Wall clock time and date at job start Tue Mar 31 2020 17:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34234 * 116.99640 * 2 1 4 4 O 1.20823 * 120.00454 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99566 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47751 * 60.00005 * 5 3 2 7 7 N 1.46504 * 109.47136 * 180.02562 * 5 3 2 8 8 C 1.39935 * 120.00257 * 205.00163 * 7 5 3 9 9 C 1.38863 * 120.02144 * 179.97438 * 8 7 5 10 10 C 1.38104 * 119.98178 * 179.97438 * 9 8 7 11 11 C 1.38706 * 120.01893 * 359.97438 * 10 9 8 12 12 O 1.36005 * 119.97804 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99661 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.46937 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00360 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99933 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99950 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00003 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47472 * 89.99472 * 18 16 14 20 20 H 1.48497 * 109.47040 * 209.99733 * 18 16 14 21 21 H 1.48502 * 109.47120 * 329.99219 * 18 16 14 22 22 C 1.38701 * 120.03850 * 0.27854 * 11 10 9 23 23 C 1.38110 * 120.01747 * 359.44420 * 22 11 10 24 24 C 1.53004 * 109.47307 * 299.99754 * 5 3 2 25 25 F 1.39898 * 109.46995 * 300.00380 * 24 5 3 26 26 F 1.39904 * 109.46888 * 59.99971 * 24 5 3 27 27 F 1.39900 * 109.47288 * 180.02562 * 24 5 3 28 28 H 1.08999 * 109.47726 * 60.00089 * 1 2 3 29 29 H 1.09003 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47406 * 300.00048 * 1 2 3 31 31 H 0.97005 * 119.99902 * 24.99549 * 7 5 3 32 32 H 1.08002 * 120.00354 * 359.95697 * 9 8 7 33 33 H 1.07998 * 119.99199 * 179.97438 * 10 9 8 34 34 H 1.08999 * 109.47144 * 300.00179 * 13 12 11 35 35 H 1.08998 * 109.47043 * 59.99778 * 13 12 11 36 36 H 0.96999 * 119.99272 * 180.02562 * 17 16 14 37 37 H 1.07998 * 119.99107 * 179.70516 * 22 11 10 38 38 H 1.07992 * 120.00938 * 180.27464 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9557 0.7810 -0.8907 7 7 3.9817 2.6798 0.0002 8 6 5.2331 3.0398 -0.5123 9 6 5.6270 4.3713 -0.5123 10 6 6.8624 4.7256 -1.0178 11 6 7.7099 3.7517 -1.5249 12 8 8.9261 4.1015 -2.0230 13 6 9.7473 3.0474 -2.5295 14 6 11.0462 3.6209 -3.0344 15 1 11.2268 4.6839 -2.9740 16 6 12.0045 2.7883 -3.5723 17 7 13.1384 3.2888 -4.0125 18 14 11.6925 0.9495 -3.6760 19 1 11.0430 0.6299 -4.9726 20 1 12.9832 0.2220 -3.5764 21 1 10.8033 0.5346 -2.5614 22 6 7.3151 2.4220 -1.5301 23 6 6.0823 2.0653 -1.0198 24 6 4.1138 0.5811 1.2483 25 9 3.6140 1.2151 2.3909 26 9 3.7171 -0.7605 1.2483 27 9 5.5109 0.6549 1.2481 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.3892 3.3606 0.3558 32 1 4.9672 5.1297 -0.1173 33 1 7.1688 5.7612 -1.0182 34 1 9.9517 2.3315 -1.7334 35 1 9.2299 2.5443 -3.3464 36 1 13.8123 2.7030 -4.3913 37 1 7.9736 1.6649 -1.9295 38 1 5.7769 1.0295 -1.0199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171015562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:31 Heat of formation + Delta-G solvation = -251.003192 kcal Electronic energy + Delta-G solvation = -28763.189616 eV Core-core repulsion = 23963.180459 eV Total energy + Delta-G solvation = -4800.009157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -51.26001 -48.77550 -48.72259 -41.97097 -40.95644 -39.11732 -37.90262 -36.32200 -34.92593 -32.20785 -31.97478 -30.46888 -28.79436 -28.01357 -25.44109 -25.09885 -23.58074 -22.52331 -21.99170 -20.11913 -19.72537 -19.61775 -19.48153 -18.70478 -18.48870 -18.28788 -17.46637 -17.40332 -16.79709 -16.49136 -16.14509 -15.91363 -15.59849 -15.50904 -15.17601 -15.11130 -14.86859 -14.85413 -14.76042 -14.66865 -14.34472 -14.26742 -14.13299 -13.84211 -13.49753 -13.37474 -13.07854 -12.99733 -12.91993 -12.23218 -12.02800 -11.98570 -11.96595 -11.83689 -11.34618 -10.94301 -10.67599 -9.95805 -8.41492 -8.28362 -6.51860 0.37882 0.42844 0.63355 0.96773 1.33130 1.36316 1.46610 1.58359 1.86013 2.26680 2.49662 2.69755 2.82512 2.88301 2.92117 3.09914 3.41939 3.56043 3.87684 3.96585 4.21624 4.28364 4.30802 4.40416 4.49520 4.54677 4.69983 4.83441 4.93849 4.99959 5.11041 5.19419 5.27392 5.52495 5.61702 5.91996 6.07257 6.21735 6.45649 6.52943 6.85683 7.12781 8.75130 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.002794 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.462321 B =10020.195934 C =10601.011331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.470 3.530 4 O -0.493 6.493 5 C 0.125 3.875 6 H 0.178 0.822 7 N -0.718 5.718 8 C 0.157 3.843 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.067 3.933 12 O -0.337 6.337 13 C 0.183 3.817 14 C -0.554 4.554 15 H 0.034 0.966 16 C 0.018 3.982 17 N -0.937 5.937 18 Si 0.951 3.049 19 H -0.255 1.255 20 H -0.272 1.272 21 H -0.242 1.242 22 C -0.178 4.178 23 C -0.139 4.139 24 C 0.440 3.560 25 F -0.183 7.183 26 F -0.166 7.166 27 F -0.171 7.171 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.068 0.932 31 H 0.422 0.578 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.275 0.725 37 H 0.126 0.874 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.354 -10.659 10.502 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.310 3.690 4 O -0.380 6.380 5 C 0.013 3.987 6 H 0.195 0.805 7 N -0.356 5.356 8 C 0.059 3.941 9 C -0.145 4.145 10 C -0.143 4.143 11 C 0.021 3.979 12 O -0.251 6.251 13 C 0.109 3.891 14 C -0.591 4.591 15 H 0.052 0.948 16 C -0.181 4.181 17 N -0.575 5.575 18 Si 0.772 3.228 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.165 1.165 22 C -0.198 4.198 23 C -0.161 4.161 24 C 0.383 3.617 25 F -0.165 7.165 26 F -0.148 7.148 27 F -0.152 7.152 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.262 0.738 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.315 -10.370 10.398 32.788 hybrid contribution 0.414 -0.298 0.060 0.513 sum -28.902 -10.668 10.459 32.535 Atomic orbital electron populations 1.23755 0.72999 1.06511 1.03265 1.86537 1.26185 1.30520 1.82839 1.22644 0.90075 0.82816 0.73418 1.90718 1.66122 1.36788 1.44394 1.21330 0.90423 0.88109 0.98800 0.80473 1.43874 1.17479 1.03940 1.70297 1.17518 0.85530 0.93476 0.97558 1.20545 0.96162 0.94500 1.03244 1.20399 0.93458 0.98986 1.01434 1.19529 0.86493 0.94296 0.97593 1.86085 1.25933 1.38113 1.74946 1.20589 0.88450 0.86621 0.93453 1.21052 1.00339 0.95524 1.42216 0.94751 1.25796 0.93837 1.05081 0.93362 1.70015 1.08006 1.38388 1.41103 0.85672 0.79172 0.77371 0.80635 1.17976 1.19653 1.16499 1.21182 0.98656 0.95002 1.04939 1.20614 0.93634 0.99304 1.02542 1.21143 0.76777 0.77784 0.86038 1.93202 1.87215 1.82000 1.54046 1.93263 1.90395 1.34471 1.96628 1.93279 1.29334 1.96028 1.96588 0.90975 0.84487 0.91327 0.73823 0.82383 0.84601 0.95791 0.95720 0.91534 0.85657 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.55 113.37 1.20 1.39 16 2 O -0.35 -4.49 9.54 -51.46 -0.49 -4.98 16 3 C 0.47 7.37 7.05 71.24 0.50 7.88 16 4 O -0.49 -9.57 15.59 21.97 0.34 -9.23 16 5 C 0.13 1.92 2.40 44.25 0.11 2.02 16 6 H 0.18 1.95 6.49 -2.39 -0.02 1.94 16 7 N -0.72 -12.63 5.04 -322.35 -1.63 -14.25 16 8 C 0.16 3.55 6.33 38.15 0.24 3.79 16 9 C -0.12 -2.91 9.89 22.39 0.22 -2.69 16 10 C -0.12 -3.81 9.98 22.35 0.22 -3.59 16 11 C 0.07 2.56 6.69 22.49 0.15 2.71 16 12 O -0.34 -16.18 10.12 -93.60 -0.95 -17.12 16 13 C 0.18 9.15 3.56 71.23 0.25 9.40 16 14 C -0.55 -33.45 9.99 25.60 0.26 -33.19 16 15 H 0.03 2.34 8.06 -2.91 -0.02 2.31 16 16 C 0.02 1.06 5.47 84.65 0.46 1.52 16 17 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 18 Si 0.95 42.10 27.47 68.60 1.88 43.99 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 22 C -0.18 -5.88 9.03 22.35 0.20 -5.68 16 23 C -0.14 -3.51 7.84 22.39 0.18 -3.34 16 24 C 0.44 7.80 2.82 71.98 0.20 8.01 16 25 F -0.18 -3.61 16.94 44.97 0.76 -2.85 16 26 F -0.17 -2.80 16.21 44.97 0.73 -2.07 16 27 F -0.17 -3.66 14.63 44.97 0.66 -3.01 16 28 H 0.07 0.50 8.13 -2.39 -0.02 0.48 16 29 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.51 8.13 -2.38 -0.02 0.49 16 31 H 0.42 6.82 7.81 -92.70 -0.72 6.09 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.02 1.16 6.73 -2.39 -0.02 1.15 16 35 H 0.03 1.17 7.07 -2.39 -0.02 1.15 16 36 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.13 4.19 6.29 -2.91 -0.02 4.18 16 38 H 0.14 2.76 5.50 -2.91 -0.02 2.74 16 Total: -1.00 -73.09 338.64 6.16 -66.93 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.36 Total: 12.23 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.19 Total: -11.77 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.33 Total: -72.12 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.10 Total: -31.34 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 2.15 Total: -7.93 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.99 kcal Total: -73.09 6.16 -66.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171015562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.073 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds