Wall clock time and date at job start Tue Mar 31 2020 17:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99877 * 2 1 4 4 O 1.20822 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47280 * 59.99996 * 5 3 2 7 7 N 1.46904 * 109.47220 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99702 * 275.00063 * 7 5 3 9 9 C 1.50700 * 109.47080 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99891 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00070 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00115 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99935 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46819 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47085 * 119.99536 * 13 11 9 16 16 H 1.48501 * 109.47049 * 239.99500 * 13 11 9 17 17 C 1.50708 * 109.47325 * 299.99841 * 5 3 2 18 18 C 1.38163 * 120.02715 * 265.02667 * 17 5 3 19 19 C 1.38243 * 120.05438 * 179.97438 * 18 17 5 20 20 C 1.38289 * 120.11362 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05159 * 0.02562 * 20 19 18 22 22 C 1.38708 * 120.02785 * 85.00178 * 17 5 3 23 23 O 1.35899 * 120.05461 * 359.97438 * 22 17 5 24 24 C 1.42903 * 116.99930 * 180.02562 * 23 22 17 25 25 F 1.39899 * 109.46826 * 60.00682 * 24 23 22 26 26 F 1.39901 * 109.47086 * 180.02562 * 24 23 22 27 27 F 1.39895 * 109.47392 * 300.00490 * 24 23 22 28 28 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46673 * 299.99908 * 1 2 3 30 30 H 1.08993 * 109.47468 * 59.99882 * 1 2 3 31 31 H 1.00902 * 110.99744 * 38.95227 * 7 5 3 32 32 H 1.08997 * 109.47448 * 299.99787 * 8 7 5 33 33 H 1.09000 * 109.47417 * 60.00097 * 8 7 5 34 34 H 0.96998 * 119.99798 * 180.02562 * 12 11 9 35 35 H 1.08001 * 119.97059 * 359.94984 * 18 17 5 36 36 H 1.08004 * 119.94070 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.96940 * 180.28495 * 20 19 18 38 38 H 1.08000 * 120.02328 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9556 0.7809 -0.8908 7 7 3.9829 2.6835 -0.0011 8 6 4.0170 3.2219 -1.3675 9 6 4.4470 4.6657 -1.3279 10 1 4.6720 5.1364 -0.3823 11 6 4.5521 5.3860 -2.4989 12 7 4.2777 4.8129 -3.6504 13 14 5.0844 7.1759 -2.4498 14 1 5.3319 7.5802 -1.0425 15 1 6.3306 7.3436 -3.2399 16 1 4.0135 8.0268 -3.0279 17 6 4.1056 0.5914 1.2296 18 6 4.3961 1.3308 2.3600 19 6 4.8903 0.7044 3.4889 20 6 5.0949 -0.6633 3.4901 21 6 4.8061 -1.4069 2.3625 22 6 4.3104 -0.7805 1.2280 23 8 4.0245 -1.5101 0.1177 24 6 4.2597 -2.9179 0.1882 25 9 3.4815 -3.4699 1.2113 26 9 3.9150 -3.5098 -1.0317 27 9 5.6131 -3.1519 0.4536 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.3831 3.2381 0.5912 32 1 4.7241 2.6481 -1.9665 33 1 3.0238 3.1510 -1.8109 34 1 4.3521 5.3196 -4.4741 35 1 4.2372 2.3990 2.3615 36 1 5.1163 1.2841 4.3717 37 1 5.4767 -1.1508 4.3749 38 1 4.9664 -2.4749 2.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932221820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:36 Heat of formation + Delta-G solvation = -264.165939 kcal Electronic energy + Delta-G solvation = -29724.743405 eV Core-core repulsion = 24924.163469 eV Total energy + Delta-G solvation = -4800.579936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.44373 -49.15829 -49.02579 -42.06669 -41.07971 -38.84446 -37.98627 -36.76485 -34.84498 -32.59151 -31.38150 -29.60448 -28.64608 -27.00920 -26.60076 -24.18846 -23.55602 -23.30374 -21.69324 -20.65387 -20.16482 -19.95425 -19.09742 -18.74886 -18.00002 -17.88791 -17.38108 -16.92053 -16.70928 -16.24907 -16.16240 -15.81798 -15.57766 -15.49988 -15.43970 -15.31393 -15.14274 -15.03706 -14.89837 -14.64275 -14.42008 -14.15569 -14.10132 -13.77084 -13.35675 -13.20015 -12.94152 -12.75080 -12.69656 -12.39121 -12.15366 -12.06000 -11.88833 -11.87415 -11.34212 -10.71222 -9.94787 -9.60866 -9.48495 -8.24258 -6.35206 0.14829 0.24909 0.49679 0.99649 1.41735 1.42572 1.56495 1.67692 1.79659 2.39169 2.62038 2.76863 3.00127 3.10335 3.16404 3.47339 3.73765 3.82250 3.92960 3.98299 4.23052 4.23393 4.25336 4.43776 4.52510 4.59436 4.86621 4.92440 5.09205 5.14192 5.22768 5.29524 5.45857 5.51123 5.57577 5.90314 5.94101 6.16181 6.39468 6.60672 6.80637 7.34676 8.88368 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.003691 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.708626 B = 7583.261675 C = 7854.055200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.442 3.558 4 O -0.530 6.530 5 C 0.140 3.860 6 H 0.108 0.892 7 N -0.641 5.641 8 C 0.207 3.793 9 C -0.532 4.532 10 H 0.070 0.930 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.977 3.023 14 H -0.259 1.259 15 H -0.276 1.276 16 H -0.281 1.281 17 C -0.097 4.097 18 C -0.065 4.065 19 C -0.132 4.132 20 C -0.066 4.066 21 C -0.197 4.197 22 C 0.108 3.892 23 O -0.318 6.318 24 C 0.608 3.392 25 F -0.160 7.160 26 F -0.133 7.133 27 F -0.163 7.163 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.345 0.655 32 H 0.008 0.992 33 H -0.038 1.038 34 H 0.265 0.735 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -18.046 15.357 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.284 3.716 4 O -0.419 6.419 5 C 0.027 3.973 6 H 0.126 0.874 7 N -0.272 5.272 8 C 0.080 3.920 9 C -0.570 4.570 10 H 0.088 0.912 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.801 3.199 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.207 1.207 17 C -0.098 4.098 18 C -0.084 4.084 19 C -0.150 4.150 20 C -0.084 4.084 21 C -0.215 4.215 22 C 0.066 3.934 23 O -0.238 6.238 24 C 0.518 3.482 25 F -0.142 7.142 26 F -0.114 7.114 27 F -0.145 7.145 28 H 0.153 0.847 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.165 0.835 32 H 0.026 0.974 33 H -0.020 1.020 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.670 -17.850 15.004 23.328 hybrid contribution -1.129 0.712 -1.161 1.769 sum -1.799 -17.138 13.843 22.104 Atomic orbital electron populations 1.23557 0.75287 1.05670 1.02274 1.86577 1.24676 1.32268 1.83264 1.25254 0.93508 0.81685 0.71171 1.90663 1.67270 1.37422 1.46553 1.20144 0.84666 0.93390 0.99134 0.87423 1.61048 1.53360 0.99280 1.13464 1.19325 0.93221 0.95155 0.84341 1.21469 1.45635 0.96049 0.93823 0.91168 1.25974 0.95210 1.03794 0.94770 1.70105 1.50021 1.38850 0.98548 0.85227 0.77749 0.78173 0.78793 1.18253 1.20184 1.20654 1.18696 1.05981 0.89585 0.95565 1.21115 0.95594 1.00594 0.91048 1.21553 0.99560 0.95270 0.98578 1.21415 0.95637 0.93631 0.97729 1.21666 1.05013 1.01600 0.93257 1.18553 0.99836 0.89812 0.85240 1.86464 1.82125 1.16623 1.38556 1.19245 0.74756 0.79539 0.74702 1.93293 1.75273 1.85922 1.59678 1.93304 1.92231 1.82010 1.43900 1.93298 1.33306 1.94337 1.93559 0.84661 0.91705 0.92813 0.83462 0.97382 1.02047 0.92598 0.84469 0.81995 0.81216 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.35 -11.55 10.17 -51.21 -0.52 -12.07 16 3 C 0.44 17.18 7.07 71.23 0.50 17.68 16 4 O -0.53 -23.65 15.06 21.97 0.33 -23.32 16 5 C 0.14 5.38 2.43 43.42 0.11 5.49 16 6 H 0.11 4.40 7.35 -2.39 -0.02 4.39 16 7 N -0.64 -28.30 5.10 -503.37 -2.57 -30.86 16 8 C 0.21 11.42 5.13 85.56 0.44 11.86 16 9 C -0.53 -30.75 9.32 25.60 0.24 -30.51 16 10 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 13 Si 0.98 44.84 29.54 68.60 2.03 46.87 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 C -0.10 -3.02 4.99 -19.77 -0.10 -3.12 16 18 C -0.07 -1.74 9.32 22.25 0.21 -1.54 16 19 C -0.13 -2.48 10.04 22.28 0.22 -2.26 16 20 C -0.07 -1.10 10.04 22.25 0.22 -0.88 16 21 C -0.20 -4.13 8.26 22.36 0.18 -3.95 16 22 C 0.11 2.98 6.40 22.50 0.14 3.13 16 23 O -0.32 -8.97 9.25 -92.41 -0.85 -9.83 16 24 C 0.61 13.69 3.42 113.37 0.39 14.08 16 25 F -0.16 -3.19 15.56 44.97 0.70 -2.49 16 26 F -0.13 -3.01 17.53 44.97 0.79 -2.23 16 27 F -0.16 -3.43 15.56 44.97 0.70 -2.73 16 28 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 30 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.35 15.10 7.17 -89.69 -0.64 14.46 16 32 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 33 H -0.04 -2.35 7.62 -2.39 -0.02 -2.37 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.14 3.80 6.89 -2.91 -0.02 3.78 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.15 2.58 5.10 -2.91 -0.01 2.56 16 Total: -1.00 -71.11 343.66 5.60 -65.51 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.49 Total: 16.18 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 4.22 Total: 12.31 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.28 Total: -88.21 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.04 Total: -45.21 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 2.19 Total: -7.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.11 5.60 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932221820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.657 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds