Wall clock time and date at job start Tue Mar 31 2020 17:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00362 * 2 1 4 4 O 1.20830 * 120.00104 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00153 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.46829 * 299.99642 * 5 3 2 7 7 N 1.46499 * 109.46882 * 180.02562 * 5 3 2 8 8 C 1.39935 * 119.99912 * 155.00339 * 7 5 3 9 9 C 1.38864 * 120.02141 * 179.97438 * 8 7 5 10 10 C 1.38114 * 119.98209 * 179.97438 * 9 8 7 11 11 C 1.38701 * 120.01508 * 0.02562 * 10 9 8 12 12 O 1.36005 * 119.97449 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99661 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46992 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99812 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99883 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00003 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47087 * 90.00241 * 18 16 14 20 20 H 1.48501 * 109.47333 * 210.00401 * 18 16 14 21 21 H 1.48504 * 109.47204 * 330.00819 * 18 16 14 22 22 C 1.38700 * 120.04364 * 0.23198 * 11 10 9 23 23 C 1.38114 * 120.01604 * 359.48907 * 22 11 10 24 24 C 1.52995 * 109.46916 * 59.99976 * 5 3 2 25 25 F 1.39901 * 109.47019 * 180.02562 * 24 5 3 26 26 F 1.39900 * 109.47199 * 299.99806 * 24 5 3 27 27 F 1.39902 * 109.47427 * 60.00109 * 24 5 3 28 28 H 1.09000 * 109.46967 * 300.00688 * 1 2 3 29 29 H 1.09000 * 109.46911 * 59.99777 * 1 2 3 30 30 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00254 * 334.99132 * 7 5 3 32 32 H 1.07997 * 120.00795 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.98766 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47352 * 299.99796 * 13 12 11 35 35 H 1.08999 * 109.47144 * 59.99821 * 13 12 11 36 36 H 0.97005 * 119.99663 * 180.02562 * 17 16 14 37 37 H 1.08000 * 119.99003 * 179.72453 * 22 11 10 38 38 H 1.07993 * 120.00927 * 180.25438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8891 7 7 3.9818 2.6796 0.0002 8 6 5.2337 3.0388 0.5120 9 6 5.6281 4.3702 0.5124 10 6 6.8636 4.7239 1.0182 11 6 7.7106 3.7495 1.5252 12 8 8.9273 4.0986 2.0226 13 6 9.7480 3.0441 2.5290 14 6 11.0476 3.6168 3.0331 15 1 11.2288 4.6797 2.9724 16 6 12.0056 2.7837 3.5709 17 7 13.1395 3.2836 4.0113 18 14 11.6924 0.9451 3.6752 19 1 12.1755 0.2894 2.4334 20 1 12.4165 0.3851 4.8445 21 1 10.2361 0.6991 3.8304 22 6 7.3197 2.4187 1.5203 23 6 6.0822 2.0640 1.0201 24 6 4.1129 0.5814 -1.2502 25 9 5.5100 0.6540 -1.2504 26 9 3.7162 -0.7602 -1.2502 27 9 3.6123 1.2158 -2.3922 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.3891 3.3608 -0.3543 32 1 4.9689 5.1290 0.1173 33 1 7.1706 5.7593 1.0182 34 1 9.2307 2.5416 3.3463 35 1 9.9515 2.3278 1.7330 36 1 13.8136 2.6974 4.3892 37 1 7.9817 1.6602 1.9111 38 1 5.7763 1.0283 1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171015563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:45 Heat of formation + Delta-G solvation = -251.006443 kcal Electronic energy + Delta-G solvation = -28762.573277 eV Core-core repulsion = 23962.563979 eV Total energy + Delta-G solvation = -4800.009298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -51.25971 -48.77650 -48.72056 -41.97090 -40.95637 -39.11754 -37.90206 -36.32184 -34.92680 -32.20798 -31.97476 -30.46863 -28.79520 -28.01453 -25.44110 -25.09900 -23.58088 -22.52333 -21.99185 -20.11935 -19.72470 -19.61773 -19.48170 -18.70472 -18.48865 -18.28805 -17.46658 -17.40313 -16.79845 -16.48697 -16.14836 -15.91321 -15.59734 -15.50949 -15.17605 -15.11120 -14.87102 -14.85283 -14.76297 -14.66328 -14.34533 -14.26089 -14.13448 -13.85169 -13.49456 -13.37345 -13.07622 -12.99632 -12.92381 -12.22055 -12.04699 -11.98582 -11.96760 -11.82988 -11.34246 -10.94574 -10.67557 -9.95771 -8.41470 -8.28384 -6.51846 0.37862 0.42804 0.63364 0.96736 1.33230 1.36280 1.46445 1.58337 1.85972 2.26656 2.49684 2.69767 2.82584 2.88339 2.92141 3.09796 3.41892 3.56031 3.87703 3.96591 4.21653 4.28357 4.30772 4.40417 4.49539 4.54688 4.69966 4.83448 4.93848 4.99958 5.11011 5.19401 5.27365 5.52494 5.61698 5.92004 6.07252 6.21713 6.45643 6.52944 6.85691 7.12796 8.75146 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002794 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.732673 B =10020.551326 C =10601.087839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.470 3.530 4 O -0.493 6.493 5 C 0.125 3.875 6 H 0.178 0.822 7 N -0.718 5.718 8 C 0.157 3.843 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.067 3.933 12 O -0.337 6.337 13 C 0.183 3.817 14 C -0.554 4.554 15 H 0.034 0.966 16 C 0.018 3.982 17 N -0.937 5.937 18 Si 0.951 3.049 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.240 1.240 22 C -0.178 4.178 23 C -0.139 4.139 24 C 0.440 3.560 25 F -0.171 7.171 26 F -0.166 7.166 27 F -0.183 7.183 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.422 0.578 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.276 0.724 37 H 0.126 0.874 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.364 -10.643 -10.497 32.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.310 3.690 4 O -0.380 6.380 5 C 0.013 3.987 6 H 0.195 0.805 7 N -0.356 5.356 8 C 0.059 3.941 9 C -0.145 4.145 10 C -0.143 4.143 11 C 0.021 3.979 12 O -0.251 6.251 13 C 0.109 3.891 14 C -0.591 4.591 15 H 0.052 0.948 16 C -0.181 4.181 17 N -0.575 5.575 18 Si 0.771 3.229 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.163 1.163 22 C -0.198 4.198 23 C -0.161 4.161 24 C 0.383 3.617 25 F -0.152 7.152 26 F -0.148 7.148 27 F -0.165 7.165 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.262 0.738 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.327 -10.354 -10.388 32.790 hybrid contribution 0.424 -0.301 -0.084 0.527 sum -28.903 -10.655 -10.472 32.536 Atomic orbital electron populations 1.23755 0.72991 1.06511 1.03266 1.86534 1.26189 1.30526 1.82832 1.22645 0.90078 0.82816 0.73419 1.90720 1.66127 1.36785 1.44403 1.21325 0.90431 0.88127 0.98787 0.80489 1.43872 1.17444 1.03919 1.70352 1.17518 0.85542 0.93489 0.97529 1.20547 0.96163 0.94500 1.03245 1.20400 0.93491 0.98994 1.01390 1.19528 0.86519 0.94280 0.97585 1.86085 1.25899 1.38108 1.74985 1.20591 0.88562 0.86587 0.93379 1.21053 1.00250 0.95546 1.42286 0.94752 1.25792 0.93822 1.05089 0.93367 1.70012 1.07939 1.38378 1.41178 0.85675 0.80507 0.77441 0.79238 1.18205 1.19573 1.16348 1.21183 0.98598 0.94977 1.05014 1.20614 0.93550 0.99320 1.02618 1.21136 0.76772 0.77781 0.86040 1.93279 1.29316 1.96037 1.96589 1.93262 1.90404 1.34467 1.96628 1.93204 1.87181 1.81981 1.54090 0.90985 0.91317 0.84484 0.73822 0.82384 0.84600 0.95591 0.95914 0.91532 0.85655 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.35 -4.49 9.54 -51.36 -0.49 -4.98 16 3 C 0.47 7.38 7.05 71.24 0.50 7.88 16 4 O -0.49 -9.58 15.59 21.95 0.34 -9.24 16 5 C 0.13 1.91 2.40 44.25 0.11 2.02 16 6 H 0.18 1.96 6.48 -2.39 -0.02 1.94 16 7 N -0.72 -12.63 5.05 -322.37 -1.63 -14.25 16 8 C 0.16 3.55 6.33 38.15 0.24 3.79 16 9 C -0.12 -2.91 9.89 22.39 0.22 -2.69 16 10 C -0.12 -3.81 9.98 22.35 0.22 -3.59 16 11 C 0.07 2.56 6.69 22.49 0.15 2.71 16 12 O -0.34 -16.17 10.12 -93.60 -0.95 -17.12 16 13 C 0.18 9.14 3.56 71.24 0.25 9.40 16 14 C -0.55 -33.45 9.99 25.60 0.26 -33.20 16 15 H 0.03 2.34 8.06 -2.91 -0.02 2.31 16 16 C 0.02 1.06 5.47 84.66 0.46 1.53 16 17 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 18 Si 0.95 42.10 27.47 68.60 1.88 43.98 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 22 C -0.18 -5.87 9.03 22.35 0.20 -5.67 16 23 C -0.14 -3.51 7.85 22.39 0.18 -3.34 16 24 C 0.44 7.80 2.82 71.98 0.20 8.00 16 25 F -0.17 -3.65 14.64 44.97 0.66 -2.99 16 26 F -0.17 -2.80 16.21 44.97 0.73 -2.07 16 27 F -0.18 -3.61 16.94 44.97 0.76 -2.85 16 28 H 0.07 0.50 8.13 -2.39 -0.02 0.48 16 29 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 30 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.42 6.82 7.81 -92.70 -0.72 6.09 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.03 1.24 6.73 -2.39 -0.02 1.23 16 35 H 0.02 1.09 7.07 -2.39 -0.02 1.07 16 36 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 37 H 0.13 4.19 6.29 -2.91 -0.02 4.18 16 38 H 0.14 2.76 5.50 -2.91 -0.02 2.74 16 Total: -1.00 -73.07 338.65 6.16 -66.91 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.36 Total: 12.24 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.19 Total: -11.77 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.33 Total: -72.11 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.10 Total: -31.34 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.15 Total: -7.91 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Total: -73.07 6.16 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171015563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.101 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds