Wall clock time and date at job start Tue Mar 31 2020 16:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34222 * 117.00240 * 2 1 4 4 O 1.20826 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46821 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46764 * 179.97438 * 6 5 3 8 8 C 1.37102 * 119.99850 * 269.99882 * 7 6 5 9 9 H 1.08001 * 120.00048 * 5.13377 * 8 7 6 10 10 C 1.38946 * 119.99510 * 185.12793 * 8 7 6 11 11 N 1.31414 * 120.00338 * 11.76035 * 10 8 7 12 12 Si 1.86805 * 119.99800 * 191.75236 * 10 8 7 13 13 H 1.48504 * 109.46751 * 94.99940 * 12 10 8 14 14 H 1.48503 * 109.47122 * 214.99774 * 12 10 8 15 15 H 1.48494 * 109.46954 * 335.00080 * 12 10 8 16 16 C 1.34770 * 119.99593 * 90.00177 * 7 6 5 17 17 O 1.21290 * 119.99757 * 241.77668 * 16 7 6 18 18 C 1.50697 * 120.00410 * 61.78209 * 16 7 6 19 19 S 1.81400 * 112.90808 * 253.32163 * 18 16 7 20 20 C 1.81399 * 101.91877 * 315.13124 * 19 18 16 21 21 O 1.42096 * 108.57966 * 69.61803 * 19 18 16 22 22 O 1.42099 * 108.58067 * 200.64612 * 19 18 16 23 23 C 1.53783 * 113.61288 * 24.56697 * 18 16 7 24 24 C 1.53786 * 87.08054 * 89.12040 * 23 18 16 25 25 C 1.53781 * 87.08030 * 25.43123 * 24 23 18 26 26 H 1.08997 * 109.47215 * 300.00649 * 1 2 3 27 27 H 1.09008 * 109.46863 * 60.00418 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47185 * 59.99437 * 5 3 2 30 30 H 1.08998 * 109.46728 * 299.99032 * 5 3 2 31 31 H 1.09007 * 109.47066 * 60.00024 * 6 5 3 32 32 H 1.08997 * 109.47380 * 299.99968 * 6 5 3 33 33 H 0.96996 * 120.00255 * 184.98757 * 11 10 8 34 34 H 1.08998 * 109.47450 * 65.45328 * 20 19 18 35 35 H 1.09006 * 109.47264 * 185.45159 * 20 19 18 36 36 H 1.09005 * 109.47179 * 305.45183 * 20 19 18 37 37 H 1.08995 * 113.61521 * 334.57426 * 23 18 16 38 38 H 1.09001 * 113.61909 * 203.66667 * 23 18 16 39 39 H 1.09005 * 113.61478 * 139.98097 * 24 23 18 40 40 H 1.08992 * 113.61106 * 270.88424 * 24 23 18 41 41 H 1.09009 * 113.61150 * 89.11381 * 25 24 23 42 42 H 1.08991 * 113.61548 * 219.93570 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4633 2.8186 -0.0011 8 6 6.1477 2.8549 1.1863 9 1 5.6160 2.7436 2.1198 10 6 7.5255 3.0347 1.1887 11 7 8.1426 3.3987 0.0870 12 14 8.5007 2.7593 2.7580 13 1 9.0375 1.3747 2.7705 14 1 9.6256 3.7269 2.8180 15 1 7.6142 2.9572 3.9327 16 6 6.1362 2.8534 -1.1682 17 8 6.9170 1.9674 -1.4447 18 6 5.9186 3.9932 -2.1297 19 16 4.9530 3.5122 -3.5881 20 6 5.7242 1.9351 -4.0446 21 8 3.6146 3.2610 -3.1822 22 8 5.1987 4.4530 -4.6243 23 6 5.4160 5.2806 -1.4554 24 6 6.8931 5.6598 -1.2570 25 6 7.2038 4.7664 -2.4695 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.9557 0.7807 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 3.6108 3.2363 0.8890 32 1 3.6101 3.2359 -0.8910 33 1 9.1108 3.4541 0.0690 34 1 5.5453 1.2020 -3.2581 35 1 5.2933 1.5772 -4.9798 36 1 6.7974 2.0784 -4.1704 37 1 4.8813 5.1045 -0.5220 38 1 4.8810 5.9476 -2.1315 39 1 7.0996 6.7163 -1.4287 40 1 7.3168 5.2911 -0.3229 41 1 7.1575 5.2928 -3.4229 42 1 8.1130 4.1763 -2.3554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132452819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:31 Heat of formation + Delta-G solvation = -127.642609 kcal Electronic energy + Delta-G solvation = -29422.279507 eV Core-core repulsion = 25304.920358 eV Total energy + Delta-G solvation = -4117.359149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.21277 -39.58527 -36.94768 -36.37542 -36.19938 -35.60509 -34.80831 -32.49320 -30.32700 -29.13557 -27.53813 -26.49170 -25.16383 -24.78542 -23.52862 -20.82533 -20.14707 -19.14032 -18.33586 -17.54102 -17.19400 -16.32644 -16.28828 -16.10516 -15.72763 -15.60302 -15.20133 -14.80778 -14.53387 -13.99120 -13.68496 -13.43288 -13.02987 -12.81111 -12.76675 -12.48735 -12.48076 -12.04899 -11.98979 -11.87603 -11.71634 -11.62145 -11.58546 -11.40274 -11.23140 -11.05519 -10.70159 -10.64854 -10.61524 -10.55941 -10.26287 -10.21657 -10.06592 -9.77554 -9.35217 -9.19766 -8.57623 -7.55942 -6.29515 -3.76162 0.42446 2.53585 2.90551 3.06510 3.20591 3.26924 3.28659 3.59678 3.97753 4.15446 4.36273 4.63241 4.91632 5.03600 5.05089 5.16804 5.17574 5.20354 5.23947 5.43180 5.51340 5.53437 5.55437 5.65250 5.70015 6.01219 6.05471 6.13953 6.16120 6.33888 6.36251 6.56553 6.60923 6.68822 6.79776 6.90999 7.33226 7.47783 7.86070 8.04117 8.80800 9.01495 9.32991 9.75992 10.77658 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.007065 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.960469 B = 3962.201409 C = 6067.416232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.130 4.130 6 C 0.129 3.871 7 N -0.533 5.533 8 C -0.280 4.280 9 H 0.094 0.906 10 C 0.014 3.986 11 N -0.861 5.861 12 Si 0.921 3.079 13 H -0.284 1.284 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.604 3.396 17 O -0.486 6.486 18 C -0.568 4.568 19 S 2.394 3.606 20 C -0.642 4.642 21 O -0.945 6.945 22 O -0.952 6.952 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.085 4.085 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.271 0.729 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.131 0.869 41 H 0.083 0.917 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 -2.248 -2.502 7.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.169 4.169 6 C 0.003 3.997 7 N -0.260 5.260 8 C -0.407 4.407 9 H 0.112 0.888 10 C -0.188 4.188 11 N -0.505 5.505 12 Si 0.749 3.251 13 H -0.210 1.210 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.390 3.610 17 O -0.357 6.357 18 C -0.664 4.664 19 S 2.580 3.420 20 C -0.792 4.792 21 O -0.942 6.942 22 O -0.948 6.948 23 C -0.140 4.140 24 C -0.160 4.160 25 C -0.124 4.124 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.149 0.851 41 H 0.101 0.899 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.628 -1.909 -3.169 7.590 hybrid contribution 0.899 -0.569 1.014 1.470 sum -5.729 -2.478 -2.154 6.603 Atomic orbital electron populations 1.23193 0.77144 1.03152 1.02425 1.86534 1.22904 1.34238 1.84530 1.23980 0.92282 0.81024 0.71812 1.90647 1.67277 1.36186 1.45074 1.22033 0.85996 1.02860 1.06036 1.21049 0.82515 0.92178 1.03924 1.42655 1.02351 1.76538 1.04493 1.19498 0.90664 1.46343 0.84161 0.88825 1.24914 0.96961 0.98597 0.98301 1.69345 1.09578 1.44386 1.27156 0.85984 0.79497 0.77986 0.81640 1.21014 1.21323 1.20123 1.17460 0.79621 0.83587 0.80364 1.90441 1.34681 1.37296 1.73278 1.31650 1.12921 1.06197 1.15613 1.08858 0.77175 0.78039 0.77922 1.30106 1.14933 1.22890 1.11268 1.93543 1.32392 1.85458 1.82773 1.93518 1.86634 1.60013 1.54674 1.22610 0.99488 0.90979 1.00890 1.23078 0.93910 0.97180 1.01796 1.22470 0.94458 0.96848 0.98604 0.92129 0.91996 0.88569 0.88275 0.87152 0.90613 0.89988 0.91731 0.85124 0.86548 0.84886 0.88789 0.90775 0.93239 0.85082 0.89895 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.39 10.56 -39.24 -0.41 -5.81 16 3 C 0.47 7.88 7.96 36.01 0.29 8.17 16 4 O -0.50 -9.61 15.73 -18.75 -0.29 -9.91 16 5 C -0.13 -2.22 6.14 -27.88 -0.17 -2.39 16 6 C 0.13 2.48 3.83 -4.03 -0.02 2.46 16 7 N -0.53 -11.57 1.75 -114.80 -0.20 -11.77 16 8 C -0.28 -6.50 9.75 -14.93 -0.15 -6.65 16 9 H 0.09 2.08 7.86 -52.49 -0.41 1.67 16 10 C 0.01 0.34 5.12 -17.47 -0.09 0.25 16 11 N -0.86 -20.81 6.25 55.50 0.35 -20.46 16 12 Si 0.92 19.40 29.57 -169.99 -5.03 14.38 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.60 13.20 2.68 -10.99 -0.03 13.17 16 17 O -0.49 -11.67 14.21 5.55 0.08 -11.59 16 18 C -0.57 -10.96 0.76 -90.96 -0.07 -11.03 16 19 S 2.39 43.03 5.10 -107.50 -0.55 42.48 16 20 C -0.64 -9.93 9.33 101.05 0.94 -8.98 16 21 O -0.94 -18.73 16.33 -57.83 -0.94 -19.67 16 22 O -0.95 -18.44 17.08 -57.83 -0.99 -19.43 16 23 C -0.10 -1.85 6.75 -25.92 -0.18 -2.03 16 24 C -0.12 -2.26 7.57 -25.92 -0.20 -2.46 16 25 C -0.09 -1.57 6.78 -25.92 -0.18 -1.75 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.06 0.69 8.13 -51.92 -0.42 0.27 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 32 H 0.08 1.62 5.35 -51.93 -0.28 1.34 16 33 H 0.27 6.48 8.32 -40.82 -0.34 6.14 16 34 H 0.13 2.09 7.12 -51.93 -0.37 1.72 16 35 H 0.12 1.46 8.14 -51.92 -0.42 1.04 16 36 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 37 H 0.09 1.79 6.35 -51.93 -0.33 1.46 16 38 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.13 2.82 5.54 -51.93 -0.29 2.54 16 41 H 0.08 1.38 7.29 -51.92 -0.38 1.00 16 42 H 0.10 1.97 7.41 -51.93 -0.38 1.59 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -30.21 351.58 -7.26 -37.47 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.79 Total: 8.79 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 1.23 Total: -9.78 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.15 Total: -32.23 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -2.56 Total: -66.41 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 16 Polarization: 43.03 SS G_CDS: -0.55 Total: 42.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.21 -7.26 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132452819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.173 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds