Wall clock time and date at job start Tue Mar 31 2020 17:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99772 * 2 1 4 4 O 1.20823 * 120.00474 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99755 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46780 * 179.97438 * 5 3 2 7 7 C 1.36943 * 119.99893 * 269.99776 * 6 5 3 8 8 H 1.08002 * 119.99677 * 321.01465 * 7 6 5 9 9 C 1.38807 * 120.00031 * 141.01517 * 7 6 5 10 10 N 1.31623 * 120.00003 * 336.76229 * 9 7 6 11 11 Si 1.86794 * 120.00087 * 156.76407 * 9 7 6 12 12 H 1.48502 * 109.47152 * 59.99897 * 11 9 7 13 13 H 1.48501 * 109.47377 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47319 * 299.99605 * 11 9 7 15 15 C 1.46497 * 119.99913 * 90.00117 * 6 5 3 16 16 C 1.50695 * 109.47096 * 84.11685 * 15 6 5 17 17 C 1.38845 * 119.77571 * 265.14947 * 16 15 6 18 18 C 1.37794 * 120.74690 * 180.02562 * 17 16 15 19 19 C 1.39031 * 119.85296 * 359.97438 * 18 17 16 20 20 O 1.34719 * 133.22381 * 179.69232 * 19 18 17 21 21 C 1.34964 * 110.86144 * 179.91780 * 20 19 18 22 22 C 1.46801 * 125.13877 * 180.15546 * 21 20 19 23 23 O 1.21589 * 119.99581 * 180.25529 * 22 21 20 24 24 O 1.34853 * 120.00294 * 0.25324 * 22 21 20 25 25 C 1.35902 * 109.71590 * 0.37727 * 21 20 19 26 26 C 1.40738 * 119.16558 * 0.02562 * 19 18 17 27 27 C 1.36616 * 119.78066 * 85.17338 * 16 15 6 28 28 H 1.08996 * 109.46735 * 60.00202 * 1 2 3 29 29 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47096 * 300.00357 * 1 2 3 31 31 H 1.09001 * 109.47375 * 60.00330 * 5 3 2 32 32 H 1.08996 * 109.47233 * 299.99650 * 5 3 2 33 33 H 0.96999 * 120.00394 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47053 * 324.11355 * 15 6 5 35 35 H 1.09003 * 109.47025 * 204.11188 * 15 6 5 36 36 H 1.07998 * 119.62807 * 0.02612 * 17 16 15 37 37 H 1.07993 * 120.07375 * 180.02562 * 18 17 16 38 38 H 0.96702 * 117.00201 * 180.02562 * 24 22 21 39 39 H 1.07992 * 126.96018 * 179.81537 * 25 21 20 40 40 H 1.08000 * 120.14233 * 359.95280 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6799 -0.0011 7 6 4.1754 3.3362 -1.1873 8 1 4.6374 2.8242 -2.0185 9 6 3.7779 4.6593 -1.3214 10 7 2.8404 5.1476 -0.5370 11 14 4.5733 5.7470 -2.6150 12 1 4.3422 5.1648 -3.9614 13 1 3.9765 7.1055 -2.5546 14 1 6.0332 5.8354 -2.3578 15 6 4.1898 3.3826 1.2674 16 6 5.5808 3.1020 1.7747 17 6 5.7883 2.0751 2.6859 18 6 7.0516 1.8015 3.1634 19 6 8.1341 2.5589 2.7304 20 8 9.4507 2.5332 3.0147 21 6 10.1099 3.4884 2.3258 22 6 11.5551 3.7360 2.3966 23 8 12.0521 4.6278 1.7364 24 8 12.3314 2.9744 3.1940 25 6 9.2326 4.1894 1.5603 26 6 7.9181 3.5986 1.8067 27 6 6.6291 3.8599 1.3354 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9558 0.7810 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 2.5623 6.0721 -0.6309 34 1 3.4595 3.0363 1.9986 35 1 4.0689 4.4548 1.1128 36 1 4.9501 1.4841 3.0244 37 1 7.2006 0.9999 3.8716 38 1 13.2772 3.1754 3.2077 39 1 9.4604 5.0154 0.9029 40 1 6.4622 4.6572 0.6263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831163942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:12 Heat of formation + Delta-G solvation = -112.169352 kcal Electronic energy + Delta-G solvation = -27974.782246 eV Core-core repulsion = 23722.650117 eV Total energy + Delta-G solvation = -4252.132129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.39421 -40.15096 -39.38984 -38.07037 -36.43779 -35.90689 -34.85760 -32.77750 -31.69785 -30.77742 -29.70204 -28.11293 -26.31782 -25.98123 -24.80948 -22.61841 -21.85121 -21.12485 -20.86506 -19.78225 -18.60094 -17.68810 -17.20123 -16.96380 -16.65149 -16.55551 -15.86286 -15.57759 -15.31303 -14.88814 -14.76994 -14.45470 -13.87881 -13.81146 -13.73751 -13.41787 -13.06457 -12.97352 -12.76419 -12.60029 -11.95980 -11.86720 -11.69121 -11.46780 -11.33407 -11.22610 -10.95280 -10.86934 -10.79563 -10.50786 -10.23446 -10.16790 -10.09518 -10.01276 -9.41245 -8.61360 -8.30678 -8.02727 -6.85242 -5.96540 -3.55549 0.47643 1.64960 1.81056 2.23161 2.77656 3.06287 3.27745 3.31540 3.35887 3.36966 3.56949 3.99280 4.36414 4.67547 4.75253 5.02126 5.13151 5.19318 5.31851 5.41067 5.53338 5.58403 5.60550 5.68260 5.72752 5.81013 5.96497 6.03141 6.05689 6.10309 6.20840 6.28562 6.44938 6.47776 6.66388 6.78054 7.11671 7.23229 7.26758 7.37042 7.56926 7.68679 8.28441 8.82569 8.97305 9.55317 10.12480 11.04282 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.003419 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.289938 B = 8187.336493 C = 9881.383409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.385 6.385 3 C 0.405 3.595 4 O -0.466 6.466 5 C 0.152 3.848 6 N -0.541 5.541 7 C -0.286 4.286 8 H 0.066 0.934 9 C 0.031 3.969 10 N -0.852 5.852 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.187 3.813 16 C -0.098 4.098 17 C -0.065 4.065 18 C -0.125 4.125 19 C 0.066 3.934 20 O -0.179 6.179 21 C -0.040 4.040 22 C 0.572 3.428 23 O -0.495 6.495 24 O -0.503 6.503 25 C -0.078 4.078 26 C -0.153 4.153 27 C -0.030 4.030 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.257 0.743 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.170 0.830 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 -6.980 7.726 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.303 6.303 3 C 0.242 3.758 4 O -0.348 6.348 5 C 0.022 3.978 6 N -0.258 5.258 7 C -0.415 4.415 8 H 0.084 0.916 9 C -0.174 4.174 10 N -0.489 5.489 11 Si 0.720 3.280 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.062 3.938 16 C -0.100 4.100 17 C -0.084 4.084 18 C -0.143 4.143 19 C 0.018 3.982 20 O -0.082 6.082 21 C -0.087 4.087 22 C 0.416 3.584 23 O -0.385 6.385 24 O -0.315 6.315 25 C -0.098 4.098 26 C -0.154 4.154 27 C -0.049 4.049 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.276 0.724 39 H 0.188 0.812 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.531 -6.477 7.728 13.208 hybrid contribution 0.573 0.857 -0.824 1.320 sum 9.104 -5.620 6.903 12.733 Atomic orbital electron populations 1.22975 0.79330 1.01874 1.01696 1.86635 1.21500 1.36696 1.85508 1.26930 0.94741 0.80888 0.73224 1.90727 1.66297 1.35731 1.42064 1.21048 0.84508 0.90147 1.02062 1.43710 1.72426 1.06988 1.02640 1.18945 1.35649 0.94897 0.92001 0.91626 1.25317 0.94916 0.99676 0.97524 1.70172 1.24358 1.14739 1.39637 0.86573 0.79623 0.79815 0.81980 1.20461 1.21445 1.20346 1.19882 0.86640 1.01146 0.86158 1.20878 0.99601 0.94527 0.95039 1.21082 0.95226 0.96477 0.95582 1.19862 0.89026 1.01308 1.04145 1.19721 0.81945 0.98316 0.98215 1.84027 1.18174 1.48286 1.57700 1.20224 0.89744 0.96305 1.02457 1.19009 0.84596 0.78512 0.76239 1.91005 1.73324 1.31302 1.42870 1.84680 1.25609 1.58627 1.62549 1.22860 0.90117 0.99082 0.97721 1.19903 0.94309 0.98998 1.02173 1.20364 0.88663 0.99114 0.96794 0.92849 0.89644 0.92964 0.89582 0.90604 0.93252 0.94151 0.88158 0.84960 0.85292 0.72378 0.81215 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.39 -6.88 10.57 -39.26 -0.41 -7.30 16 3 C 0.41 8.45 8.03 36.01 0.29 8.74 16 4 O -0.47 -11.77 16.18 -18.75 -0.30 -12.07 16 5 C 0.15 2.94 6.28 -5.19 -0.03 2.90 16 6 N -0.54 -12.09 1.89 -175.98 -0.33 -12.42 16 7 C -0.29 -7.15 9.42 -15.06 -0.14 -7.30 16 8 H 0.07 1.65 7.93 -52.49 -0.42 1.23 16 9 C 0.03 0.78 4.82 -17.43 -0.08 0.70 16 10 N -0.85 -23.24 11.80 55.49 0.65 -22.59 16 11 Si 0.89 20.24 29.61 -169.99 -5.03 15.20 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 C 0.19 3.90 5.34 -5.20 -0.03 3.87 16 16 C -0.10 -1.72 5.42 -104.99 -0.57 -2.28 16 17 C -0.07 -0.95 9.52 -39.52 -0.38 -1.33 16 18 C -0.12 -1.73 10.07 -39.45 -0.40 -2.13 16 19 C 0.07 1.03 7.41 -38.34 -0.28 0.75 16 20 O -0.18 -2.75 10.60 1.92 0.02 -2.73 16 21 C -0.04 -0.57 7.10 -36.96 -0.26 -0.83 16 22 C 0.57 7.20 8.31 34.19 0.28 7.49 16 23 O -0.50 -7.08 17.61 -19.33 -0.34 -7.42 16 24 O -0.50 -4.75 13.44 -42.75 -0.57 -5.32 16 25 C -0.08 -1.15 10.81 -37.22 -0.40 -1.56 16 26 C -0.15 -2.51 6.38 -105.20 -0.67 -3.18 16 27 C -0.03 -0.54 9.70 -39.61 -0.38 -0.92 16 28 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.09 1.57 8.04 -51.93 -0.42 1.16 16 32 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.04 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.10 2.39 5.76 -51.93 -0.30 2.09 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.42 1.60 9.11 45.56 0.42 2.02 16 39 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 40 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.57 363.96 -6.47 -39.04 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.64 Total: 3.60 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.99 Total: 6.51 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.32 Total: -35.01 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.61 Total: -34.83 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.57 -6.47 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831163942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.130 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds