Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34226 * 116.99797 * 2 1 4 4 O 1.20826 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99882 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47272 * 300.00321 * 5 3 2 7 7 C 1.53008 * 109.46736 * 59.99817 * 5 3 2 8 8 C 1.53002 * 109.46712 * 185.00185 * 7 5 3 9 9 C 1.53005 * 109.46863 * 180.02562 * 8 7 5 10 10 O 1.43744 * 109.63032 * 293.90019 * 9 8 7 11 11 C 1.44584 * 104.92323 * 215.71152 * 10 9 8 12 12 C 1.54912 * 101.63475 * 36.27267 * 11 10 9 13 13 O 1.43369 * 109.62885 * 174.68853 * 9 8 7 14 14 N 1.46496 * 109.47364 * 179.97438 * 5 3 2 15 15 C 1.34774 * 119.99544 * 85.00176 * 14 5 3 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 5 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 5 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47767 * 59.99657 * 23 21 19 25 25 H 1.48505 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46958 * 299.99344 * 23 21 19 27 27 H 1.08998 * 109.47114 * 299.99725 * 1 2 3 28 28 H 1.08994 * 109.47031 * 60.00404 * 1 2 3 29 29 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47666 * 304.99789 * 7 5 3 31 31 H 1.09000 * 109.47121 * 65.00343 * 7 5 3 32 32 H 1.09002 * 109.47172 * 299.99902 * 8 7 5 33 33 H 1.08996 * 109.47426 * 59.99757 * 8 7 5 34 34 H 1.08993 * 109.62954 * 54.30193 * 9 8 7 35 35 H 1.08997 * 111.08617 * 278.16082 * 11 10 9 36 36 H 1.09004 * 110.97998 * 154.33579 * 11 10 9 37 37 H 1.08998 * 110.69544 * 205.96419 * 12 11 10 38 38 H 1.09000 * 110.84497 * 82.82486 * 12 11 10 39 39 H 0.96994 * 120.00700 * 265.00296 * 14 5 3 40 40 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 41 41 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 42 42 H 0.97001 * 119.99701 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9565 0.7806 0.8891 7 6 4.1128 0.5815 -1.2503 8 6 5.6414 0.5516 -1.1896 9 6 6.1879 -0.1412 -2.4395 10 8 5.8039 -1.5264 -2.4307 11 6 6.9267 -2.2277 -3.0121 12 6 8.1234 -1.4128 -2.4609 13 8 7.6194 -0.0618 -2.4471 14 7 3.9818 2.6797 -0.0011 15 6 4.0757 3.3549 1.1615 16 8 3.8169 2.7995 2.2081 17 6 4.5025 4.8003 1.1611 18 16 4.5310 5.4215 2.8609 19 6 5.0481 7.0809 2.5716 20 1 5.2404 7.4187 1.5639 21 6 5.2093 7.9537 3.6387 22 7 4.9754 7.5418 4.8669 23 14 5.7568 9.7130 3.3319 24 1 4.7682 10.3939 2.4578 25 1 5.8522 10.4346 4.6263 26 1 7.0850 9.7094 2.6677 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7312 -0.4384 -1.2962 31 1 3.7951 1.1287 -2.1377 32 1 6.0232 1.5715 -1.1436 33 1 5.9592 0.0044 -0.3021 34 1 5.7896 0.3437 -3.3306 35 1 6.8943 -2.1856 -4.1007 36 1 6.9644 -3.2601 -2.6644 37 1 8.9842 -1.4960 -3.1243 38 1 8.3825 -1.7376 -1.4532 39 1 4.1891 3.1239 -0.8380 40 1 5.4984 4.8849 0.7262 41 1 3.7978 5.3871 0.5719 42 1 5.0878 8.1519 5.6126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871488062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = -241.011939 kcal Electronic energy + Delta-G solvation = -26331.445122 eV Core-core repulsion = 22209.169910 eV Total energy + Delta-G solvation = -4122.275212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -41.96280 -41.24488 -40.47156 -37.72395 -37.03056 -35.96444 -34.58933 -34.14075 -31.87107 -30.26087 -29.40851 -27.86522 -27.55162 -24.94632 -24.04580 -22.58247 -22.34086 -21.67192 -19.89301 -18.91340 -18.39790 -18.16612 -17.93042 -17.65415 -17.31792 -16.96812 -16.87955 -16.83216 -16.22034 -15.93619 -15.52893 -14.93758 -14.82411 -14.66257 -14.59383 -14.34484 -14.29481 -13.92922 -13.66792 -13.54821 -13.18715 -13.17718 -12.96492 -12.86649 -12.68831 -12.57623 -12.36663 -11.97340 -11.84316 -11.78211 -11.75034 -11.13429 -11.12999 -11.09001 -10.61705 -10.39761 -10.29720 -8.67488 -8.34708 -6.13042 1.03063 1.15626 1.31952 1.44125 1.46232 1.55441 1.80158 2.20344 2.27344 2.51945 2.96808 2.99364 3.29696 3.49732 3.65702 3.74287 3.83400 3.91222 4.04546 4.12556 4.18238 4.24958 4.28269 4.28949 4.30751 4.40323 4.48716 4.54803 4.66055 4.67539 4.76349 4.81127 4.96126 5.04678 5.19511 5.24753 5.27339 5.41516 6.10882 6.19565 6.32414 6.60280 7.06254 7.09613 8.74439 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.002820 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.320336 B = 9925.171948 C =11964.249028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.447 3.553 4 O -0.531 6.531 5 C 0.162 3.838 6 H 0.120 0.880 7 C -0.099 4.099 8 C -0.130 4.130 9 C 0.233 3.767 10 O -0.392 6.392 11 C 0.015 3.985 12 C 0.012 3.988 13 O -0.407 6.407 14 N -0.695 5.695 15 C 0.543 3.457 16 O -0.559 6.559 17 C -0.129 4.129 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.260 1.260 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.423 0.577 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -22.134 -22.061 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.289 3.711 4 O -0.419 6.419 5 C 0.055 3.945 6 H 0.138 0.862 7 C -0.137 4.137 8 C -0.167 4.167 9 C 0.138 3.862 10 O -0.313 6.313 11 C -0.061 4.061 12 C -0.064 4.064 13 O -0.329 6.329 14 N -0.350 5.350 15 C 0.330 3.670 16 O -0.436 6.436 17 C -0.280 4.280 18 S 0.077 5.923 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.184 1.184 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.261 0.739 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.835 -22.640 -20.078 30.271 hybrid contribution 0.241 1.922 -1.048 2.203 sum 1.077 -20.717 -21.126 29.608 Atomic orbital electron populations 1.23562 0.74862 1.05886 1.02222 1.86488 1.24897 1.32106 1.83583 1.24732 0.93205 0.81621 0.71515 1.90690 1.67643 1.37653 1.45963 1.20588 0.85634 0.83897 1.04422 0.86248 1.21644 0.95199 1.02580 0.94238 1.21976 0.94526 1.02227 0.98021 1.24154 0.80010 0.83687 0.98318 1.89187 1.40253 1.18490 1.83356 1.24564 0.82848 0.98871 0.99824 1.24427 0.98683 0.80323 1.02940 1.88901 1.20083 1.28115 1.95814 1.45523 1.68860 1.11241 1.09391 1.20132 0.75430 0.87870 0.83602 1.90692 1.49784 1.69994 1.33109 1.23351 1.06167 0.94860 1.03596 1.85572 1.89537 1.12281 1.04870 1.23176 1.52979 0.96609 0.96684 0.89825 1.26149 0.94705 1.04398 0.93959 1.70182 1.47067 1.37974 0.99610 0.84989 0.79244 0.75828 0.77838 1.18808 1.20368 1.18430 0.93246 0.91476 0.84383 0.87243 0.88401 0.89269 0.91117 0.88204 0.89189 0.85456 0.86310 0.90593 0.73867 0.86348 0.87556 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.18 10.37 -51.38 -0.53 -8.72 16 3 C 0.45 12.49 7.29 71.24 0.52 13.01 16 4 O -0.53 -18.86 16.07 21.96 0.35 -18.51 16 5 C 0.16 3.81 2.48 44.25 0.11 3.92 16 6 H 0.12 3.12 7.58 -2.39 -0.02 3.10 16 7 C -0.10 -1.46 4.62 30.60 0.14 -1.32 16 8 C -0.13 -2.04 5.19 30.60 0.16 -1.88 16 9 C 0.23 3.42 4.02 71.98 0.29 3.71 16 10 O -0.39 -5.73 10.93 -126.20 -1.38 -7.11 16 11 C 0.01 0.12 7.95 72.64 0.58 0.70 16 12 C 0.01 0.13 8.07 72.64 0.59 0.71 16 13 O -0.41 -7.06 11.22 -126.20 -1.42 -8.47 16 14 N -0.69 -18.37 4.06 -446.10 -1.81 -20.18 16 15 C 0.54 20.81 7.68 87.66 0.67 21.48 16 16 O -0.56 -26.55 15.52 -3.02 -0.05 -26.59 16 17 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.77 9.50 67.95 0.65 -31.13 16 20 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 23 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.53 7.72 -2.39 -0.02 1.51 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.45 7.75 -2.39 -0.02 1.43 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 8.13 8.60 -92.71 -0.80 7.33 16 40 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 41 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -86.06 377.29 2.36 -83.70 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.24 Total: 18.67 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.80 Total: 7.26 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.52 Total: -76.81 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -3.02 Total: -69.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -86.06 2.36 -83.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871488062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.312 kcal (2) G-P(sol) polarization free energy of solvation -86.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds