Wall clock time and date at job start Tue Mar 31 2020 16:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34237 * 116.99640 * 2 1 4 4 O 1.20819 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99745 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47215 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47218 * 179.97438 * 6 5 3 8 8 C 1.37096 * 120.00020 * 265.55413 * 7 6 5 9 9 H 1.07997 * 120.00265 * 145.66710 * 8 7 6 10 10 C 1.38957 * 119.99942 * 325.67697 * 8 7 6 11 11 N 1.31411 * 120.00062 * 338.40768 * 10 8 7 12 12 Si 1.86797 * 119.99812 * 158.41257 * 10 8 7 13 13 H 1.48495 * 109.47499 * 59.99520 * 12 10 8 14 14 H 1.48504 * 109.47124 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47046 * 299.99428 * 12 10 8 16 16 C 1.34776 * 120.00098 * 85.56066 * 7 6 5 17 17 O 1.21291 * 119.99882 * 0.02562 * 16 7 6 18 18 C 1.50703 * 119.99885 * 179.97438 * 16 7 6 19 19 C 1.53000 * 109.46846 * 179.97438 * 18 16 7 20 20 H 1.09001 * 110.36616 * 307.16958 * 19 18 16 21 21 C 1.54171 * 110.31725 * 185.00590 * 19 18 16 22 22 C 1.53873 * 108.70191 * 213.18956 * 21 19 18 23 23 C 1.55049 * 106.62569 * 47.17706 * 22 21 19 24 24 S 1.83288 * 102.73965 * 317.47254 * 23 22 21 25 25 O 1.42100 * 109.35247 * 136.70606 * 24 23 22 26 26 O 1.42104 * 109.35205 * 269.90615 * 24 23 22 27 27 H 1.09009 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47541 * 299.99568 * 1 2 3 29 29 H 1.09001 * 109.47532 * 60.00583 * 1 2 3 30 30 H 1.08995 * 109.47448 * 59.99890 * 5 3 2 31 31 H 1.09001 * 109.47145 * 299.99973 * 5 3 2 32 32 H 1.08995 * 109.47101 * 59.99557 * 6 5 3 33 33 H 1.09001 * 109.46943 * 299.99976 * 6 5 3 34 34 H 0.96993 * 120.00141 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.46555 * 60.00329 * 18 16 7 36 36 H 1.08995 * 109.47127 * 300.00225 * 18 16 7 37 37 H 1.08997 * 109.64821 * 93.33103 * 21 19 18 38 38 H 1.09006 * 109.64104 * 333.03768 * 21 19 18 39 39 H 1.08994 * 110.02914 * 287.88576 * 22 21 19 40 40 H 1.09004 * 110.02848 * 166.46994 * 22 21 19 41 41 H 1.09002 * 110.78694 * 75.83746 * 23 22 21 42 42 H 1.08996 * 110.79062 * 199.10207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4629 2.8189 0.0002 8 6 6.1427 2.9461 1.1840 9 1 7.1074 2.4763 1.3059 10 6 5.5902 3.6793 2.2271 11 7 4.6668 4.5810 1.9796 12 14 6.1600 3.3832 3.9812 13 1 7.6160 3.6574 4.0817 14 1 5.4221 4.2863 4.9005 15 1 5.8953 1.9708 4.3560 16 6 6.1407 2.7646 -1.1635 17 8 5.5393 2.6526 -2.2108 18 6 7.6456 2.8441 -1.1634 19 6 8.1608 2.7592 -2.6016 20 1 7.7509 1.8809 -3.1002 21 6 9.7017 2.7128 -2.6163 22 6 10.2051 3.4360 -3.8778 23 6 9.4300 4.7763 -3.9597 24 16 7.7191 4.2810 -3.5276 25 8 7.1640 5.2358 -2.6336 26 8 7.0183 3.9259 -4.7118 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 3.6106 3.2357 0.8906 33 1 3.6099 3.2369 -0.8893 34 1 4.2815 5.0931 2.7076 35 1 8.0530 2.0166 -0.5825 36 1 7.9595 3.7888 -0.7197 37 1 10.0370 1.6757 -2.6299 38 1 10.0918 3.2103 -1.7283 39 1 10.0001 2.8316 -4.7614 40 1 11.2750 3.6278 -3.7962 41 1 9.8195 5.4932 -3.2369 42 1 9.4711 5.1859 -4.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001302618268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:59 Heat of formation + Delta-G solvation = -189.453632 kcal Electronic energy + Delta-G solvation = -27868.501594 eV Core-core repulsion = 23748.462118 eV Total energy + Delta-G solvation = -4120.039476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.03630 -38.84600 -36.59147 -36.53746 -36.12051 -35.45218 -34.98922 -32.16272 -31.78120 -30.60304 -27.68287 -26.92016 -25.08983 -24.34330 -22.63030 -21.22851 -20.24070 -19.20662 -18.25924 -17.41604 -16.90867 -16.66627 -16.38157 -16.19782 -16.11032 -15.69027 -15.11230 -14.63559 -14.45759 -14.36688 -13.85958 -13.76421 -13.56390 -13.36710 -12.99626 -12.63865 -12.43122 -12.19649 -11.94623 -11.80236 -11.65797 -11.61875 -11.51603 -11.50218 -11.31097 -11.23720 -10.97976 -10.90396 -10.71335 -10.52054 -10.47271 -10.28986 -10.08444 -9.99002 -9.70848 -9.20681 -8.63416 -7.67858 -6.43364 -4.15110 0.41744 2.69281 2.99051 3.05646 3.08061 3.17667 3.18693 3.75114 3.96858 4.03590 4.21506 4.44341 4.63730 4.72104 4.78740 4.91452 5.01155 5.04732 5.25995 5.32858 5.33648 5.41490 5.55236 5.60199 5.65494 5.71901 5.82392 5.83399 5.89159 5.95816 6.11354 6.23905 6.29659 6.41397 6.74987 6.89818 7.28844 7.43783 7.78971 8.19903 8.25315 8.96555 9.34654 9.79191 10.57630 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.004412 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.202682 B = 6344.310979 C = 8000.266203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.123 3.877 7 N -0.426 5.426 8 C -0.356 4.356 9 H 0.095 0.905 10 C 0.046 3.954 11 N -0.844 5.844 12 Si 0.915 3.085 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.462 3.538 17 O -0.610 6.610 18 C -0.097 4.097 19 C -0.527 4.527 20 H 0.145 0.855 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.613 4.613 24 S 2.393 3.607 25 O -0.919 6.919 26 O -0.934 6.934 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.274 0.726 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -6.287 -4.190 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.164 4.164 6 C -0.001 4.001 7 N -0.142 5.142 8 C -0.483 4.483 9 H 0.113 0.887 10 C -0.162 4.162 11 N -0.478 5.478 12 Si 0.741 3.259 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.251 3.749 17 O -0.498 6.498 18 C -0.138 4.138 19 C -0.637 4.637 20 H 0.163 0.837 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.740 4.740 24 S 2.573 3.427 25 O -0.916 6.916 26 O -0.931 6.931 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.152 0.848 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.357 -5.433 -4.766 9.626 hybrid contribution 0.781 -0.402 1.155 1.451 sum 7.138 -5.836 -3.611 9.902 Atomic orbital electron populations 1.23165 0.77381 1.02997 1.02359 1.86536 1.22743 1.34429 1.84710 1.24051 0.92372 0.80898 0.71799 1.90656 1.67229 1.36211 1.44920 1.21895 0.85952 1.03333 1.05184 1.21266 0.81980 0.90958 1.05901 1.43296 1.04595 1.61333 1.04964 1.19413 1.05722 1.33294 0.89881 0.88722 1.25404 0.96831 0.93416 1.00558 1.69930 1.26719 1.17859 1.33328 0.86205 0.79078 0.78574 0.82071 1.19582 1.20806 1.19710 1.20360 0.89316 0.81123 0.84124 1.90591 1.70622 1.57102 1.31505 1.21110 0.94998 1.05759 0.91907 1.30099 1.02838 1.21231 1.09547 0.83724 1.22058 0.91282 1.03234 0.98722 1.22160 1.01857 0.92531 0.99063 1.30860 1.25328 1.06160 1.11642 1.09330 0.77658 0.78929 0.76752 1.93635 1.74806 1.58473 1.64688 1.93558 1.69156 1.83593 1.46798 0.88644 0.92168 0.92159 0.88315 0.87806 0.86202 0.91476 0.91561 0.88180 0.87596 0.89109 0.89533 0.89814 0.88968 0.84784 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.55 101.05 1.07 1.51 16 2 O -0.37 -6.14 10.57 -39.28 -0.41 -6.55 16 3 C 0.47 9.21 7.96 36.00 0.29 9.50 16 4 O -0.50 -11.31 15.73 -18.74 -0.29 -11.60 16 5 C -0.12 -2.52 6.11 -27.88 -0.17 -2.69 16 6 C 0.12 3.02 4.21 -4.04 -0.02 3.00 16 7 N -0.43 -10.47 2.55 -114.82 -0.29 -10.76 16 8 C -0.36 -8.54 8.70 -14.93 -0.13 -8.67 16 9 H 0.10 2.06 6.98 -52.49 -0.37 1.69 16 10 C 0.05 1.13 4.94 -17.47 -0.09 1.04 16 11 N -0.84 -22.40 11.31 55.50 0.63 -21.78 16 12 Si 0.91 18.62 29.60 -169.99 -5.03 13.58 16 13 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 C 0.46 10.86 6.98 -10.98 -0.08 10.78 16 17 O -0.61 -15.67 14.76 5.55 0.08 -15.59 16 18 C -0.10 -1.75 3.39 -27.88 -0.09 -1.85 16 19 C -0.53 -7.85 2.78 -26.12 -0.07 -7.92 16 20 H 0.14 2.15 7.91 -51.93 -0.41 1.74 16 21 C -0.11 -1.13 5.94 -25.66 -0.15 -1.28 16 22 C -0.12 -1.03 6.48 -25.19 -0.16 -1.19 16 23 C -0.61 -6.60 7.29 38.24 0.28 -6.32 16 24 S 2.39 41.17 4.96 -107.50 -0.53 40.64 16 25 O -0.92 -20.05 16.65 -57.71 -0.96 -21.01 16 26 O -0.93 -19.21 18.15 -57.71 -1.05 -20.25 16 27 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 30 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 31 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 32 H 0.12 3.17 5.29 -51.93 -0.27 2.90 16 33 H 0.07 1.80 7.52 -51.93 -0.39 1.41 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 35 H 0.10 1.54 7.65 -51.93 -0.40 1.15 16 36 H 0.11 1.93 7.69 -51.93 -0.40 1.53 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -35.86 361.54 -7.76 -43.62 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.01 Total: 8.35 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 0.67 Total: -4.09 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.33 Total: -32.54 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -2.64 Total: -75.01 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -0.53 Total: 40.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.86 -7.76 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.835 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds