Wall clock time and date at job start Tue Mar 31 2020 17:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00362 * 2 1 4 4 O 1.20830 * 120.00104 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00153 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.46829 * 299.99642 * 5 3 2 7 7 N 1.46499 * 109.46882 * 180.02562 * 5 3 2 8 8 C 1.39935 * 119.99912 * 155.00339 * 7 5 3 9 9 C 1.38864 * 120.02141 * 179.97438 * 8 7 5 10 10 C 1.38114 * 119.98209 * 179.97438 * 9 8 7 11 11 C 1.38701 * 120.01508 * 0.02562 * 10 9 8 12 12 O 1.36005 * 119.97449 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99661 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46992 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99812 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99883 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00003 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47087 * 90.00241 * 18 16 14 20 20 H 1.48501 * 109.47333 * 210.00401 * 18 16 14 21 21 H 1.48504 * 109.47204 * 330.00819 * 18 16 14 22 22 C 1.38700 * 120.04364 * 0.23198 * 11 10 9 23 23 C 1.38114 * 120.01604 * 359.48907 * 22 11 10 24 24 C 1.52995 * 109.46916 * 59.99976 * 5 3 2 25 25 F 1.39901 * 109.47019 * 180.02562 * 24 5 3 26 26 F 1.39900 * 109.47199 * 299.99806 * 24 5 3 27 27 F 1.39902 * 109.47427 * 60.00109 * 24 5 3 28 28 H 1.09000 * 109.46967 * 300.00688 * 1 2 3 29 29 H 1.09000 * 109.46911 * 59.99777 * 1 2 3 30 30 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00254 * 334.99132 * 7 5 3 32 32 H 1.07997 * 120.00795 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.98766 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47352 * 299.99796 * 13 12 11 35 35 H 1.08999 * 109.47144 * 59.99821 * 13 12 11 36 36 H 0.97005 * 119.99663 * 180.02562 * 17 16 14 37 37 H 1.08000 * 119.99003 * 179.72453 * 22 11 10 38 38 H 1.07993 * 120.00927 * 180.25438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8891 7 7 3.9818 2.6796 0.0002 8 6 5.2337 3.0388 0.5120 9 6 5.6281 4.3702 0.5124 10 6 6.8636 4.7239 1.0182 11 6 7.7106 3.7495 1.5252 12 8 8.9273 4.0986 2.0226 13 6 9.7480 3.0441 2.5290 14 6 11.0476 3.6168 3.0331 15 1 11.2288 4.6797 2.9724 16 6 12.0056 2.7837 3.5709 17 7 13.1395 3.2836 4.0113 18 14 11.6924 0.9451 3.6752 19 1 12.1755 0.2894 2.4334 20 1 12.4165 0.3851 4.8445 21 1 10.2361 0.6991 3.8304 22 6 7.3197 2.4187 1.5203 23 6 6.0822 2.0640 1.0201 24 6 4.1129 0.5814 -1.2502 25 9 5.5100 0.6540 -1.2504 26 9 3.7162 -0.7602 -1.2502 27 9 3.6123 1.2158 -2.3922 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.3891 3.3608 -0.3543 32 1 4.9689 5.1290 0.1173 33 1 7.1706 5.7593 1.0182 34 1 9.2307 2.5416 3.3463 35 1 9.9515 2.3278 1.7330 36 1 13.8136 2.6974 4.3892 37 1 7.9817 1.6602 1.9111 38 1 5.7763 1.0283 1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171015563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:50 Heat of formation + Delta-G solvation = -230.094207 kcal Electronic energy + Delta-G solvation = -28761.666454 eV Core-core repulsion = 23962.563979 eV Total energy + Delta-G solvation = -4799.102475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -50.43431 -47.94010 -47.89275 -41.27190 -39.70795 -37.91866 -37.09071 -35.24648 -32.81007 -31.18681 -30.78712 -28.76119 -28.06633 -26.95003 -24.65686 -23.52067 -22.38405 -21.18615 -21.05939 -19.28169 -18.92195 -18.81539 -18.02188 -17.76217 -17.44712 -16.84867 -16.64422 -16.33652 -15.47650 -15.05218 -14.82686 -14.76007 -14.70438 -14.39642 -14.29927 -14.10701 -14.02849 -13.99820 -13.89705 -13.52180 -13.33427 -13.10085 -12.92062 -12.63765 -12.36422 -12.30967 -11.97565 -11.44322 -11.39726 -11.26258 -11.09386 -10.64236 -10.61288 -9.99080 -9.48156 -9.33433 -8.82017 -8.71552 -7.08619 -6.23275 -4.24956 1.17793 1.54037 1.60829 1.80609 2.37399 2.70588 3.17821 3.24156 3.25290 3.29827 3.55641 3.83369 4.08643 4.13755 4.22336 4.25773 4.29608 4.55892 4.66102 4.97057 5.00347 5.04345 5.07468 5.49572 5.54664 5.58884 5.63265 6.07199 6.27573 6.29043 6.38796 6.68982 6.74649 6.78195 6.86934 7.09559 7.36514 7.40630 8.02523 8.54532 8.86922 9.32974 10.89125 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002794 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.732673 B =10020.551326 C =10601.087839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.464 3.536 4 O -0.474 6.474 5 C 0.127 3.873 6 H 0.156 0.844 7 N -0.726 5.726 8 C 0.138 3.862 9 C -0.129 4.129 10 C -0.122 4.122 11 C 0.116 3.884 12 O -0.304 6.304 13 C 0.168 3.832 14 C -0.528 4.528 15 H 0.086 0.914 16 C 0.077 3.923 17 N -0.889 5.889 18 Si 0.873 3.127 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.171 4.171 23 C -0.139 4.139 24 C 0.438 3.562 25 F -0.160 7.160 26 F -0.170 7.170 27 F -0.178 7.178 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.269 0.731 37 H 0.132 0.868 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.329 -8.091 -9.778 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.304 3.696 4 O -0.359 6.359 5 C 0.014 3.986 6 H 0.174 0.826 7 N -0.364 5.364 8 C 0.042 3.958 9 C -0.150 4.150 10 C -0.141 4.141 11 C 0.067 3.933 12 O -0.217 6.217 13 C 0.094 3.906 14 C -0.566 4.566 15 H 0.104 0.896 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.191 4.191 23 C -0.161 4.161 24 C 0.381 3.619 25 F -0.142 7.142 26 F -0.152 7.152 27 F -0.159 7.159 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.235 -7.801 -9.641 29.019 hybrid contribution -0.329 -1.162 -0.205 1.225 sum -26.564 -8.963 -9.846 29.714 Atomic orbital electron populations 1.23439 0.74710 1.04551 1.03072 1.86539 1.24544 1.31418 1.83362 1.22766 0.90298 0.82667 0.73891 1.90720 1.65770 1.36112 1.43285 1.21179 0.89981 0.88945 0.98466 0.82645 1.43912 1.18349 1.02957 1.71187 1.17452 0.85133 0.93735 0.99476 1.20258 0.96984 0.93420 1.04366 1.20214 0.92948 0.99188 1.01743 1.19168 0.87221 0.92379 0.94507 1.86179 1.23766 1.38248 1.73487 1.20969 0.90143 0.86435 0.93014 1.20784 0.97314 0.97496 1.40960 0.89588 1.24712 0.94599 0.98767 0.94511 1.69856 1.06633 1.35817 1.40296 0.86889 0.79114 0.85491 0.78562 1.19615 1.20485 1.18926 1.21162 0.97401 0.96024 1.04489 1.20413 0.94635 0.97696 1.03326 1.21079 0.77322 0.77552 0.85974 1.93296 1.28361 1.95962 1.96541 1.93252 1.90522 1.34757 1.96649 1.93210 1.87189 1.81858 1.53643 0.91283 0.91353 0.87247 0.74516 0.85612 0.84944 0.96468 0.96895 0.92076 0.85068 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.34 -2.74 9.54 -39.24 -0.37 -3.11 16 3 C 0.46 4.31 7.05 36.01 0.25 4.57 16 4 O -0.47 -5.20 15.59 -18.75 -0.29 -5.50 16 5 C 0.13 1.18 2.40 -69.08 -0.17 1.01 16 6 H 0.16 1.17 6.48 -51.93 -0.34 0.84 16 7 N -0.73 -7.58 5.05 -53.25 -0.27 -7.85 16 8 C 0.14 1.76 6.33 -83.69 -0.53 1.23 16 9 C -0.13 -1.68 9.89 -39.40 -0.39 -2.07 16 10 C -0.12 -1.91 9.98 -39.46 -0.39 -2.31 16 11 C 0.12 2.18 6.69 -39.24 -0.26 1.92 16 12 O -0.30 -7.02 10.12 -19.76 -0.20 -7.22 16 13 C 0.17 4.11 3.56 36.01 0.13 4.24 16 14 C -0.53 -15.20 9.99 -34.44 -0.34 -15.55 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 18 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 22 C -0.17 -2.92 9.03 -39.46 -0.36 -3.27 16 23 C -0.14 -1.94 7.85 -39.39 -0.31 -2.25 16 24 C 0.44 4.51 2.82 37.15 0.10 4.61 16 25 F -0.16 -1.93 14.64 2.25 0.03 -1.90 16 26 F -0.17 -1.68 16.21 2.25 0.04 -1.64 16 27 F -0.18 -1.96 16.94 2.25 0.04 -1.93 16 28 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.42 4.06 7.81 -40.82 -0.32 3.74 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.02 0.42 6.73 -51.93 -0.35 0.07 16 35 H 0.01 0.31 7.07 -51.93 -0.37 -0.05 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.13 2.27 6.29 -52.49 -0.33 1.94 16 38 H 0.12 1.33 5.50 -52.49 -0.29 1.05 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -32.15 338.65 -4.81 -36.96 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.69 Total: 1.63 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.30 Total: -4.51 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.50 Total: -33.75 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.87 Total: -15.83 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -4.81 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171015563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.135 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds