Wall clock time and date at job start Tue Mar 31 2020 17:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.50701 * 109.47194 * 185.00096 * 7 5 3 9 9 C 1.38257 * 119.94441 * 269.73243 * 8 7 5 10 10 C 1.38153 * 120.05455 * 179.72839 * 9 8 7 11 11 C 1.38734 * 119.93805 * 0.56601 * 10 9 8 12 12 O 1.35901 * 120.04919 * 179.68846 * 11 10 9 13 13 C 1.42898 * 117.00543 * 0.02562 * 12 11 10 14 14 F 1.39906 * 109.46966 * 60.00250 * 13 12 11 15 15 F 1.39904 * 109.47293 * 180.02562 * 13 12 11 16 16 F 1.39906 * 109.46904 * 300.00287 * 13 12 11 17 17 C 1.38727 * 119.89059 * 359.70406 * 11 10 9 18 18 C 1.38140 * 119.94670 * 0.02562 * 17 11 10 19 19 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 20 20 C 1.36936 * 120.00108 * 84.99780 * 19 5 3 21 21 H 1.07996 * 119.99949 * 359.97438 * 20 19 5 22 22 C 1.38810 * 119.99723 * 180.02562 * 20 19 5 23 23 N 1.31620 * 120.00177 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46914 * 59.99725 * 24 22 20 26 26 H 1.48499 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47362 * 299.99977 * 24 22 20 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09000 * 109.46948 * 305.00599 * 7 5 3 32 32 H 1.09002 * 109.46524 * 65.00560 * 7 5 3 33 33 H 1.07998 * 119.97683 * 359.97438 * 9 8 7 34 34 H 1.07995 * 120.02770 * 180.24678 * 10 9 8 35 35 H 1.08001 * 120.02548 * 180.02562 * 17 11 10 36 36 H 1.07997 * 119.97253 * 180.02562 * 18 17 11 37 37 H 0.96998 * 119.99825 * 264.99979 * 19 5 3 38 38 H 0.97005 * 119.99793 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 5.6142 0.5489 -1.2013 9 6 6.3448 1.5860 -1.7510 10 6 7.7251 1.5643 -1.6974 11 6 8.3782 0.4950 -1.1018 12 8 9.7361 0.4683 -1.0534 13 6 10.4279 1.5751 -1.6351 14 9 10.0517 2.7547 -0.9836 15 9 11.8075 1.3864 -1.4992 16 9 10.1018 1.6676 -2.9925 17 6 7.6428 -0.5471 -0.5559 18 6 6.2627 -0.5180 -0.6071 19 7 3.9816 2.6799 -0.0117 20 6 4.0813 3.3689 1.1675 21 1 3.8533 2.8769 2.1014 22 6 4.4743 4.7002 1.1622 23 7 4.7517 5.3001 0.0239 24 14 4.6096 5.6405 2.7707 25 1 5.6047 4.9760 3.6502 26 1 5.0453 7.0330 2.4948 27 1 3.2871 5.6596 3.4457 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.7265 -0.4421 -1.2973 32 1 3.7874 1.1227 -2.1437 33 1 5.8360 2.4156 -2.2191 34 1 8.2953 2.3766 -2.1233 35 1 8.1490 -1.3804 -0.0914 36 1 5.6898 -1.3288 -0.1820 37 1 4.1860 3.1219 -0.8505 38 1 5.0267 6.2303 0.0204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879984663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:46 Heat of formation + Delta-G solvation = -239.653481 kcal Electronic energy + Delta-G solvation = -28985.452537 eV Core-core repulsion = 24185.935541 eV Total energy + Delta-G solvation = -4799.516996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.42125 -48.17498 -47.98745 -40.18665 -39.66331 -37.93385 -35.99273 -34.86749 -32.62715 -30.91827 -30.44758 -28.41137 -27.11774 -25.87647 -24.16106 -23.19782 -22.74259 -21.39202 -19.86868 -19.55695 -19.11746 -18.95382 -17.48150 -16.80066 -16.64158 -16.21542 -15.69272 -15.42199 -15.18325 -15.14097 -14.80452 -14.61377 -14.47397 -14.38900 -14.21428 -14.10936 -13.87557 -13.62657 -13.54167 -13.16858 -13.10443 -13.01654 -12.64191 -12.07202 -11.83841 -11.55302 -11.26233 -11.03966 -10.89412 -10.84137 -10.72207 -10.23027 -10.18638 -9.92217 -9.73827 -9.03347 -8.83242 -8.17792 -7.20671 -5.89152 -3.18586 1.38058 1.51891 1.53186 2.88410 3.05034 3.30378 3.45224 3.45904 3.47233 3.79017 3.80812 4.06301 4.50268 4.83433 4.90598 5.02460 5.17719 5.37303 5.40718 5.46481 5.47614 5.50776 5.54156 5.69902 5.72434 5.80911 5.94937 6.07247 6.20202 6.29732 6.37496 6.45167 6.57876 6.85362 7.06206 7.13542 7.59463 8.24540 8.61968 9.39281 9.83781 10.19823 11.32066 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.004116 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.870595 B = 6800.935912 C = 8775.305306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.414 3.586 4 O -0.489 6.489 5 C 0.192 3.808 6 H 0.091 0.909 7 C -0.079 4.079 8 C -0.078 4.078 9 C -0.046 4.046 10 C -0.182 4.182 11 C 0.090 3.910 12 O -0.314 6.314 13 C 0.602 3.398 14 F -0.160 7.160 15 F -0.138 7.138 16 F -0.167 7.167 17 C -0.127 4.127 18 C -0.082 4.082 19 N -0.677 5.677 20 C -0.248 4.248 21 H 0.071 0.929 22 C 0.002 3.998 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.284 1.284 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.390 0.610 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -13.776 -5.177 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.294 6.294 3 C 0.251 3.749 4 O -0.372 6.372 5 C 0.076 3.924 6 H 0.109 0.891 7 C -0.117 4.117 8 C -0.078 4.078 9 C -0.064 4.064 10 C -0.201 4.201 11 C 0.048 3.952 12 O -0.235 6.235 13 C 0.512 3.488 14 F -0.142 7.142 15 F -0.119 7.119 16 F -0.149 7.149 17 C -0.145 4.145 18 C -0.100 4.100 19 N -0.315 5.315 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.211 1.211 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.225 0.775 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.105 -13.424 -4.953 15.556 hybrid contribution -0.102 1.342 0.577 1.464 sum 6.003 -12.082 -4.376 14.183 Atomic orbital electron populations 1.23050 0.79174 1.02222 1.01791 1.86648 1.21616 1.36184 1.84983 1.27361 0.94655 0.80779 0.72098 1.90625 1.66621 1.36505 1.43489 1.20089 0.84743 0.89330 0.98283 0.89112 1.20771 0.91017 1.01649 0.98270 1.19714 0.95442 0.94355 0.98265 1.20907 0.92227 0.97005 0.96268 1.21452 0.96785 0.97879 1.03957 1.18675 0.77850 0.97411 1.01247 1.86353 1.20289 1.41194 1.75634 1.19371 0.76890 0.77247 0.75323 1.93352 1.91030 1.48608 1.81244 1.93279 1.27798 1.95113 1.95732 1.93290 1.92387 1.95737 1.33534 1.20247 0.93298 0.97858 1.03128 1.20844 0.92640 0.98390 0.98153 1.42369 1.75286 1.05888 1.07986 1.19105 1.39492 0.93442 0.85857 0.91075 1.24734 1.01147 0.96607 0.97037 1.69630 1.50917 1.12051 1.24240 0.86253 0.77892 0.79085 0.82859 1.20972 1.21515 1.21075 0.89321 0.92766 0.92801 0.89399 0.90505 0.84686 0.85271 0.84967 0.84676 0.77470 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.38 -6.15 10.36 -39.26 -0.41 -6.56 16 3 C 0.41 8.19 7.30 36.00 0.26 8.46 16 4 O -0.49 -11.77 16.09 -18.76 -0.30 -12.07 16 5 C 0.19 3.61 2.78 -69.08 -0.19 3.42 16 6 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 7 C -0.08 -1.15 4.85 -27.88 -0.14 -1.29 16 8 C -0.08 -1.14 4.95 -104.60 -0.52 -1.66 16 9 C -0.05 -0.74 9.09 -39.61 -0.36 -1.10 16 10 C -0.18 -2.86 8.26 -39.43 -0.33 -3.18 16 11 C 0.09 1.32 6.48 -39.22 -0.25 1.06 16 12 O -0.31 -4.37 10.37 -19.43 -0.20 -4.57 16 13 C 0.60 7.83 3.42 101.05 0.35 8.17 16 14 F -0.16 -2.33 15.56 2.25 0.04 -2.30 16 15 F -0.14 -1.63 17.53 2.25 0.04 -1.59 16 16 F -0.17 -2.11 15.56 2.25 0.04 -2.08 16 17 C -0.13 -1.65 9.99 -39.44 -0.39 -2.04 16 18 C -0.08 -1.05 9.69 -39.61 -0.38 -1.43 16 19 N -0.68 -16.05 4.10 -54.55 -0.22 -16.27 16 20 C -0.25 -6.71 9.81 -15.06 -0.15 -6.85 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 23 N -0.92 -26.85 13.06 55.49 0.72 -26.13 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.14 2.26 7.59 -52.49 -0.40 1.86 16 34 H 0.13 1.98 5.10 -52.49 -0.27 1.71 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.39 9.69 7.04 -40.82 -0.29 9.40 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -31.68 346.69 -5.09 -36.77 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.86 Total: 7.23 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.13 Total: 5.00 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.50 Total: -42.40 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.91 Total: -23.20 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.68 -5.09 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879984663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.879 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds