Wall clock time and date at job start Tue Mar 31 2020 16:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34222 * 117.00240 * 2 1 4 4 O 1.20826 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46821 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46764 * 179.97438 * 6 5 3 8 8 C 1.37102 * 119.99850 * 269.99882 * 7 6 5 9 9 H 1.08001 * 120.00048 * 5.13377 * 8 7 6 10 10 C 1.38946 * 119.99510 * 185.12793 * 8 7 6 11 11 N 1.31414 * 120.00338 * 11.76035 * 10 8 7 12 12 Si 1.86805 * 119.99800 * 191.75236 * 10 8 7 13 13 H 1.48504 * 109.46751 * 94.99940 * 12 10 8 14 14 H 1.48503 * 109.47122 * 214.99774 * 12 10 8 15 15 H 1.48494 * 109.46954 * 335.00080 * 12 10 8 16 16 C 1.34770 * 119.99593 * 90.00177 * 7 6 5 17 17 O 1.21290 * 119.99757 * 241.77668 * 16 7 6 18 18 C 1.50697 * 120.00410 * 61.78209 * 16 7 6 19 19 S 1.81400 * 112.90808 * 253.32163 * 18 16 7 20 20 C 1.81399 * 101.91877 * 315.13124 * 19 18 16 21 21 O 1.42096 * 108.57966 * 69.61803 * 19 18 16 22 22 O 1.42099 * 108.58067 * 200.64612 * 19 18 16 23 23 C 1.53783 * 113.61288 * 24.56697 * 18 16 7 24 24 C 1.53786 * 87.08054 * 89.12040 * 23 18 16 25 25 C 1.53781 * 87.08030 * 25.43123 * 24 23 18 26 26 H 1.08997 * 109.47215 * 300.00649 * 1 2 3 27 27 H 1.09008 * 109.46863 * 60.00418 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47185 * 59.99437 * 5 3 2 30 30 H 1.08998 * 109.46728 * 299.99032 * 5 3 2 31 31 H 1.09007 * 109.47066 * 60.00024 * 6 5 3 32 32 H 1.08997 * 109.47380 * 299.99968 * 6 5 3 33 33 H 0.96996 * 120.00255 * 184.98757 * 11 10 8 34 34 H 1.08998 * 109.47450 * 65.45328 * 20 19 18 35 35 H 1.09006 * 109.47264 * 185.45159 * 20 19 18 36 36 H 1.09005 * 109.47179 * 305.45183 * 20 19 18 37 37 H 1.08995 * 113.61521 * 334.57426 * 23 18 16 38 38 H 1.09001 * 113.61909 * 203.66667 * 23 18 16 39 39 H 1.09005 * 113.61478 * 139.98097 * 24 23 18 40 40 H 1.08992 * 113.61106 * 270.88424 * 24 23 18 41 41 H 1.09009 * 113.61150 * 89.11381 * 25 24 23 42 42 H 1.08991 * 113.61548 * 219.93570 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4633 2.8186 -0.0011 8 6 6.1477 2.8549 1.1863 9 1 5.6160 2.7436 2.1198 10 6 7.5255 3.0347 1.1887 11 7 8.1426 3.3987 0.0870 12 14 8.5007 2.7593 2.7580 13 1 9.0375 1.3747 2.7705 14 1 9.6256 3.7269 2.8180 15 1 7.6142 2.9572 3.9327 16 6 6.1362 2.8534 -1.1682 17 8 6.9170 1.9674 -1.4447 18 6 5.9186 3.9932 -2.1297 19 16 4.9530 3.5122 -3.5881 20 6 5.7242 1.9351 -4.0446 21 8 3.6146 3.2610 -3.1822 22 8 5.1987 4.4530 -4.6243 23 6 5.4160 5.2806 -1.4554 24 6 6.8931 5.6598 -1.2570 25 6 7.2038 4.7664 -2.4695 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.9557 0.7807 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 3.6108 3.2363 0.8890 32 1 3.6101 3.2359 -0.8910 33 1 9.1108 3.4541 0.0690 34 1 5.5453 1.2020 -3.2581 35 1 5.2933 1.5772 -4.9798 36 1 6.7974 2.0784 -4.1704 37 1 4.8813 5.1045 -0.5220 38 1 4.8810 5.9476 -2.1315 39 1 7.0996 6.7163 -1.4287 40 1 7.3168 5.2911 -0.3229 41 1 7.1575 5.2928 -3.4229 42 1 8.1130 4.1763 -2.3554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132452819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:28 Heat of formation + Delta-G solvation = -146.681710 kcal Electronic energy + Delta-G solvation = -29423.105104 eV Core-core repulsion = 25304.920358 eV Total energy + Delta-G solvation = -4118.184746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57318 -41.11335 -38.46675 -37.82865 -37.58740 -37.11857 -36.46448 -34.17641 -31.84275 -30.43262 -28.59422 -28.07902 -26.68302 -26.35132 -25.00568 -22.32987 -21.55844 -20.64622 -19.92944 -18.98173 -18.59647 -17.70375 -17.57981 -17.56784 -17.20385 -17.09107 -16.77425 -16.35254 -16.19442 -15.55910 -15.05256 -14.82740 -14.31437 -14.14228 -14.05816 -13.90369 -13.81328 -13.61903 -13.38159 -13.36307 -13.22141 -13.14470 -12.97990 -12.89895 -12.86929 -12.66738 -12.42149 -12.14629 -12.03841 -11.88106 -11.73959 -11.71753 -11.52404 -11.27540 -10.95874 -10.76764 -10.26541 -9.28113 -8.07350 -5.55820 -0.99904 1.20506 1.47932 1.54027 1.57530 1.60586 1.76677 1.94852 2.47815 2.53772 2.86353 3.08989 3.28162 3.46695 3.57652 3.83405 4.04135 4.04730 4.07999 4.16529 4.17779 4.24717 4.35991 4.37510 4.60415 4.61491 4.68801 4.73812 4.85795 4.90104 4.92324 5.12291 5.13303 5.29496 5.39305 5.41666 5.56205 5.90775 6.12973 6.75419 7.04567 7.30439 7.63867 8.03496 8.97869 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.007065 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.960469 B = 3962.201409 C = 6067.416232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.473 3.527 4 O -0.531 6.531 5 C -0.127 4.127 6 C 0.130 3.870 7 N -0.544 5.544 8 C -0.293 4.293 9 H 0.098 0.902 10 C -0.025 4.025 11 N -0.875 5.875 12 Si 0.974 3.026 13 H -0.295 1.295 14 H -0.292 1.292 15 H -0.268 1.268 16 C 0.608 3.392 17 O -0.515 6.515 18 C -0.582 4.582 19 S 2.413 3.587 20 C -0.634 4.634 21 O -0.963 6.963 22 O -0.961 6.961 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.078 4.078 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.263 0.737 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -2.760 -3.286 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.420 6.420 5 C -0.167 4.167 6 C 0.005 3.995 7 N -0.272 5.272 8 C -0.420 4.420 9 H 0.115 0.885 10 C -0.225 4.225 11 N -0.518 5.518 12 Si 0.802 3.198 13 H -0.223 1.223 14 H -0.219 1.219 15 H -0.193 1.193 16 C 0.396 3.604 17 O -0.388 6.388 18 C -0.676 4.676 19 S 2.600 3.400 20 C -0.786 4.786 21 O -0.960 6.960 22 O -0.958 6.958 23 C -0.139 4.139 24 C -0.160 4.160 25 C -0.117 4.117 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.524 -2.402 -3.906 8.811 hybrid contribution 1.083 -0.478 1.175 1.668 sum -6.441 -2.880 -2.730 7.565 Atomic orbital electron populations 1.23568 0.74824 1.05711 1.02575 1.86508 1.25113 1.32754 1.83887 1.23785 0.92044 0.81297 0.71215 1.90637 1.67759 1.37127 1.46469 1.21909 0.86712 1.01443 1.06604 1.21060 0.81237 0.93561 1.03618 1.42719 1.03181 1.77093 1.04181 1.19691 0.90944 1.46387 0.84951 0.88454 1.25497 0.97790 0.98987 1.00255 1.69462 1.08963 1.45326 1.28069 0.85163 0.78226 0.76698 0.79732 1.22275 1.21884 1.19256 1.17772 0.78674 0.83470 0.80525 1.90413 1.35712 1.38512 1.74187 1.31580 1.14007 1.05625 1.16425 1.08001 0.76436 0.78755 0.76824 1.30026 1.15414 1.20269 1.12878 1.93526 1.33542 1.85984 1.82951 1.93508 1.86738 1.61346 1.54219 1.22645 0.99352 0.90985 1.00884 1.22934 0.94014 0.98489 1.00601 1.22450 0.93266 0.96488 0.99489 0.91749 0.92159 0.84853 0.87991 0.86319 0.90613 0.90573 0.92555 0.85482 0.83003 0.84026 0.89982 0.88549 0.90899 0.87973 0.87711 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.21 10.56 -51.34 -0.54 -10.75 16 3 C 0.47 15.59 7.96 71.24 0.57 16.15 16 4 O -0.53 -19.93 15.73 21.96 0.35 -19.58 16 5 C -0.13 -4.30 6.14 29.85 0.18 -4.12 16 6 C 0.13 5.02 3.83 86.38 0.33 5.35 16 7 N -0.54 -23.77 1.75 -635.52 -1.11 -24.88 16 8 C -0.29 -13.74 9.75 84.04 0.82 -12.92 16 9 H 0.10 4.36 7.86 -2.91 -0.02 4.34 16 10 C -0.03 -1.22 5.12 84.93 0.44 -0.78 16 11 N -0.87 -43.03 6.25 21.66 0.14 -42.90 16 12 Si 0.97 40.42 29.57 68.60 2.03 42.45 16 13 H -0.30 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 16 C 0.61 26.59 2.68 87.66 0.24 26.83 16 17 O -0.51 -24.86 14.21 -3.06 -0.04 -24.91 16 18 C -0.58 -22.07 0.76 -11.01 -0.01 -22.07 16 19 S 2.41 82.56 5.10 -56.49 -0.29 82.27 16 20 C -0.63 -18.07 9.33 113.37 1.06 -17.02 16 21 O -0.96 -36.87 16.33 -127.37 -2.08 -38.95 16 22 O -0.96 -34.99 17.08 -127.37 -2.18 -37.17 16 23 C -0.10 -3.61 6.75 31.12 0.21 -3.40 16 24 C -0.12 -4.49 7.57 31.12 0.24 -4.26 16 25 C -0.08 -2.83 6.78 31.12 0.21 -2.62 16 26 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 28 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.08 2.86 8.00 -2.38 -0.02 2.84 16 32 H 0.08 3.01 5.35 -2.39 -0.01 3.00 16 33 H 0.26 12.92 8.32 -92.71 -0.77 12.15 16 34 H 0.13 3.84 7.12 -2.39 -0.02 3.83 16 35 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 37 H 0.08 3.14 6.35 -2.39 -0.02 3.13 16 38 H 0.10 3.00 8.10 -2.39 -0.02 2.98 16 39 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.10 4.47 5.54 -2.39 -0.01 4.45 16 41 H 0.10 3.29 7.29 -2.38 -0.02 3.27 16 42 H 0.08 3.24 7.41 -2.39 -0.02 3.23 16 Total: -1.00 -64.07 351.58 2.78 -61.29 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 1.04 Total: 30.27 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.47 Total: -17.14 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.98 Total: -67.78 kcal Atomic # 8 Polarization: -126.87 SS G_CDS: -4.50 Total: -131.36 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 82.56 SS G_CDS: -0.29 Total: 82.27 kcal Total: -64.07 2.78 -61.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132452819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.389 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds