.46966 * 60.00526 * 9 8 6 31 31 H 0.97002 * 119.99948 * 359.97438 * 12 10 9 32 32 H 1.08998 * 109.46906 * 299.99722 * 13 12 10 33 33 H 1.09001 * 109.47113 * 59.99900 * 13 12 10 34 34 H 0.97001 * 120.00311 * 180.02562 * 17 16 14 35 35 H 1.08994 * 110.48982 * 335.78052 * 22 5 2 36 36 H 1.09002 * 110.48580 * 98.42798 * 22 5 2 37 37 H 1.09001 * 110.72112 * 279.57546 * 23 22 5 38 38 H 1.08997 * 110.76371 * 156.21975 * 23 22 5 39 39 H 1.09000 * 110.48893 * 203.40344 * 24 23 22 40 40 H 1.08995 * 110.48348 * 80.75892 * 24 23 22 41 41 H 1.09004 * 110.02753 * 238.56981 * 25 5 2 42 42 H 1.09000 * 110.02848 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 1.5880 0.1012 -2.7150 7 8 2.2354 0.3553 -3.7031 8 8 0.3337 0.5643 -2.5971 9 6 -0.1801 1.3632 -3.6954 10 6 -1.5915 1.7920 -3.3874 11 8 -2.1131 1.4576 -2.3447 12 7 -2.2744 2.5470 -4.2706 13 6 -3.6464 2.9643 -3.9709 14 6 -4.1797 3.7934 -5.1109 15 1 -3.5585 3.9901 -5.9722 16 6 -5.4604 4.3006 -5.0542 17 7 -6.2170 4.0606 -4.0056 18 14 -6.1211 5.3289 -6.4669 19 1 -5.0801 5.4520 -7.5187 20 1 -7.3254 4.6723 -7.0361 21 1 -6.4829 6.6802 -5.9686 22 6 1.6342 -2.1736 -1.6823 23 6 2.7026 -2.9548 -2.4884 24 6 4.0311 -2.3406 -1.9813 25 6 3.7120 -0.8416 -1.8055 26 1 -0.3633 0.5970 -0.8365 27 1 -0.3633 0.4260 0.9352 28 1 -0.3634 -1.0230 -0.0987 29 1 0.4466 2.2452 -3.8273 30 1 -0.1714 0.7711 -4.6105 31 1 -1.8572 2.8148 -5.1044 32 1 -4.2734 2.0827 -3.8380 33 1 -3.6543 3.5571 -3.0562 34 1 -7.1182 4.4172 -3.9658 35 1 1.5324 -2.5904 -0.6804 36 1 0.6762 -2.1891 -2.2022 37 1 2.5809 -2.7827 -3.5579 38 1 2.6572 -4.0195 -2.2597 39 1 4.8214 -2.4785 -2.7192 40 1 4.3168 -2.7842 -1.0276 41 1 4.0166 -0.2883 -2.6940 42 1 4.2260 -0.4505 -0.9275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750269130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:45 Heat of formation + Delta-G solvation = -217.059874 kcal Electronic energy + Delta-G solvation = -27499.946535 eV Core-core repulsion = 23378.709963 eV Total energy + Delta-G solvation = -4121.236572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.28703 -40.53433 -39.05348 -38.23075 -37.61014 -37.33274 -36.17752 -34.41572 -31.89903 -30.60377 -30.41884 -29.55237 -28.46316 -24.93835 -23.98631 -21.95336 -21.79132 -21.66992 -20.38358 -19.31939 -19.23480 -18.32665 -18.12057 -17.58564 -17.26142 -17.14765 -16.95204 -16.75626 -16.30110 -16.10451 -15.75928 -15.13108 -14.76570 -14.48657 -14.32524 -14.15567 -14.02357 -13.97351 -13.69584 -13.56389 -13.41911 -13.30287 -13.19400 -12.90359 -12.76560 -12.57141 -12.28456 -12.22928 -12.17187 -12.14625 -12.04640 -12.04139 -11.47610 -11.46387 -11.39919 -10.90329 -10.82795 -9.91673 -8.29892 -6.45605 -1.30407 0.74442 0.80219 1.44350 1.44901 1.45778 1.54463 1.58017 2.22801 2.34102 2.44850 2.83462 2.95228 3.06007 3.18568 3.41593 3.66736 3.96834 4.00778 4.01712 4.05268 4.12850 4.13908 4.23418 4.30785 4.59727 4.63294 4.81183 4.89853 4.91273 5.10022 5.10844 5.13888 5.19509 5.24114 5.37273 5.42854 5.62608 5.83029 6.19621 6.63639 6.76404 7.20391 7.34847 8.82140 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002633 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.353092 B =10632.818651 C =11168.436394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.431 3.569 3 O -0.969 6.969 4 O -0.938 6.938 5 C -0.538 4.538 6 C 0.489 3.511 7 O -0.488 6.488 8 O -0.343 6.343 9 C 0.052 3.948 10 C 0.499 3.501 11 O -0.573 6.573 12 N -0.698 5.698 13 C 0.267 3.733 14 C -0.555 4.555 15 H 0.085 0.915 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.981 3.019 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.105 4.105 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.412 0.588 32 H -0.004 1.004 33 H -0.006 1.006 34 H 0.269 0.731 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.540 -14.600 1.976 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.614 3.386 3 O -0.966 6.966 4 O -0.936 6.936 5 C -0.626 4.626 6 C 0.330 3.670 7 O -0.373 6.373 8 O -0.259 6.259 9 C -0.024 4.024 10 C 0.285 3.715 11 O -0.453 6.453 12 N -0.350 5.350 13 C 0.145 3.855 14 C -0.593 4.593 15 H 0.103 0.897 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.177 1.177 20 H -0.205 1.205 21 H -0.207 1.207 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.143 4.143 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.178 0.822 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.248 0.752 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.783 -14.387 3.100 24.657 hybrid contribution -1.137 0.865 -1.357 1.971 sum 18.646 -13.522 1.744 23.099 Atomic orbital electron populations 1.30402 1.21212 1.14691 1.13684 1.07752 0.80082 0.74557 0.76200 1.93565 1.81227 1.35634 1.86199 1.93576 1.80864 1.67035 1.52090 1.30715 1.07034 1.08479 1.16373 1.22369 0.79650 0.77239 0.87756 1.90638 1.61173 1.54538 1.31000 1.86502 1.29906 1.63584 1.45928 1.22981 0.91890 0.97990 0.89555 1.20539 0.87790 0.79024 0.84164 1.90677 1.71107 1.56961 1.26602 1.46032 1.15974 1.51227 1.21755 1.18634 0.77471 0.93541 0.95900 1.21642 0.99942 1.33209 1.04525 0.89717 1.25994 0.96957 0.97419 0.99041 1.70123 1.09771 1.45876 1.30978 0.85158 0.78432 0.77565 0.78356 1.17704 1.20532 1.20695 1.22648 1.01206 0.85319 1.05381 1.22534 0.92576 1.00762 0.99516 1.22445 0.98669 0.91357 1.03281 1.22233 0.85544 1.01844 1.04716 0.83610 0.83989 0.82187 0.85551 0.84687 0.75157 0.98571 0.98843 0.92249 0.86340 0.87795 0.91235 0.87781 0.89125 0.89283 0.88253 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -13.31 9.75 113.37 1.10 -12.20 16 2 S 2.43 53.74 4.04 -56.49 -0.23 53.51 16 3 O -0.97 -29.17 18.01 -127.37 -2.29 -31.47 16 4 O -0.94 -22.42 17.50 -127.37 -2.23 -24.65 16 5 C -0.54 -9.96 0.74 -10.82 -0.01 -9.96 16 6 C 0.49 11.19 6.47 71.24 0.46 11.65 16 7 O -0.49 -12.40 15.07 21.97 0.33 -12.07 16 8 O -0.34 -8.61 6.11 -45.01 -0.28 -8.89 16 9 C 0.05 1.28 5.94 71.23 0.42 1.71 16 10 C 0.50 17.79 7.91 87.66 0.69 18.48 16 11 O -0.57 -25.16 15.57 15.77 0.25 -24.91 16 12 N -0.70 -26.58 5.55 -466.78 -2.59 -29.17 16 13 C 0.27 13.66 5.43 85.63 0.46 14.13 16 14 C -0.56 -28.66 9.28 25.60 0.24 -28.42 16 15 H 0.08 3.94 7.60 -2.91 -0.02 3.91 16 16 C 0.01 0.31 5.46 84.65 0.46 0.77 16 17 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 18 Si 0.98 40.96 29.54 68.60 2.03 42.99 16 19 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 22 C -0.11 -1.34 5.30 31.70 0.17 -1.17 16 23 C -0.12 -1.20 6.91 31.91 0.22 -0.98 16 24 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 25 C -0.11 -1.76 6.05 31.32 0.19 -1.57 16 26 H 0.15 3.84 4.20 -2.39 -0.01 3.83 16 27 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.16 2.23 7.82 -2.39 -0.02 2.21 16 29 H 0.13 2.65 8.13 -2.39 -0.02 2.63 16 30 H 0.14 2.55 8.13 -2.39 -0.02 2.53 16 31 H 0.41 12.55 8.32 -92.71 -0.77 11.78 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.12 1.05 7.34 -2.39 -0.02 1.03 16 36 H 0.10 1.13 7.83 -2.39 -0.02 1.11 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.84 6.51 -2.38 -0.02 1.82 16 42 H 0.08 1.27 7.60 -2.39 -0.02 1.25 16 Total: -1.00 -77.14 360.84 0.19 -76.95 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.28 Total: 20.19 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.63 Total: -8.71 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.30 Total: -82.95 kcal Atomic # 8 Polarization: -97.76 SS G_CDS: -4.22 Total: -101.98 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -0.23 Total: 53.51 kcal Total: -77.14 0.19 -76.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750269130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.113 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds