Wall clock time and date at job start Tue Mar 31 2020 17:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99877 * 2 1 4 4 O 1.20822 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47280 * 59.99996 * 5 3 2 7 7 N 1.46904 * 109.47220 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99702 * 275.00063 * 7 5 3 9 9 C 1.50700 * 109.47080 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99891 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00070 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00115 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99935 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46819 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47085 * 119.99536 * 13 11 9 16 16 H 1.48501 * 109.47049 * 239.99500 * 13 11 9 17 17 C 1.50708 * 109.47325 * 299.99841 * 5 3 2 18 18 C 1.38163 * 120.02715 * 265.02667 * 17 5 3 19 19 C 1.38243 * 120.05438 * 179.97438 * 18 17 5 20 20 C 1.38289 * 120.11362 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05159 * 0.02562 * 20 19 18 22 22 C 1.38708 * 120.02785 * 85.00178 * 17 5 3 23 23 O 1.35899 * 120.05461 * 359.97438 * 22 17 5 24 24 C 1.42903 * 116.99930 * 180.02562 * 23 22 17 25 25 F 1.39899 * 109.46826 * 60.00682 * 24 23 22 26 26 F 1.39901 * 109.47086 * 180.02562 * 24 23 22 27 27 F 1.39895 * 109.47392 * 300.00490 * 24 23 22 28 28 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46673 * 299.99908 * 1 2 3 30 30 H 1.08993 * 109.47468 * 59.99882 * 1 2 3 31 31 H 1.00902 * 110.99744 * 38.95227 * 7 5 3 32 32 H 1.08997 * 109.47448 * 299.99787 * 8 7 5 33 33 H 1.09000 * 109.47417 * 60.00097 * 8 7 5 34 34 H 0.96998 * 119.99798 * 180.02562 * 12 11 9 35 35 H 1.08001 * 119.97059 * 359.94984 * 18 17 5 36 36 H 1.08004 * 119.94070 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.28495 * 20 19 18 38 38 H 1.08000 * 120.02328 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9556 0.7809 -0.8908 7 7 3.9829 2.6835 -0.0011 8 6 4.0170 3.2219 -1.3675 9 6 4.4470 4.6657 -1.3279 10 1 4.6720 5.1364 -0.3823 11 6 4.5521 5.3860 -2.4989 12 7 4.2777 4.8129 -3.6504 13 14 5.0844 7.1759 -2.4498 14 1 5.3319 7.5802 -1.0425 15 1 6.3306 7.3436 -3.2399 16 1 4.0135 8.0268 -3.0279 17 6 4.1056 0.5914 1.2296 18 6 4.3961 1.3308 2.3600 19 6 4.8903 0.7044 3.4889 20 6 5.0949 -0.6633 3.4901 21 6 4.8061 -1.4069 2.3625 22 6 4.3104 -0.7805 1.2280 23 8 4.0245 -1.5101 0.1177 24 6 4.2597 -2.9179 0.1882 25 9 3.4815 -3.4699 1.2113 26 9 3.9150 -3.5098 -1.0317 27 9 5.6131 -3.1519 0.4536 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.3831 3.2381 0.5912 32 1 4.7241 2.6481 -1.9665 33 1 3.0238 3.1510 -1.8109 34 1 4.3521 5.3196 -4.4741 35 1 4.2372 2.3990 2.3615 36 1 5.1163 1.2841 4.3717 37 1 5.4767 -1.1508 4.3749 38 1 4.9664 -2.4749 2.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932221820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:39 Heat of formation + Delta-G solvation = -243.923401 kcal Electronic energy + Delta-G solvation = -29723.865622 eV Core-core repulsion = 24924.163469 eV Total energy + Delta-G solvation = -4799.702154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 5.36 seconds Orbital eigenvalues (eV) -50.52434 -48.23197 -48.12348 -40.78811 -39.87708 -37.77676 -36.58053 -35.14459 -32.88531 -31.08854 -30.41968 -28.28800 -27.05702 -26.05107 -25.00500 -22.82750 -22.40770 -21.70817 -20.29734 -19.67470 -19.23770 -18.97409 -17.56864 -17.17816 -16.74582 -16.29053 -16.09679 -15.75710 -15.28437 -15.22657 -14.86550 -14.66403 -14.56761 -14.49889 -14.45705 -14.23331 -14.10860 -13.88393 -13.46122 -13.30538 -13.10393 -12.90733 -12.36530 -12.19874 -12.15143 -11.82760 -11.64991 -11.18385 -11.17680 -10.82561 -10.66412 -10.57435 -10.41654 -10.02110 -9.26756 -8.93111 -8.58247 -8.50103 -7.71510 -6.05190 -4.07141 1.14799 1.20835 1.45201 2.47736 2.74526 2.98273 3.31513 3.38434 3.43167 3.58943 3.70560 3.93844 4.37105 4.48349 4.63284 4.87881 4.95034 5.02874 5.16614 5.22200 5.29213 5.31633 5.40725 5.42450 5.59210 5.63328 5.84925 6.04447 6.18638 6.42081 6.51719 6.58171 6.86846 7.01975 7.34624 7.65202 7.97829 8.04856 8.11393 8.42694 8.99380 9.57041 11.06318 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.003691 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.708626 B = 7583.261675 C = 7854.055200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.437 3.563 4 O -0.495 6.495 5 C 0.138 3.862 6 H 0.124 0.876 7 N -0.651 5.651 8 C 0.189 3.811 9 C -0.512 4.512 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.901 3.099 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.072 4.072 18 C -0.051 4.051 19 C -0.140 4.140 20 C -0.081 4.081 21 C -0.197 4.197 22 C 0.120 3.880 23 O -0.297 6.297 24 C 0.603 3.397 25 F -0.167 7.167 26 F -0.132 7.132 27 F -0.168 7.168 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.344 0.656 32 H 0.032 0.968 33 H -0.002 1.002 34 H 0.262 0.738 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -17.383 12.871 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.277 3.723 4 O -0.381 6.381 5 C 0.024 3.976 6 H 0.141 0.859 7 N -0.282 5.282 8 C 0.063 3.937 9 C -0.551 4.551 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.729 3.271 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.073 4.073 18 C -0.069 4.069 19 C -0.159 4.159 20 C -0.099 4.099 21 C -0.215 4.215 22 C 0.077 3.923 23 O -0.217 6.217 24 C 0.512 3.488 25 F -0.150 7.150 26 F -0.114 7.114 27 F -0.150 7.150 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.050 0.950 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.408 -17.143 12.492 21.258 hybrid contribution -0.845 0.667 -0.443 1.164 sum -2.253 -16.476 12.049 20.536 Atomic orbital electron populations 1.23198 0.77518 1.03071 1.02330 1.86605 1.22557 1.33911 1.84009 1.25317 0.93371 0.81502 0.72080 1.90688 1.66525 1.36263 1.44649 1.20253 0.84417 0.95249 0.97655 0.85890 1.61208 1.52719 0.97781 1.16509 1.19745 0.96158 0.95596 0.82203 1.21089 1.45547 0.95070 0.93375 0.91716 1.24970 0.95444 0.98748 0.95313 1.69969 1.49078 1.36780 0.97729 0.86391 0.78113 0.84436 0.78160 1.19595 1.20983 1.21091 1.18890 1.03446 0.88721 0.96285 1.21034 0.94687 1.00832 0.90373 1.21212 1.01256 0.94583 0.98808 1.20920 0.97825 0.94003 0.97159 1.21387 1.05753 1.00663 0.93706 1.18441 0.99124 0.90245 0.84449 1.86503 1.81828 1.15425 1.37922 1.19377 0.74555 0.80294 0.74555 1.93282 1.75432 1.86169 1.60071 1.93305 1.92200 1.82139 1.43731 1.93292 1.33625 1.94449 1.93598 0.88623 0.92288 0.92024 0.83557 0.94993 0.98387 0.92886 0.83618 0.85162 0.85259 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.74 10.17 -39.45 -0.40 -6.14 16 3 C 0.44 8.14 7.07 36.00 0.25 8.39 16 4 O -0.50 -10.54 15.06 -18.75 -0.28 -10.82 16 5 C 0.14 2.52 2.43 -70.01 -0.17 2.35 16 6 H 0.12 2.32 7.35 -51.93 -0.38 1.94 16 7 N -0.65 -13.67 5.10 -110.45 -0.56 -14.24 16 8 C 0.19 4.93 5.13 -4.98 -0.03 4.90 16 9 C -0.51 -14.41 9.32 -34.44 -0.32 -14.73 16 10 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.07 -1.11 4.99 -104.47 -0.52 -1.63 16 18 C -0.05 -0.70 9.32 -39.61 -0.37 -1.07 16 19 C -0.14 -1.54 10.04 -39.56 -0.40 -1.94 16 20 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 21 C -0.20 -2.32 8.26 -39.43 -0.33 -2.65 16 22 C 0.12 1.70 6.40 -39.22 -0.25 1.45 16 23 O -0.30 -4.21 9.25 -19.42 -0.18 -4.39 16 24 C 0.60 7.09 3.42 101.05 0.35 7.44 16 25 F -0.17 -1.83 15.56 2.25 0.04 -1.79 16 26 F -0.13 -1.54 17.53 2.25 0.04 -1.50 16 27 F -0.17 -1.88 15.56 2.25 0.04 -1.85 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.34 7.17 7.17 -39.29 -0.28 6.89 16 32 H 0.03 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.00 -0.05 7.62 -51.93 -0.40 -0.45 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.15 2.01 6.89 -52.49 -0.36 1.64 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.36 5.10 -52.49 -0.27 1.09 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -31.70 343.66 -5.40 -37.10 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.76 Total: 3.58 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.21 Total: 4.29 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.17 Total: -40.35 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.86 Total: -21.34 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.70 -5.40 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932221820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.824 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.36 seconds