Wall clock time and date at job start Tue Mar 31 2020 16:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00481 * 2 1 4 4 O 1.20824 * 119.99662 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00240 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47143 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47332 * 178.42682 * 6 5 3 8 8 C 1.36937 * 119.99996 * 305.19937 * 7 6 5 9 9 H 1.08003 * 119.99402 * 312.67286 * 8 7 6 10 10 C 1.38813 * 120.00392 * 132.66931 * 8 7 6 11 11 N 1.31622 * 119.99443 * 3.01973 * 10 8 7 12 12 Si 1.86798 * 120.00068 * 183.01759 * 10 8 7 13 13 H 1.48497 * 109.47198 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46999 * 120.00603 * 12 10 8 15 15 H 1.48504 * 109.46812 * 240.00344 * 12 10 8 16 16 S 1.65599 * 120.00099 * 125.19677 * 7 6 5 17 17 O 1.42091 * 104.27775 * 163.06842 * 16 7 6 18 18 O 1.42098 * 104.27669 * 35.20565 * 16 7 6 19 19 C 1.81410 * 104.44748 * 279.13692 * 16 7 6 20 20 C 1.53012 * 109.33618 * 72.98511 * 19 16 7 21 21 C 1.53228 * 109.37438 * 183.47022 * 20 19 16 22 22 C 1.51257 * 108.70022 * 305.66256 * 21 20 19 23 23 O 1.20762 * 120.85094 * 231.22879 * 22 21 20 24 24 C 1.51266 * 118.30176 * 51.25141 * 22 21 20 25 25 C 1.52957 * 109.41010 * 193.49267 * 19 16 7 26 26 H 1.09007 * 109.46731 * 299.99665 * 1 2 3 27 27 H 1.09001 * 109.47065 * 59.99107 * 1 2 3 28 28 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47605 * 60.00527 * 5 3 2 30 30 H 1.09003 * 109.47423 * 300.00214 * 5 3 2 31 31 H 1.08999 * 109.47158 * 58.43044 * 6 5 3 32 32 H 1.09001 * 109.47097 * 298.42430 * 6 5 3 33 33 H 0.97000 * 119.99257 * 179.97438 * 11 10 8 34 34 H 1.08997 * 109.41113 * 313.35400 * 19 16 7 35 35 H 1.09001 * 109.33324 * 63.60147 * 20 19 16 36 36 H 1.08993 * 109.65055 * 303.54479 * 20 19 16 37 37 H 1.09001 * 109.62117 * 185.84780 * 21 20 19 38 38 H 1.09004 * 109.62381 * 65.47742 * 21 20 19 39 39 H 1.09000 * 109.62723 * 68.37126 * 24 22 21 40 40 H 1.09004 * 109.62995 * 188.74331 * 24 22 21 41 41 H 1.08999 * 109.48383 * 56.38760 * 25 19 16 42 42 H 1.09001 * 109.49725 * 296.35320 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4628 2.8187 0.0375 8 6 6.1569 2.1789 1.0295 9 1 5.8456 2.2813 2.0586 10 6 7.2604 1.3988 0.7124 11 7 7.6753 1.3217 -0.5343 12 14 8.1563 0.4585 2.0550 13 1 7.4967 0.7115 3.3611 14 1 8.1161 -0.9948 1.7526 15 1 9.5690 0.9120 2.1184 16 16 6.2766 3.6792 -1.1199 17 8 7.5704 3.8747 -0.5661 18 8 5.4252 4.7819 -1.4000 19 6 6.3565 2.5587 -2.5443 20 6 4.9720 2.4581 -3.1880 21 6 5.0182 1.4459 -4.3375 22 6 6.1249 1.8429 -5.2890 23 8 5.9153 1.9471 -6.4738 24 6 7.5012 2.1055 -4.7189 25 6 7.3667 3.0973 -3.5587 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.9558 0.7809 -0.8909 30 1 3.9564 0.7804 0.8891 31 1 3.5877 3.2424 0.8762 32 1 3.6337 3.2297 -0.9031 33 1 8.4467 0.7769 -0.7558 34 1 6.6705 1.5699 -2.2102 35 1 4.6823 3.4349 -3.5753 36 1 4.2450 2.1313 -2.4447 37 1 4.0642 1.4469 -4.8646 38 1 5.2162 0.4501 -3.9407 39 1 7.9308 1.1722 -4.3548 40 1 8.1436 2.5270 -5.4921 41 1 8.3352 3.2243 -3.0749 42 1 7.0221 4.0584 -3.9402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213456372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:54 Heat of formation + Delta-G solvation = -198.341454 kcal Electronic energy + Delta-G solvation = -28884.274555 eV Core-core repulsion = 24763.849674 eV Total energy + Delta-G solvation = -4120.424881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.21262 -39.57135 -36.67181 -36.16025 -35.86942 -35.60157 -34.45620 -32.30094 -31.02375 -30.10137 -28.66318 -27.51418 -25.20054 -23.08623 -22.80366 -21.54911 -20.25348 -19.02786 -18.82518 -17.47098 -17.03797 -16.52401 -16.31792 -16.11818 -15.58193 -15.28764 -15.22348 -14.74111 -14.58639 -14.17533 -14.08381 -13.65538 -13.49857 -13.16860 -13.01329 -12.68156 -12.38160 -12.15303 -12.07541 -11.92463 -11.74456 -11.54499 -11.28686 -11.24578 -11.18674 -10.87765 -10.74742 -10.70211 -10.66185 -10.56464 -10.48264 -10.31673 -10.14325 -9.92894 -9.38675 -9.19359 -8.88764 -7.80821 -6.55925 -4.25726 1.68658 2.13219 2.47259 2.92735 3.14233 3.23896 3.26311 3.98702 4.30449 4.31979 4.73962 4.82401 4.95563 5.10543 5.12403 5.15250 5.18658 5.24138 5.40376 5.44546 5.47689 5.51148 5.55106 5.65543 5.68931 5.76398 6.02480 6.05290 6.07875 6.09221 6.13823 6.20728 6.34546 6.43657 6.54445 6.70507 6.91285 7.21177 7.50866 7.64332 7.99063 8.27653 8.85527 9.30472 10.55508 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.008333 B = 0.006693 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.178418 B = 4182.617382 C = 6020.180757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.512 6.512 5 C -0.121 4.121 6 C 0.142 3.858 7 N -0.863 5.863 8 C -0.282 4.282 9 H 0.084 0.916 10 C 0.046 3.954 11 N -0.898 5.898 12 Si 0.933 3.067 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.280 1.280 16 S 2.613 3.387 17 O -0.942 6.942 18 O -1.017 7.017 19 C -0.598 4.598 20 C -0.100 4.100 21 C -0.160 4.160 22 C 0.367 3.633 23 O -0.472 6.472 24 C -0.157 4.157 25 C -0.090 4.090 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.281 0.719 34 H 0.194 0.806 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -5.746 -2.537 8.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.400 6.400 5 C -0.160 4.160 6 C 0.014 3.986 7 N -0.692 5.692 8 C -0.416 4.416 9 H 0.102 0.898 10 C -0.158 4.158 11 N -0.541 5.541 12 Si 0.760 3.240 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.206 1.206 16 S 2.711 3.289 17 O -0.932 6.932 18 O -1.007 7.007 19 C -0.705 4.705 20 C -0.138 4.138 21 C -0.198 4.198 22 C 0.244 3.756 23 O -0.347 6.347 24 C -0.195 4.195 25 C -0.129 4.129 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.211 0.789 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.590 -4.520 -3.173 7.858 hybrid contribution 0.168 -1.196 0.317 1.249 sum -5.422 -5.716 -2.856 8.380 Atomic orbital electron populations 1.23189 0.77253 1.03182 1.02334 1.86556 1.22794 1.34244 1.84393 1.24339 0.92720 0.80928 0.71621 1.90651 1.67492 1.36290 1.45591 1.21876 0.84732 1.02266 1.07175 1.20940 0.83257 0.92170 1.02251 1.52878 1.09517 1.65544 1.41269 1.18964 1.10774 1.23368 0.88473 0.89790 1.25475 0.98028 0.95170 0.97119 1.69073 1.26770 1.40800 1.17433 0.85743 0.79398 0.78468 0.80351 1.19466 1.20708 1.20566 1.05405 0.74025 0.73932 0.75502 1.93432 1.40639 1.84659 1.74422 1.93442 1.69051 1.51475 1.86730 1.30996 0.99546 1.23895 1.16055 1.21388 0.95754 0.99528 0.97123 1.22198 0.98558 1.01568 0.97501 1.24970 0.91939 0.70196 0.88465 1.90364 1.85188 1.40184 1.18987 1.22172 0.95736 1.02314 0.99301 1.21135 1.00190 0.97224 0.94313 0.92125 0.92141 0.88550 0.87627 0.86041 0.92071 0.91058 0.90849 0.78939 0.90995 0.90210 0.89752 0.88026 0.87789 0.89743 0.89025 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.96 10.56 -39.26 -0.41 -5.38 16 3 C 0.46 7.19 7.96 36.00 0.29 7.48 16 4 O -0.51 -9.17 15.73 -18.75 -0.29 -9.46 16 5 C -0.12 -1.93 5.48 -27.89 -0.15 -2.08 16 6 C 0.14 2.69 4.20 -4.04 -0.02 2.67 16 7 N -0.86 -18.80 2.93 -59.90 -0.18 -18.97 16 8 C -0.28 -6.48 7.93 -15.06 -0.12 -6.60 16 9 H 0.08 1.90 7.83 -52.48 -0.41 1.49 16 10 C 0.05 1.04 4.84 -17.43 -0.08 0.96 16 11 N -0.90 -20.03 7.92 55.49 0.44 -19.59 16 12 Si 0.93 18.63 29.55 -169.99 -5.02 13.61 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 S 2.61 58.84 4.06 -107.50 -0.44 58.40 16 17 O -0.94 -24.50 15.21 -57.54 -0.88 -25.38 16 18 O -1.02 -24.49 16.55 -57.54 -0.95 -25.45 16 19 C -0.60 -10.73 2.18 -26.75 -0.06 -10.79 16 20 C -0.10 -1.57 4.87 -26.61 -0.13 -1.70 16 21 C -0.16 -2.18 6.16 -27.49 -0.17 -2.35 16 22 C 0.37 5.56 6.72 -28.48 -0.19 5.37 16 23 O -0.47 -8.35 17.89 6.00 0.11 -8.25 16 24 C -0.16 -2.19 6.17 -27.49 -0.17 -2.36 16 25 C -0.09 -1.46 5.20 -26.64 -0.14 -1.60 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.11 1.55 7.16 -51.93 -0.37 1.18 16 30 H 0.12 1.92 7.50 -51.93 -0.39 1.53 16 31 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.07 1.34 6.10 -51.93 -0.32 1.02 16 33 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 34 H 0.19 3.55 5.44 -51.92 -0.28 3.27 16 35 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 36 H 0.08 1.20 4.73 -51.93 -0.25 0.96 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -30.32 350.36 -8.01 -38.34 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.79 Total: 6.44 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.12 Total: -9.59 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.26 Total: -38.56 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -2.43 Total: -73.92 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 58.84 SS G_CDS: -0.44 Total: 58.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.32 -8.01 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213456372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.005 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds