Wall clock time and date at job start Tue Mar 31 2020 16:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00258 * 2 1 4 4 O 1.20822 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00019 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47098 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47050 * 179.97438 * 6 5 3 8 8 C 1.37096 * 119.99894 * 265.08360 * 7 6 5 9 9 H 1.08000 * 119.99763 * 137.95305 * 8 7 6 10 10 C 1.38952 * 120.00136 * 317.94703 * 8 7 6 11 11 N 1.31404 * 119.99766 * 158.43794 * 10 8 7 12 12 Si 1.86794 * 119.99977 * 338.43297 * 10 8 7 13 13 H 1.48508 * 109.47100 * 91.34246 * 12 10 8 14 14 H 1.48497 * 109.47493 * 211.34490 * 12 10 8 15 15 H 1.48506 * 109.47331 * 331.34689 * 12 10 8 16 16 C 1.34781 * 119.99892 * 85.08942 * 7 6 5 17 17 O 1.21290 * 119.99777 * 5.40402 * 16 7 6 18 18 C 1.50695 * 120.00020 * 185.40970 * 16 7 6 19 19 C 1.52776 * 109.20726 * 277.33414 * 18 16 7 20 20 C 1.53035 * 109.88417 * 169.76870 * 19 18 16 21 21 S 1.81673 * 109.07753 * 63.58922 * 20 19 18 22 22 O 1.42109 * 108.66164 * 59.98287 * 21 20 19 23 23 O 1.42095 * 108.66645 * 191.22426 * 21 20 19 24 24 C 1.81669 * 101.30786 * 305.65384 * 21 20 19 25 25 C 1.52586 * 109.24536 * 156.12712 * 18 16 7 26 26 H 1.09005 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47025 * 300.00270 * 1 2 3 28 28 H 1.08999 * 109.46920 * 60.00587 * 1 2 3 29 29 H 1.08994 * 109.47660 * 59.99459 * 5 3 2 30 30 H 1.09003 * 109.46992 * 299.99091 * 5 3 2 31 31 H 1.09003 * 109.47233 * 59.99534 * 6 5 3 32 32 H 1.08996 * 109.46723 * 299.99700 * 6 5 3 33 33 H 0.97000 * 120.00126 * 180.02562 * 11 10 8 34 34 H 1.09007 * 109.24086 * 36.69050 * 18 16 7 35 35 H 1.09002 * 109.52089 * 49.59053 * 19 18 16 36 36 H 1.08998 * 109.35004 * 289.84015 * 19 18 16 37 37 H 1.09000 * 109.55483 * 303.69135 * 20 19 18 38 38 H 1.08997 * 109.55269 * 183.49309 * 20 19 18 39 39 H 1.09001 * 109.54606 * 174.15089 * 24 21 20 40 40 H 1.08997 * 109.54879 * 294.34297 * 24 21 20 41 41 H 1.09002 * 109.38520 * 70.12776 * 25 18 16 42 42 H 1.08998 * 109.30160 * 310.39496 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1424 2.9565 1.1819 9 1 7.0448 2.3892 1.3557 10 6 5.6698 3.8262 2.1570 11 7 6.0329 3.6683 3.4100 12 14 4.5185 5.2200 1.6868 13 1 3.1111 4.7615 1.8069 14 1 4.7422 6.3743 2.5939 15 1 4.7868 5.6324 0.2856 16 6 6.1415 2.7536 -1.1640 17 8 5.5394 2.7306 -2.2166 18 6 7.6478 2.7095 -1.1563 19 6 8.1916 4.1311 -1.0249 20 6 9.6983 4.0897 -0.7603 21 16 10.5327 3.3482 -2.1937 22 8 10.2603 4.1429 -3.3398 23 8 11.8820 3.0737 -1.8426 24 6 9.6387 1.7746 -2.3516 25 6 8.1386 2.0614 -2.4475 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.9558 0.7807 -0.8907 30 1 3.9564 0.7805 0.8893 31 1 3.6108 3.2364 0.8889 32 1 3.6102 3.2358 -0.8911 33 1 5.7027 4.2752 4.0908 34 1 7.9854 2.1168 -0.3060 35 1 7.6929 4.6369 -0.1981 36 1 8.0014 4.6773 -1.9488 37 1 9.8964 3.4894 0.1277 38 1 10.0696 5.1028 -0.6061 39 1 9.9692 1.2561 -3.2516 40 1 9.8376 1.1529 -1.4786 41 1 7.9517 2.7348 -3.2840 42 1 7.6011 1.1269 -2.6085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132452547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:39 Heat of formation + Delta-G solvation = -189.330500 kcal Electronic energy + Delta-G solvation = -27877.632040 eV Core-core repulsion = 23757.597904 eV Total energy + Delta-G solvation = -4120.034136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -40.32101 -39.52496 -37.06241 -36.54120 -36.03251 -35.90891 -35.13181 -32.45166 -31.73725 -31.07310 -28.27310 -27.44128 -25.05885 -24.19525 -23.38802 -21.29617 -20.44506 -19.20174 -18.72693 -17.68431 -17.16349 -16.70445 -16.47373 -16.44644 -16.20371 -16.14847 -15.55099 -15.15249 -14.52613 -14.43664 -14.04231 -13.78975 -13.51499 -13.28839 -13.04090 -12.84525 -12.74952 -12.69810 -12.26183 -12.21738 -12.02635 -11.91650 -11.86496 -11.74069 -11.61222 -11.30329 -11.10390 -10.97611 -10.73820 -10.71671 -10.48630 -10.31112 -10.20904 -10.08163 -9.82079 -9.39232 -8.78002 -8.01539 -6.67441 -4.34584 0.13899 2.43004 2.75389 2.81955 2.99108 3.15153 3.22751 3.44054 3.72823 3.91204 4.00536 4.23023 4.65855 4.69723 4.73732 4.84422 4.99614 5.10857 5.12144 5.17357 5.20791 5.29962 5.43512 5.44645 5.50431 5.57710 5.67478 5.78116 5.92907 6.01274 6.02516 6.13076 6.25981 6.42094 6.43749 6.51801 6.56160 7.14845 7.85426 7.93505 8.00584 8.73227 9.09263 9.42086 10.41525 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.003876 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.436593 B = 7222.149002 C = 8393.014330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.510 6.510 5 C -0.122 4.122 6 C 0.112 3.888 7 N -0.462 5.462 8 C -0.359 4.359 9 H 0.108 0.892 10 C 0.077 3.923 11 N -0.851 5.851 12 Si 0.860 3.140 13 H -0.267 1.267 14 H -0.285 1.285 15 H -0.258 1.258 16 C 0.494 3.506 17 O -0.586 6.586 18 C -0.109 4.109 19 C -0.097 4.097 20 C -0.590 4.590 21 S 2.409 3.591 22 O -0.941 6.941 23 O -0.954 6.954 24 C -0.599 4.599 25 C -0.092 4.092 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.278 0.722 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -5.528 -4.667 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.012 4.012 7 N -0.182 5.182 8 C -0.485 4.485 9 H 0.125 0.875 10 C -0.132 4.132 11 N -0.484 5.484 12 Si 0.686 3.314 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.182 1.182 16 C 0.283 3.717 17 O -0.470 6.470 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.721 4.721 21 S 2.592 3.408 22 O -0.938 6.938 23 O -0.951 6.951 24 C -0.728 4.728 25 C -0.131 4.131 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.457 -4.838 -5.473 7.319 hybrid contribution -1.420 0.384 0.778 1.664 sum -0.963 -4.454 -4.695 6.543 Atomic orbital electron populations 1.23208 0.77007 1.03277 1.02424 1.86532 1.23000 1.33993 1.84418 1.23989 0.92309 0.81045 0.71660 1.90653 1.67369 1.36336 1.45402 1.21795 0.86239 1.01793 1.06258 1.21466 0.83144 0.93186 1.03363 1.43669 1.03675 1.64581 1.06299 1.18997 1.12082 1.26180 0.91280 0.87499 1.25323 0.96498 0.96842 0.94585 1.69744 1.42949 1.35837 0.99913 0.87175 0.81493 0.82665 0.80067 1.19266 1.21093 1.18163 1.20159 0.88849 0.79263 0.83459 1.90586 1.70471 1.54676 1.31285 1.21226 0.94878 0.97786 0.99111 1.21168 0.90321 0.96770 1.05333 1.30140 1.08468 1.13785 1.19669 1.08216 0.76087 0.78649 0.77831 1.93573 1.86048 1.67108 1.47103 1.93566 1.31798 1.85034 1.84666 1.30188 1.09391 1.21724 1.11518 1.21127 0.89855 1.03605 0.98525 0.88392 0.92043 0.92086 0.87610 0.86762 0.89975 0.90437 0.91208 0.87557 0.87386 0.90050 0.84404 0.84857 0.85045 0.84858 0.89223 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.35 10.56 -39.24 -0.41 -5.77 16 3 C 0.47 8.08 7.96 36.00 0.29 8.37 16 4 O -0.51 -10.14 15.73 -18.75 -0.29 -10.44 16 5 C -0.12 -2.12 6.10 -27.88 -0.17 -2.29 16 6 C 0.11 2.31 3.33 -4.04 -0.01 2.30 16 7 N -0.46 -9.66 2.09 -114.81 -0.24 -9.90 16 8 C -0.36 -7.98 8.11 -14.93 -0.12 -8.10 16 9 H 0.11 2.40 6.78 -52.49 -0.36 2.04 16 10 C 0.08 1.82 5.25 -17.47 -0.09 1.73 16 11 N -0.85 -21.28 13.96 55.50 0.77 -20.51 16 12 Si 0.86 19.26 25.38 -169.99 -4.31 14.95 16 13 H -0.27 -6.07 6.56 56.52 0.37 -5.70 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 16 C 0.49 9.78 6.65 -10.99 -0.07 9.71 16 17 O -0.59 -12.82 15.86 5.55 0.09 -12.73 16 18 C -0.11 -1.71 1.59 -92.10 -0.15 -1.85 16 19 C -0.10 -1.45 4.94 -26.83 -0.13 -1.59 16 20 C -0.59 -6.95 6.34 37.18 0.24 -6.72 16 21 S 2.41 29.54 5.31 -107.50 -0.57 28.97 16 22 O -0.94 -14.64 17.95 -57.82 -1.04 -15.68 16 23 O -0.95 -14.23 18.11 -57.82 -1.05 -15.28 16 24 C -0.60 -6.21 6.35 37.17 0.24 -5.97 16 25 C -0.09 -1.24 4.40 -26.93 -0.12 -1.36 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 31 H 0.08 1.82 3.95 -51.93 -0.20 1.61 16 32 H 0.08 1.67 7.46 -51.93 -0.39 1.28 16 33 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.11 1.55 6.60 -51.93 -0.34 1.20 16 35 H 0.11 1.82 7.25 -51.93 -0.38 1.44 16 36 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 37 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 42 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -32.68 355.00 -6.64 -39.31 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.89 Total: 6.05 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 0.96 Total: -4.32 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.53 Total: -30.41 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -2.71 Total: -59.90 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.31 Total: 14.95 kcal Atomic # 16 Polarization: 29.54 SS G_CDS: -0.57 Total: 28.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.68 -6.64 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132452547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.016 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds