Wall clock time and date at job start Tue Mar 31 2020 16:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00258 * 2 1 4 4 O 1.20822 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00019 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47098 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47050 * 179.97438 * 6 5 3 8 8 C 1.37096 * 119.99894 * 265.08360 * 7 6 5 9 9 H 1.08000 * 119.99763 * 137.95305 * 8 7 6 10 10 C 1.38952 * 120.00136 * 317.94703 * 8 7 6 11 11 N 1.31404 * 119.99766 * 158.43794 * 10 8 7 12 12 Si 1.86794 * 119.99977 * 338.43297 * 10 8 7 13 13 H 1.48508 * 109.47100 * 91.34246 * 12 10 8 14 14 H 1.48497 * 109.47493 * 211.34490 * 12 10 8 15 15 H 1.48506 * 109.47331 * 331.34689 * 12 10 8 16 16 C 1.34781 * 119.99892 * 85.08942 * 7 6 5 17 17 O 1.21290 * 119.99777 * 5.40402 * 16 7 6 18 18 C 1.50695 * 120.00020 * 185.40970 * 16 7 6 19 19 C 1.52776 * 109.20726 * 277.33414 * 18 16 7 20 20 C 1.53035 * 109.88417 * 169.76870 * 19 18 16 21 21 S 1.81673 * 109.07753 * 63.58922 * 20 19 18 22 22 O 1.42109 * 108.66164 * 59.98287 * 21 20 19 23 23 O 1.42095 * 108.66645 * 191.22426 * 21 20 19 24 24 C 1.81669 * 101.30786 * 305.65384 * 21 20 19 25 25 C 1.52586 * 109.24536 * 156.12712 * 18 16 7 26 26 H 1.09005 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47025 * 300.00270 * 1 2 3 28 28 H 1.08999 * 109.46920 * 60.00587 * 1 2 3 29 29 H 1.08994 * 109.47660 * 59.99459 * 5 3 2 30 30 H 1.09003 * 109.46992 * 299.99091 * 5 3 2 31 31 H 1.09003 * 109.47233 * 59.99534 * 6 5 3 32 32 H 1.08996 * 109.46723 * 299.99700 * 6 5 3 33 33 H 0.97000 * 120.00126 * 180.02562 * 11 10 8 34 34 H 1.09007 * 109.24086 * 36.69050 * 18 16 7 35 35 H 1.09002 * 109.52089 * 49.59053 * 19 18 16 36 36 H 1.08998 * 109.35004 * 289.84015 * 19 18 16 37 37 H 1.09000 * 109.55483 * 303.69135 * 20 19 18 38 38 H 1.08997 * 109.55269 * 183.49309 * 20 19 18 39 39 H 1.09001 * 109.54606 * 174.15089 * 24 21 20 40 40 H 1.08997 * 109.54879 * 294.34297 * 24 21 20 41 41 H 1.09002 * 109.38520 * 70.12776 * 25 18 16 42 42 H 1.08998 * 109.30160 * 310.39496 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1424 2.9565 1.1819 9 1 7.0448 2.3892 1.3557 10 6 5.6698 3.8262 2.1570 11 7 6.0329 3.6683 3.4100 12 14 4.5185 5.2200 1.6868 13 1 3.1111 4.7615 1.8069 14 1 4.7422 6.3743 2.5939 15 1 4.7868 5.6324 0.2856 16 6 6.1415 2.7536 -1.1640 17 8 5.5394 2.7306 -2.2166 18 6 7.6478 2.7095 -1.1563 19 6 8.1916 4.1311 -1.0249 20 6 9.6983 4.0897 -0.7603 21 16 10.5327 3.3482 -2.1937 22 8 10.2603 4.1429 -3.3398 23 8 11.8820 3.0737 -1.8426 24 6 9.6387 1.7746 -2.3516 25 6 8.1386 2.0614 -2.4475 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.9558 0.7807 -0.8907 30 1 3.9564 0.7805 0.8893 31 1 3.6108 3.2364 0.8889 32 1 3.6102 3.2358 -0.8911 33 1 5.7027 4.2752 4.0908 34 1 7.9854 2.1168 -0.3060 35 1 7.6929 4.6369 -0.1981 36 1 8.0014 4.6773 -1.9488 37 1 9.8964 3.4894 0.1277 38 1 10.0696 5.1028 -0.6061 39 1 9.9692 1.2561 -3.2516 40 1 9.8376 1.1529 -1.4786 41 1 7.9517 2.7348 -3.2840 42 1 7.6011 1.1269 -2.6085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132452547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:38 Heat of formation + Delta-G solvation = -212.719539 kcal Electronic energy + Delta-G solvation = -27878.646265 eV Core-core repulsion = 23757.597904 eV Total energy + Delta-G solvation = -4121.048361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.69162 -41.01840 -38.21925 -37.80430 -37.31090 -37.00583 -36.74277 -34.20081 -32.85302 -32.49987 -29.41896 -28.52098 -26.79322 -25.58683 -24.45284 -22.55803 -21.79682 -20.81950 -19.74328 -19.12053 -18.53544 -18.15581 -17.78728 -17.69058 -17.53974 -17.20111 -16.76736 -16.55244 -15.99352 -15.92525 -15.35777 -15.01213 -14.75536 -14.57426 -14.44667 -14.25069 -14.02517 -13.91039 -13.61100 -13.57537 -13.15921 -13.15090 -13.03521 -13.00439 -12.85829 -12.73889 -12.65300 -12.23335 -12.13348 -11.90963 -11.82393 -11.78869 -11.68371 -11.53267 -11.15198 -10.85499 -10.44288 -9.74614 -8.52688 -6.15948 -0.83006 1.06450 1.17697 1.31418 1.39151 1.56827 1.81537 1.85747 2.17064 2.55222 2.77886 2.88709 3.13543 3.63967 3.69873 3.71939 3.85422 3.87999 3.95091 4.08589 4.17889 4.26174 4.28466 4.29433 4.38712 4.43672 4.55913 4.66748 4.68977 4.78679 4.81268 4.87108 4.98216 5.05651 5.26525 5.27172 5.30814 5.43224 6.11748 6.22219 6.62270 6.96155 7.38590 7.73958 8.59414 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.003876 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.436593 B = 7222.149002 C = 8393.014330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.543 6.543 5 C -0.113 4.113 6 C 0.109 3.891 7 N -0.473 5.473 8 C -0.335 4.335 9 H 0.112 0.888 10 C 0.053 3.947 11 N -0.881 5.881 12 Si 0.889 3.111 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.491 3.509 17 O -0.607 6.607 18 C -0.109 4.109 19 C -0.100 4.100 20 C -0.585 4.585 21 S 2.423 3.577 22 O -0.979 6.979 23 O -0.979 6.979 24 C -0.581 4.581 25 C -0.092 4.092 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.278 0.722 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.078 0.922 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -7.493 -4.958 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.433 6.433 5 C -0.152 4.152 6 C -0.014 4.014 7 N -0.194 5.194 8 C -0.462 4.462 9 H 0.129 0.871 10 C -0.154 4.154 11 N -0.517 5.517 12 Si 0.716 3.284 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.193 1.193 16 C 0.281 3.719 17 O -0.492 6.492 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.716 4.716 21 S 2.610 3.390 22 O -0.976 6.976 23 O -0.976 6.976 24 C -0.712 4.712 25 C -0.131 4.131 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.096 0.904 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.162 -6.797 -5.775 8.994 hybrid contribution -1.747 0.931 0.782 2.128 sum -0.585 -5.866 -4.994 7.726 Atomic orbital electron populations 1.23595 0.74690 1.05942 1.02470 1.86507 1.25181 1.32219 1.83662 1.23886 0.92248 0.81326 0.70922 1.90644 1.68006 1.37546 1.47096 1.21631 0.86733 0.99500 1.07314 1.21357 0.83196 0.95246 1.01628 1.43797 1.03760 1.65349 1.06447 1.19019 1.11560 1.24651 0.90974 0.87114 1.25562 0.97234 0.97768 0.94799 1.69763 1.44698 1.36885 1.00360 0.86750 0.80435 0.82120 0.79081 1.20401 1.21005 1.19329 1.20902 0.90661 0.77715 0.82575 1.90573 1.71518 1.55233 1.31905 1.21348 0.91666 0.98738 1.01264 1.21121 0.92412 0.96095 1.04305 1.30098 1.05723 1.15430 1.20312 1.07645 0.75514 0.78949 0.76914 1.93526 1.86469 1.68813 1.48801 1.93535 1.33623 1.85540 1.84881 1.30056 1.06294 1.20362 1.14489 1.21088 0.91929 1.03375 0.96683 0.84420 0.92161 0.91991 0.86340 0.85736 0.91762 0.92085 0.91172 0.85837 0.89536 0.90535 0.82320 0.83418 0.82400 0.81759 0.90362 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.00 10.56 -51.37 -0.54 -10.54 16 3 C 0.47 16.01 7.96 71.23 0.57 16.58 16 4 O -0.54 -21.70 15.73 21.98 0.35 -21.35 16 5 C -0.11 -3.83 6.10 29.85 0.18 -3.65 16 6 C 0.11 4.54 3.33 86.38 0.29 4.83 16 7 N -0.47 -19.50 2.09 -635.53 -1.33 -20.83 16 8 C -0.33 -14.59 8.11 84.04 0.68 -13.91 16 9 H 0.11 4.75 6.78 -2.91 -0.02 4.73 16 10 C 0.05 2.48 5.25 84.93 0.45 2.93 16 11 N -0.88 -43.84 13.96 21.66 0.30 -43.54 16 12 Si 0.89 40.15 25.38 68.60 1.74 41.89 16 13 H -0.28 -12.90 6.56 99.48 0.65 -12.25 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 C 0.49 18.99 6.65 87.65 0.58 19.57 16 17 O -0.61 -26.25 15.86 -3.06 -0.05 -26.30 16 18 C -0.11 -3.21 1.59 -11.75 -0.02 -3.23 16 19 C -0.10 -2.89 4.94 30.53 0.15 -2.74 16 20 C -0.59 -12.51 6.34 71.99 0.46 -12.06 16 21 S 2.42 54.15 5.31 -56.49 -0.30 53.85 16 22 O -0.98 -29.44 17.95 -127.38 -2.29 -31.72 16 23 O -0.98 -27.06 18.11 -127.38 -2.31 -29.37 16 24 C -0.58 -9.84 6.35 71.99 0.46 -9.38 16 25 C -0.09 -2.22 4.40 30.47 0.13 -2.09 16 26 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.06 2.89 3.95 -2.39 -0.01 2.88 16 32 H 0.06 2.69 7.46 -2.39 -0.02 2.68 16 33 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 34 H 0.12 3.20 6.60 -2.38 -0.02 3.19 16 35 H 0.09 2.88 7.25 -2.39 -0.02 2.86 16 36 H 0.08 2.24 8.02 -2.39 -0.02 2.22 16 37 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 42 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 Total: -1.00 -70.56 355.00 1.68 -68.88 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.98 Total: 20.45 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.12 Total: -1.42 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.03 Total: -64.37 kcal Atomic # 8 Polarization: -114.44 SS G_CDS: -4.84 Total: -119.28 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.74 Total: 41.89 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.30 Total: 53.85 kcal Total: -70.56 1.68 -68.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132452547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.844 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds