Wall clock time and date at job start Tue Mar 31 2020 17:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.50701 * 109.47194 * 185.00096 * 7 5 3 9 9 C 1.38257 * 119.94441 * 269.73243 * 8 7 5 10 10 C 1.38153 * 120.05455 * 179.72839 * 9 8 7 11 11 C 1.38734 * 119.93805 * 0.56601 * 10 9 8 12 12 O 1.35901 * 120.04919 * 179.68846 * 11 10 9 13 13 C 1.42898 * 117.00543 * 0.02562 * 12 11 10 14 14 F 1.39906 * 109.46966 * 60.00250 * 13 12 11 15 15 F 1.39904 * 109.47293 * 180.02562 * 13 12 11 16 16 F 1.39906 * 109.46904 * 300.00287 * 13 12 11 17 17 C 1.38727 * 119.89059 * 359.70406 * 11 10 9 18 18 C 1.38140 * 119.94670 * 0.02562 * 17 11 10 19 19 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 20 20 C 1.36936 * 120.00108 * 84.99780 * 19 5 3 21 21 H 1.07996 * 119.99949 * 359.97438 * 20 19 5 22 22 C 1.38810 * 119.99723 * 180.02562 * 20 19 5 23 23 N 1.31620 * 120.00177 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46914 * 59.99725 * 24 22 20 26 26 H 1.48499 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47362 * 299.99977 * 24 22 20 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09000 * 109.46948 * 305.00599 * 7 5 3 32 32 H 1.09002 * 109.46524 * 65.00560 * 7 5 3 33 33 H 1.07998 * 119.97683 * 359.97438 * 9 8 7 34 34 H 1.07995 * 120.02770 * 180.24678 * 10 9 8 35 35 H 1.08001 * 120.02548 * 180.02562 * 17 11 10 36 36 H 1.07997 * 119.97253 * 180.02562 * 18 17 11 37 37 H 0.96998 * 119.99825 * 264.99979 * 19 5 3 38 38 H 0.97005 * 119.99793 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 5.6142 0.5489 -1.2013 9 6 6.3448 1.5860 -1.7510 10 6 7.7251 1.5643 -1.6974 11 6 8.3782 0.4950 -1.1018 12 8 9.7361 0.4683 -1.0534 13 6 10.4279 1.5751 -1.6351 14 9 10.0517 2.7547 -0.9836 15 9 11.8075 1.3864 -1.4992 16 9 10.1018 1.6676 -2.9925 17 6 7.6428 -0.5471 -0.5559 18 6 6.2627 -0.5180 -0.6071 19 7 3.9816 2.6799 -0.0117 20 6 4.0813 3.3689 1.1675 21 1 3.8533 2.8769 2.1014 22 6 4.4743 4.7002 1.1622 23 7 4.7517 5.3001 0.0239 24 14 4.6096 5.6405 2.7707 25 1 5.6047 4.9760 3.6502 26 1 5.0453 7.0330 2.4948 27 1 3.2871 5.6596 3.4457 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.7265 -0.4421 -1.2973 32 1 3.7874 1.1227 -2.1437 33 1 5.8360 2.4156 -2.2191 34 1 8.2953 2.3766 -2.1233 35 1 8.1490 -1.3804 -0.0914 36 1 5.6898 -1.3288 -0.1820 37 1 4.1860 3.1219 -0.8505 38 1 5.0267 6.2303 0.0204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879984663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:45 Heat of formation + Delta-G solvation = -258.616823 kcal Electronic energy + Delta-G solvation = -28986.274850 eV Core-core repulsion = 24185.935541 eV Total energy + Delta-G solvation = -4800.339308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -51.47534 -49.19590 -49.07305 -41.41157 -41.06938 -39.08517 -37.49052 -36.50600 -34.33928 -32.03086 -32.00930 -29.88887 -28.29500 -27.05874 -25.77497 -24.75475 -23.89730 -22.56021 -21.36219 -20.64083 -20.18160 -20.01315 -19.39179 -18.33966 -17.80720 -17.59675 -17.15417 -16.62735 -16.53470 -16.25004 -16.16058 -15.83832 -15.54931 -15.49285 -15.44713 -15.24205 -15.19981 -15.14677 -14.96148 -14.38181 -14.29234 -14.16858 -14.14534 -13.45863 -13.10274 -12.92505 -12.86524 -12.57622 -12.46214 -12.35985 -12.11779 -11.90100 -11.80844 -11.59761 -11.50604 -10.90637 -9.94050 -9.33044 -9.15102 -7.98206 -5.26752 0.25056 0.42196 0.46559 1.43915 1.46296 1.48444 1.51814 1.82464 1.99378 2.52960 2.68190 2.75861 2.98228 3.41555 3.70188 3.71902 3.83566 3.93426 4.17113 4.19504 4.35369 4.40869 4.43818 4.47829 4.49631 4.57352 4.77659 4.86922 5.02895 5.11367 5.17050 5.32761 5.46016 5.48653 5.58999 5.72912 6.03470 6.19980 7.07432 7.30173 7.94284 8.18887 9.23448 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.004116 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.870595 B = 6800.935912 C = 8775.305306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.424 3.576 4 O -0.539 6.539 5 C 0.188 3.812 6 H 0.103 0.897 7 C -0.066 4.066 8 C -0.087 4.087 9 C -0.067 4.067 10 C -0.200 4.200 11 C 0.080 3.920 12 O -0.313 6.313 13 C 0.606 3.394 14 F -0.172 7.172 15 F -0.129 7.129 16 F -0.166 7.166 17 C -0.122 4.122 18 C -0.071 4.071 19 N -0.692 5.692 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.059 4.059 23 N -0.956 5.956 24 Si 0.963 3.037 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.285 1.285 28 H 0.136 0.864 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.380 0.620 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 -16.966 -4.286 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.264 3.736 4 O -0.427 6.427 5 C 0.074 3.926 6 H 0.121 0.879 7 C -0.104 4.104 8 C -0.087 4.087 9 C -0.085 4.085 10 C -0.218 4.218 11 C 0.038 3.962 12 O -0.234 6.234 13 C 0.515 3.485 14 F -0.154 7.154 15 F -0.110 7.110 16 F -0.148 7.148 17 C -0.140 4.140 18 C -0.088 4.088 19 N -0.329 5.329 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.252 4.252 23 N -0.605 5.605 24 Si 0.792 3.208 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.212 1.212 28 H 0.154 0.846 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.192 0.808 37 H 0.214 0.786 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.817 -16.696 -4.052 18.139 hybrid contribution -0.100 2.127 0.278 2.148 sum 5.717 -14.569 -3.774 16.099 Atomic orbital electron populations 1.23410 0.76785 1.05190 1.01406 1.86574 1.23642 1.33634 1.84079 1.26996 0.94887 0.80905 0.70816 1.90622 1.67713 1.38319 1.46011 1.20357 0.84072 0.87247 1.00930 0.87910 1.20721 0.90981 1.02957 0.95756 1.19781 0.95351 0.94752 0.98861 1.20876 0.92656 0.97396 0.97568 1.21457 0.96753 0.98569 1.05049 1.18915 0.78183 0.97677 1.01421 1.86345 1.20017 1.41264 1.75724 1.19314 0.77134 0.76803 0.75252 1.93331 1.91218 1.49330 1.81519 1.93299 1.27000 1.95014 1.95689 1.93292 1.92432 1.95697 1.33357 1.20688 0.93509 0.97881 1.01965 1.21259 0.92780 0.98295 0.96494 1.42397 1.76421 1.07602 1.06514 1.19403 1.37276 0.93622 0.87038 0.90969 1.25422 1.02469 0.97815 0.99536 1.69770 1.53168 1.11753 1.25796 0.85388 0.77743 0.77699 0.79981 1.19910 1.22104 1.21190 0.84604 0.93530 0.92996 0.85607 0.91096 0.86755 0.86019 0.81892 0.80819 0.78618 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.70 10.36 -51.41 -0.53 -11.23 16 3 C 0.42 16.15 7.30 71.23 0.52 16.67 16 4 O -0.54 -25.92 16.09 21.94 0.35 -25.56 16 5 C 0.19 6.80 2.78 44.25 0.12 6.92 16 6 H 0.10 3.49 8.08 -2.38 -0.02 3.47 16 7 C -0.07 -1.80 4.85 29.85 0.14 -1.66 16 8 C -0.09 -2.42 4.95 -19.85 -0.10 -2.52 16 9 C -0.07 -2.19 9.09 22.25 0.20 -1.99 16 10 C -0.20 -6.36 8.26 22.37 0.18 -6.17 16 11 C 0.08 2.24 6.48 22.51 0.15 2.39 16 12 O -0.31 -8.33 10.37 -92.43 -0.96 -9.29 16 13 C 0.61 15.54 3.42 113.37 0.39 15.93 16 14 F -0.17 -5.08 15.56 44.97 0.70 -4.38 16 15 F -0.13 -2.93 17.53 44.97 0.79 -2.14 16 16 F -0.17 -4.20 15.56 44.97 0.70 -3.50 16 17 C -0.12 -2.78 9.99 22.36 0.22 -2.56 16 18 C -0.07 -1.55 9.69 22.25 0.22 -1.33 16 19 N -0.69 -33.10 4.10 -326.50 -1.34 -34.44 16 20 C -0.24 -13.16 9.81 84.03 0.82 -12.33 16 21 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 22 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 23 N -0.96 -57.59 13.06 21.65 0.28 -57.31 16 24 Si 0.96 46.64 29.55 68.60 2.03 48.67 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.05 1.27 8.13 -2.38 -0.02 1.25 16 31 H 0.13 2.45 7.93 -2.39 -0.02 2.43 16 32 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.11 4.13 7.59 -2.91 -0.02 4.11 16 34 H 0.12 3.92 5.10 -2.91 -0.01 3.91 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.38 19.56 7.04 -92.71 -0.65 18.90 16 38 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -70.41 346.69 7.03 -63.37 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.47 Total: 23.56 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.54 Total: 12.25 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -1.06 Total: -91.75 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.14 Total: -46.08 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 2.19 Total: -10.02 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -70.41 7.03 -63.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879984663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.244 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds