Wall clock time and date at job start Tue Mar 31 2020 17:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00138 * 2 1 4 4 O 1.20824 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00385 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47216 * 300.00447 * 5 3 2 7 7 N 1.46902 * 109.47570 * 180.02562 * 5 3 2 8 8 C 1.46895 * 111.00258 * 84.99811 * 7 5 3 9 9 C 1.50699 * 109.47227 * 180.02562 * 8 7 5 10 10 H 1.07995 * 119.99997 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99661 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47325 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47026 * 120.00420 * 13 11 9 16 16 H 1.48503 * 109.46810 * 240.00139 * 13 11 9 17 17 C 1.50706 * 109.47289 * 60.00065 * 5 3 2 18 18 C 1.38163 * 120.02719 * 99.97508 * 17 5 3 19 19 C 1.38243 * 120.05442 * 180.02562 * 18 17 5 20 20 C 1.38289 * 120.11362 * 0.02562 * 19 18 17 21 21 C 1.38125 * 120.05159 * 359.97438 * 20 19 18 22 22 C 1.38708 * 120.02782 * 280.00295 * 17 5 3 23 23 O 1.35898 * 120.05505 * 359.97438 * 22 17 5 24 24 C 1.42904 * 116.99940 * 179.97438 * 23 22 17 25 25 F 1.39902 * 109.46987 * 59.99784 * 24 23 22 26 26 F 1.39900 * 109.47085 * 179.97438 * 24 23 22 27 27 F 1.39895 * 109.47019 * 299.99908 * 24 23 22 28 28 H 1.08998 * 109.47327 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46742 * 299.99458 * 1 2 3 31 31 H 1.00905 * 110.99531 * 321.04816 * 7 5 3 32 32 H 1.09003 * 109.47160 * 300.00903 * 8 7 5 33 33 H 1.09002 * 109.47044 * 60.00067 * 8 7 5 34 34 H 0.96998 * 119.99749 * 179.97438 * 12 11 9 35 35 H 1.08001 * 119.97035 * 0.03182 * 18 17 5 36 36 H 1.08004 * 119.94085 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.27537 * 20 19 18 38 38 H 1.08000 * 120.02369 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3666 9 6 4.4480 4.6653 1.3272 10 1 4.6722 5.1364 0.3816 11 6 4.5540 5.3852 2.4984 12 7 4.2805 4.8117 3.6499 13 14 5.0862 7.1751 2.4495 14 1 5.3326 7.5800 1.0422 15 1 4.0157 8.0258 3.0287 16 1 6.3330 7.3425 3.2387 17 6 4.1047 0.5920 -1.2314 18 6 4.4913 1.3425 -2.3252 19 6 4.9848 0.7166 -3.4547 20 6 5.0923 -0.6615 -3.4933 21 6 4.7071 -1.4162 -2.4025 22 6 4.2120 -0.7904 -1.2674 23 8 3.8323 -1.5308 -0.1929 24 6 3.9701 -2.9490 -0.3009 25 9 5.3131 -3.2714 -0.5239 26 9 3.5372 -3.5513 0.8854 27 9 3.1955 -3.4128 -1.3695 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.3825 3.2385 -0.5915 32 1 3.0252 3.1503 1.8108 33 1 4.7257 2.6475 1.9649 34 1 4.3555 5.3181 4.4738 35 1 4.4080 2.4189 -2.2976 36 1 5.2869 1.3051 -4.3085 37 1 5.4823 -1.1478 -4.3752 38 1 4.7916 -2.4925 -2.4329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932221819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:31 Heat of formation + Delta-G solvation = -243.477992 kcal Electronic energy + Delta-G solvation = -29773.134641 eV Core-core repulsion = 24973.451801 eV Total energy + Delta-G solvation = -4799.682839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -50.51988 -48.22785 -48.11962 -40.78358 -39.86023 -37.76933 -36.57101 -35.14325 -32.88508 -31.08289 -30.41181 -28.27839 -27.05726 -26.04044 -25.00819 -22.81448 -22.39284 -21.69995 -20.30092 -19.66248 -19.23306 -18.96521 -17.56352 -17.17085 -16.74699 -16.26831 -16.09505 -15.75941 -15.28031 -15.20888 -14.86230 -14.66237 -14.56281 -14.48921 -14.44952 -14.22809 -14.10397 -13.87416 -13.45520 -13.30149 -13.10796 -12.88616 -12.36140 -12.20013 -12.14427 -11.81034 -11.65478 -11.18676 -11.16820 -10.82639 -10.66323 -10.56398 -10.40883 -10.02105 -9.26791 -8.92295 -8.57958 -8.49714 -7.71956 -6.05374 -4.07352 1.15153 1.21793 1.46140 2.48531 2.75020 2.99268 3.31384 3.38337 3.43032 3.59937 3.71237 3.94470 4.36643 4.48534 4.63630 4.87624 4.95759 5.04280 5.17901 5.22934 5.29699 5.31504 5.41309 5.43789 5.60163 5.63784 5.86018 6.04884 6.19506 6.43337 6.54008 6.59063 6.87905 7.01922 7.34605 7.65059 7.98207 8.05114 8.11097 8.42490 8.99197 9.56869 11.06132 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003696 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.316816 B = 7573.576604 C = 7975.474931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.437 3.563 4 O -0.496 6.496 5 C 0.138 3.862 6 H 0.123 0.877 7 N -0.651 5.651 8 C 0.189 3.811 9 C -0.512 4.512 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.901 3.099 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.074 4.074 18 C -0.050 4.050 19 C -0.141 4.141 20 C -0.081 4.081 21 C -0.198 4.198 22 C 0.120 3.880 23 O -0.295 6.295 24 C 0.603 3.397 25 F -0.168 7.168 26 F -0.133 7.133 27 F -0.168 7.168 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.345 0.655 32 H -0.002 1.002 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -17.352 -12.918 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.277 3.723 4 O -0.382 6.382 5 C 0.025 3.975 6 H 0.141 0.859 7 N -0.283 5.283 8 C 0.063 3.937 9 C -0.551 4.551 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.729 3.271 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.160 4.160 20 C -0.099 4.099 21 C -0.216 4.216 22 C 0.077 3.923 23 O -0.214 6.214 24 C 0.512 3.488 25 F -0.150 7.150 26 F -0.114 7.114 27 F -0.150 7.150 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.567 -17.113 -12.542 21.275 hybrid contribution -0.881 0.651 0.432 1.178 sum -2.448 -16.462 -12.110 20.583 Atomic orbital electron populations 1.23194 0.77575 1.03044 1.02311 1.86613 1.22484 1.33852 1.83986 1.25305 0.93372 0.81512 0.72083 1.90688 1.66531 1.36278 1.44663 1.20235 0.84442 0.95219 0.97630 0.85898 1.61199 1.52691 0.97830 1.16550 1.19744 0.96161 0.95595 0.82195 1.21086 1.45558 0.95078 0.93365 0.91714 1.24969 0.95444 0.98744 0.95315 1.69970 1.49082 1.36781 0.97723 0.86392 0.78113 0.84440 0.78159 1.19596 1.21093 1.20985 1.18907 1.03590 0.88477 0.96619 1.21073 0.94131 1.01186 0.90386 1.21224 1.01489 0.94486 0.98761 1.20925 0.97683 0.93927 0.97373 1.21385 1.05647 1.00554 0.94020 1.18458 0.98454 0.90031 0.85365 1.86521 1.81072 1.14086 1.39753 1.19387 0.74496 0.80450 0.74483 1.93292 1.34543 1.92866 1.94318 1.93302 1.89753 1.81679 1.46662 1.93279 1.75685 1.89177 1.56839 0.92305 0.88651 0.92043 0.83531 0.98385 0.94996 0.92886 0.83360 0.85169 0.85288 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -5.71 9.34 -43.20 -0.40 -6.11 16 3 C 0.44 8.14 7.07 36.00 0.25 8.39 16 4 O -0.50 -10.56 15.05 -18.75 -0.28 -10.84 16 5 C 0.14 2.52 2.38 -70.02 -0.17 2.35 16 6 H 0.12 2.31 7.51 -51.93 -0.39 1.92 16 7 N -0.65 -13.62 4.93 -110.46 -0.54 -14.16 16 8 C 0.19 4.91 5.13 -4.98 -0.03 4.89 16 9 C -0.51 -14.38 9.32 -34.44 -0.32 -14.70 16 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C -0.07 -1.15 5.06 -104.47 -0.53 -1.68 16 18 C -0.05 -0.68 9.32 -39.61 -0.37 -1.05 16 19 C -0.14 -1.56 10.04 -39.56 -0.40 -1.96 16 20 C -0.08 -0.84 10.04 -39.60 -0.40 -1.23 16 21 C -0.20 -2.33 8.26 -39.43 -0.33 -2.65 16 22 C 0.12 1.69 6.22 -39.22 -0.24 1.44 16 23 O -0.30 -4.15 8.67 -27.98 -0.24 -4.40 16 24 C 0.60 7.06 3.42 101.05 0.35 7.41 16 25 F -0.17 -1.88 15.56 2.25 0.04 -1.85 16 26 F -0.13 -1.53 17.53 2.25 0.04 -1.49 16 27 F -0.17 -1.83 15.56 2.25 0.04 -1.80 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.34 7.17 7.28 -39.29 -0.29 6.88 16 32 H 0.00 -0.05 7.62 -51.93 -0.40 -0.45 16 33 H 0.03 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.15 2.06 6.84 -52.49 -0.36 1.70 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.35 5.10 -52.49 -0.27 1.09 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -31.59 342.13 -5.47 -37.06 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.77 Total: 3.62 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.21 Total: 4.23 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.19 Total: -40.25 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.93 Total: -21.35 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.59 -5.47 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932221819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.417 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds