Wall clock time and date at job start Tue Mar 31 2020 17:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00138 * 2 1 4 4 O 1.20824 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00385 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47216 * 300.00447 * 5 3 2 7 7 N 1.46902 * 109.47570 * 180.02562 * 5 3 2 8 8 C 1.46895 * 111.00258 * 84.99811 * 7 5 3 9 9 C 1.50699 * 109.47227 * 180.02562 * 8 7 5 10 10 H 1.07995 * 119.99997 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99702 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00262 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99661 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47325 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47026 * 120.00420 * 13 11 9 16 16 H 1.48503 * 109.46810 * 240.00139 * 13 11 9 17 17 C 1.50706 * 109.47289 * 60.00065 * 5 3 2 18 18 C 1.38163 * 120.02719 * 99.97508 * 17 5 3 19 19 C 1.38243 * 120.05442 * 180.02562 * 18 17 5 20 20 C 1.38289 * 120.11362 * 0.02562 * 19 18 17 21 21 C 1.38125 * 120.05159 * 359.97438 * 20 19 18 22 22 C 1.38708 * 120.02782 * 280.00295 * 17 5 3 23 23 O 1.35898 * 120.05505 * 359.97438 * 22 17 5 24 24 C 1.42904 * 116.99940 * 179.97438 * 23 22 17 25 25 F 1.39902 * 109.46987 * 59.99784 * 24 23 22 26 26 F 1.39900 * 109.47085 * 179.97438 * 24 23 22 27 27 F 1.39895 * 109.47019 * 299.99908 * 24 23 22 28 28 H 1.08998 * 109.47327 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46742 * 299.99458 * 1 2 3 31 31 H 1.00905 * 110.99531 * 321.04816 * 7 5 3 32 32 H 1.09003 * 109.47160 * 300.00903 * 8 7 5 33 33 H 1.09002 * 109.47044 * 60.00067 * 8 7 5 34 34 H 0.96998 * 119.99749 * 179.97438 * 12 11 9 35 35 H 1.08001 * 119.97035 * 0.03182 * 18 17 5 36 36 H 1.08004 * 119.94085 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.27537 * 20 19 18 38 38 H 1.08000 * 120.02369 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3666 9 6 4.4480 4.6653 1.3272 10 1 4.6722 5.1364 0.3816 11 6 4.5540 5.3852 2.4984 12 7 4.2805 4.8117 3.6499 13 14 5.0862 7.1751 2.4495 14 1 5.3326 7.5800 1.0422 15 1 4.0157 8.0258 3.0287 16 1 6.3330 7.3425 3.2387 17 6 4.1047 0.5920 -1.2314 18 6 4.4913 1.3425 -2.3252 19 6 4.9848 0.7166 -3.4547 20 6 5.0923 -0.6615 -3.4933 21 6 4.7071 -1.4162 -2.4025 22 6 4.2120 -0.7904 -1.2674 23 8 3.8323 -1.5308 -0.1929 24 6 3.9701 -2.9490 -0.3009 25 9 5.3131 -3.2714 -0.5239 26 9 3.5372 -3.5513 0.8854 27 9 3.1955 -3.4128 -1.3695 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.3825 3.2385 -0.5915 32 1 3.0252 3.1503 1.8108 33 1 4.7257 2.6475 1.9649 34 1 4.3555 5.3181 4.4738 35 1 4.4080 2.4189 -2.2976 36 1 5.2869 1.3051 -4.3085 37 1 5.4823 -1.1478 -4.3752 38 1 4.7916 -2.4925 -2.4329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932221819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:25 Heat of formation + Delta-G solvation = -263.252939 kcal Electronic energy + Delta-G solvation = -29773.992147 eV Core-core repulsion = 24973.451801 eV Total energy + Delta-G solvation = -4800.540346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -51.43464 -49.14893 -49.01784 -42.06172 -41.06213 -38.83780 -37.97430 -36.76082 -34.84231 -32.58431 -31.37434 -29.59450 -28.64541 -26.99507 -26.60025 -24.18865 -23.53037 -23.28855 -21.69459 -20.64016 -20.15569 -19.94155 -19.09388 -18.74466 -17.99812 -17.87542 -17.36801 -16.91436 -16.70550 -16.24112 -16.14248 -15.81012 -15.57042 -15.48995 -15.42956 -15.30685 -15.13523 -15.02444 -14.89302 -14.63706 -14.42206 -14.14512 -14.08730 -13.77199 -13.35491 -13.19503 -12.92495 -12.74954 -12.69237 -12.39609 -12.14435 -12.05396 -11.87890 -11.86575 -11.33961 -10.70997 -9.93958 -9.60367 -9.48048 -8.24082 -6.34978 0.15194 0.25751 0.50950 1.00513 1.41914 1.42698 1.56624 1.68348 1.80944 2.39322 2.63048 2.77988 3.01141 3.10557 3.15099 3.47429 3.75345 3.83340 3.93755 3.99334 4.23192 4.23668 4.25727 4.44397 4.53788 4.59485 4.87618 4.92723 5.09798 5.14915 5.23409 5.30300 5.46507 5.52918 5.58556 5.90730 5.94872 6.16346 6.39640 6.61374 6.80925 7.34924 8.88544 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003696 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.316816 B = 7573.576604 C = 7975.474931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.442 3.558 4 O -0.531 6.531 5 C 0.140 3.860 6 H 0.109 0.891 7 N -0.640 5.640 8 C 0.207 3.793 9 C -0.531 4.531 10 H 0.070 0.930 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.976 3.024 14 H -0.259 1.259 15 H -0.281 1.281 16 H -0.276 1.276 17 C -0.099 4.099 18 C -0.064 4.064 19 C -0.133 4.133 20 C -0.067 4.067 21 C -0.198 4.198 22 C 0.109 3.891 23 O -0.315 6.315 24 C 0.608 3.392 25 F -0.163 7.163 26 F -0.133 7.133 27 F -0.160 7.160 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.053 0.947 31 H 0.345 0.655 32 H -0.038 1.038 33 H 0.008 0.992 34 H 0.265 0.735 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -18.037 -15.381 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.284 3.716 4 O -0.420 6.420 5 C 0.027 3.973 6 H 0.126 0.874 7 N -0.271 5.271 8 C 0.080 3.920 9 C -0.570 4.570 10 H 0.089 0.911 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.800 3.200 14 H -0.182 1.182 15 H -0.207 1.207 16 H -0.202 1.202 17 C -0.100 4.100 18 C -0.082 4.082 19 C -0.151 4.151 20 C -0.084 4.084 21 C -0.216 4.216 22 C 0.066 3.934 23 O -0.235 6.235 24 C 0.517 3.483 25 F -0.145 7.145 26 F -0.114 7.114 27 F -0.142 7.142 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.165 0.835 32 H -0.021 1.021 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.814 -17.843 -15.029 23.344 hybrid contribution -1.170 0.703 1.142 1.779 sum -1.983 -17.140 -13.887 22.149 Atomic orbital electron populations 1.23548 0.75386 1.05617 1.02238 1.86587 1.24560 1.32197 1.83233 1.25256 0.93528 0.81693 0.71161 1.90664 1.67287 1.37453 1.46590 1.20133 0.84656 0.93384 0.99124 0.87377 1.61039 1.53301 0.99301 1.13489 1.19325 0.93221 0.95156 0.84335 1.21469 1.45614 0.96058 0.93813 0.91146 1.25971 0.95220 1.03777 0.94778 1.70106 1.50045 1.38845 0.98539 0.85229 0.77739 0.78193 0.78796 1.18242 1.20689 1.20188 1.18711 1.06075 0.89326 0.95929 1.21140 0.95029 1.00876 0.91158 1.21558 0.99899 0.95233 0.98394 1.21414 0.95532 0.93566 0.97910 1.21662 1.04932 1.01519 0.93510 1.18559 0.99135 0.89551 0.86170 1.86482 1.81336 1.15285 1.40368 1.19255 0.74708 0.79676 0.74642 1.93298 1.34232 1.92731 1.94286 1.93302 1.89785 1.81543 1.46814 1.93290 1.75530 1.88970 1.56430 0.91759 0.84716 0.92829 0.83470 1.02072 0.97344 0.92608 0.84305 0.82048 0.81271 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.35 -11.46 9.34 -47.63 -0.44 -11.90 16 3 C 0.44 17.16 7.07 71.23 0.50 17.67 16 4 O -0.53 -23.73 15.05 21.97 0.33 -23.40 16 5 C 0.14 5.38 2.38 43.42 0.10 5.48 16 6 H 0.11 4.39 7.51 -2.39 -0.02 4.37 16 7 N -0.64 -28.16 4.93 -503.38 -2.48 -30.64 16 8 C 0.21 11.39 5.13 85.56 0.44 11.82 16 9 C -0.53 -30.65 9.32 25.60 0.24 -30.41 16 10 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 11 C 0.00 0.04 5.46 84.65 0.46 0.50 16 12 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 13 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 C -0.10 -3.08 5.06 -19.77 -0.10 -3.18 16 18 C -0.06 -1.71 9.32 22.25 0.21 -1.50 16 19 C -0.13 -2.52 10.04 22.28 0.22 -2.30 16 20 C -0.07 -1.11 10.04 22.25 0.22 -0.88 16 21 C -0.20 -4.14 8.26 22.36 0.18 -3.95 16 22 C 0.11 2.97 6.22 22.50 0.14 3.11 16 23 O -0.31 -8.80 8.67 -84.22 -0.73 -9.53 16 24 C 0.61 13.57 3.42 113.37 0.39 13.95 16 25 F -0.16 -3.41 15.56 44.97 0.70 -2.71 16 26 F -0.13 -2.98 17.53 44.97 0.79 -2.19 16 27 F -0.16 -3.19 15.56 44.97 0.70 -2.49 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 31 H 0.35 15.08 7.28 -89.69 -0.65 14.43 16 32 H -0.04 -2.36 7.62 -2.39 -0.02 -2.38 16 33 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.14 3.89 6.84 -2.91 -0.02 3.87 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 2.57 5.10 -2.91 -0.01 2.55 16 Total: -1.00 -70.79 342.13 5.86 -64.92 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.48 Total: 16.28 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 4.21 Total: 12.14 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.20 Total: -87.92 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.84 Total: -44.84 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 2.19 Total: -7.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.79 5.86 -64.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932221819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.331 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds