Wall clock time and date at job start Tue Mar 31 2020 16:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34237 * 116.99640 * 2 1 4 4 O 1.20819 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99745 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47215 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47218 * 179.97438 * 6 5 3 8 8 C 1.37096 * 120.00020 * 265.55413 * 7 6 5 9 9 H 1.07997 * 120.00265 * 145.66710 * 8 7 6 10 10 C 1.38957 * 119.99942 * 325.67697 * 8 7 6 11 11 N 1.31411 * 120.00062 * 338.40768 * 10 8 7 12 12 Si 1.86797 * 119.99812 * 158.41257 * 10 8 7 13 13 H 1.48495 * 109.47499 * 59.99520 * 12 10 8 14 14 H 1.48504 * 109.47124 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47046 * 299.99428 * 12 10 8 16 16 C 1.34776 * 120.00098 * 85.56066 * 7 6 5 17 17 O 1.21291 * 119.99882 * 0.02562 * 16 7 6 18 18 C 1.50703 * 119.99885 * 179.97438 * 16 7 6 19 19 C 1.53000 * 109.46846 * 179.97438 * 18 16 7 20 20 H 1.09001 * 110.36616 * 307.16958 * 19 18 16 21 21 C 1.54171 * 110.31725 * 185.00590 * 19 18 16 22 22 C 1.53873 * 108.70191 * 213.18956 * 21 19 18 23 23 C 1.55049 * 106.62569 * 47.17706 * 22 21 19 24 24 S 1.83288 * 102.73965 * 317.47254 * 23 22 21 25 25 O 1.42100 * 109.35247 * 136.70606 * 24 23 22 26 26 O 1.42104 * 109.35205 * 269.90615 * 24 23 22 27 27 H 1.09009 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47541 * 299.99568 * 1 2 3 29 29 H 1.09001 * 109.47532 * 60.00583 * 1 2 3 30 30 H 1.08995 * 109.47448 * 59.99890 * 5 3 2 31 31 H 1.09001 * 109.47145 * 299.99973 * 5 3 2 32 32 H 1.08995 * 109.47101 * 59.99557 * 6 5 3 33 33 H 1.09001 * 109.46943 * 299.99976 * 6 5 3 34 34 H 0.96993 * 120.00141 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.46555 * 60.00329 * 18 16 7 36 36 H 1.08995 * 109.47127 * 300.00225 * 18 16 7 37 37 H 1.08997 * 109.64821 * 93.33103 * 21 19 18 38 38 H 1.09006 * 109.64104 * 333.03768 * 21 19 18 39 39 H 1.08994 * 110.02914 * 287.88576 * 22 21 19 40 40 H 1.09004 * 110.02848 * 166.46994 * 22 21 19 41 41 H 1.09002 * 110.78694 * 75.83746 * 23 22 21 42 42 H 1.08996 * 110.79062 * 199.10207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4629 2.8189 0.0002 8 6 6.1427 2.9461 1.1840 9 1 7.1074 2.4763 1.3059 10 6 5.5902 3.6793 2.2271 11 7 4.6668 4.5810 1.9796 12 14 6.1600 3.3832 3.9812 13 1 7.6160 3.6574 4.0817 14 1 5.4221 4.2863 4.9005 15 1 5.8953 1.9708 4.3560 16 6 6.1407 2.7646 -1.1635 17 8 5.5393 2.6526 -2.2108 18 6 7.6456 2.8441 -1.1634 19 6 8.1608 2.7592 -2.6016 20 1 7.7509 1.8809 -3.1002 21 6 9.7017 2.7128 -2.6163 22 6 10.2051 3.4360 -3.8778 23 6 9.4300 4.7763 -3.9597 24 16 7.7191 4.2810 -3.5276 25 8 7.1640 5.2358 -2.6336 26 8 7.0183 3.9259 -4.7118 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 3.6106 3.2357 0.8906 33 1 3.6099 3.2369 -0.8893 34 1 4.2815 5.0931 2.7076 35 1 8.0530 2.0166 -0.5825 36 1 7.9595 3.7888 -0.7197 37 1 10.0370 1.6757 -2.6299 38 1 10.0918 3.2103 -1.7283 39 1 10.0001 2.8316 -4.7614 40 1 11.2750 3.6278 -3.7962 41 1 9.8195 5.4932 -3.2369 42 1 9.4711 5.1859 -4.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001302618268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:55 Heat of formation + Delta-G solvation = -216.801207 kcal Electronic energy + Delta-G solvation = -27869.687474 eV Core-core repulsion = 23748.462118 eV Total energy + Delta-G solvation = -4121.225356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -41.61545 -40.61373 -37.96989 -37.81243 -37.46705 -36.95957 -36.69013 -33.89862 -33.29293 -32.19708 -28.92394 -28.05847 -26.93061 -25.67475 -24.08887 -22.14371 -21.81794 -21.05160 -19.62639 -19.04798 -18.40477 -18.05185 -17.90789 -17.62346 -17.56405 -17.25933 -16.54894 -16.25506 -16.09739 -15.72216 -15.17661 -15.11400 -14.79180 -14.60983 -14.38492 -14.18107 -13.87014 -13.71765 -13.30000 -13.18676 -13.06086 -12.94996 -12.94154 -12.75323 -12.75023 -12.63637 -12.47590 -12.40812 -12.11098 -11.98553 -11.83110 -11.70682 -11.64753 -11.42563 -11.05962 -10.84094 -10.49162 -9.59844 -8.29093 -6.07307 -0.79509 1.08526 1.45900 1.52457 1.61128 1.63432 1.80532 1.97572 2.34985 2.83620 2.88583 3.07381 3.12573 3.56825 3.72971 3.78384 3.88346 3.94222 4.07116 4.19072 4.24908 4.28120 4.28417 4.34423 4.54811 4.55817 4.65665 4.67392 4.69962 4.79559 4.93405 4.98645 5.09242 5.18271 5.22675 5.27967 5.37154 5.51914 5.93344 6.36177 6.65650 7.09237 7.49111 7.94655 8.73773 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.004412 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.202682 B = 6344.310979 C = 8000.266203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.113 4.113 6 C 0.126 3.874 7 N -0.441 5.441 8 C -0.363 4.363 9 H 0.123 0.877 10 C -0.004 4.004 11 N -0.895 5.895 12 Si 0.988 3.012 13 H -0.253 1.253 14 H -0.294 1.294 15 H -0.260 1.260 16 C 0.443 3.557 17 O -0.643 6.643 18 C -0.093 4.093 19 C -0.512 4.512 20 H 0.141 0.859 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.565 4.565 24 S 2.335 3.665 25 O -0.991 6.991 26 O -0.993 6.993 27 H 0.140 0.860 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.024 0.976 34 H 0.271 0.729 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -8.656 -3.385 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.151 4.151 6 C 0.002 3.998 7 N -0.157 5.157 8 C -0.489 4.489 9 H 0.140 0.860 10 C -0.207 4.207 11 N -0.531 5.531 12 Si 0.811 3.189 13 H -0.177 1.177 14 H -0.220 1.220 15 H -0.184 1.184 16 C 0.234 3.766 17 O -0.533 6.533 18 C -0.133 4.133 19 C -0.625 4.625 20 H 0.159 0.841 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.698 4.698 24 S 2.526 3.474 25 O -0.988 6.988 26 O -0.990 6.990 27 H 0.158 0.842 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.405 -7.835 -3.968 13.616 hybrid contribution -0.486 0.314 0.802 0.989 sum 9.919 -7.521 -3.166 12.844 Atomic orbital electron populations 1.23593 0.74756 1.05961 1.02398 1.86503 1.25174 1.32166 1.83856 1.23860 0.92170 0.81318 0.71042 1.90646 1.67874 1.37614 1.46727 1.21649 0.86833 1.00355 1.06285 1.20990 0.82854 0.93338 1.02630 1.43598 1.04446 1.61773 1.05922 1.20002 1.06574 1.32885 0.89452 0.86001 1.26423 0.96756 0.92717 1.04835 1.70100 1.28950 1.19656 1.34404 0.85070 0.79174 0.78511 0.76152 1.17684 1.22034 1.18435 1.21448 0.91969 0.79951 0.83253 1.90565 1.72043 1.58121 1.32555 1.21155 0.90697 1.06790 0.94674 1.29920 1.07139 1.18848 1.06590 0.84127 1.22226 0.86354 1.05850 1.00317 1.22397 1.03654 0.90520 0.98958 1.30535 1.17381 1.08495 1.13420 1.10440 0.81236 0.79704 0.75985 1.93544 1.78621 1.60577 1.66051 1.93472 1.73075 1.84352 1.48069 0.84160 0.92051 0.92352 0.87798 0.85810 0.88315 0.95768 0.91959 0.84754 0.87920 0.85838 0.87612 0.88650 0.84453 0.82374 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.55 113.37 1.20 1.83 16 2 O -0.36 -11.85 10.57 -51.49 -0.54 -12.39 16 3 C 0.47 19.24 7.96 71.24 0.57 19.81 16 4 O -0.54 -25.54 15.73 21.99 0.35 -25.20 16 5 C -0.11 -4.72 6.11 29.85 0.18 -4.54 16 6 C 0.13 6.64 4.21 86.38 0.36 7.00 16 7 N -0.44 -22.51 2.55 -635.55 -1.62 -24.13 16 8 C -0.36 -17.42 8.70 84.04 0.73 -16.69 16 9 H 0.12 5.03 6.98 -2.91 -0.02 5.01 16 10 C 0.00 -0.21 4.94 84.93 0.42 0.21 16 11 N -0.89 -49.84 11.31 21.67 0.24 -49.60 16 12 Si 0.99 37.76 29.60 68.60 2.03 39.79 16 13 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 14 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 16 C 0.44 21.62 6.98 87.66 0.61 22.23 16 17 O -0.64 -35.22 14.76 -3.07 -0.05 -35.26 16 18 C -0.09 -3.28 3.39 29.85 0.10 -3.18 16 19 C -0.51 -14.56 2.78 30.99 0.09 -14.48 16 20 H 0.14 4.11 7.91 -2.39 -0.02 4.09 16 21 C -0.11 -1.59 5.94 31.29 0.19 -1.40 16 22 C -0.12 -1.36 6.48 31.59 0.20 -1.15 16 23 C -0.56 -10.15 7.29 72.68 0.53 -9.62 16 24 S 2.34 82.72 4.96 -56.49 -0.28 82.44 16 25 O -0.99 -46.43 16.65 -127.49 -2.12 -48.55 16 26 O -0.99 -43.58 18.15 -127.49 -2.31 -45.89 16 27 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 29 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 31 H 0.12 4.65 8.14 -2.39 -0.02 4.63 16 32 H 0.10 5.62 5.29 -2.39 -0.01 5.60 16 33 H 0.02 1.42 7.52 -2.39 -0.02 1.40 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.13 3.74 7.65 -2.38 -0.02 3.72 16 36 H 0.10 3.71 7.69 -2.39 -0.02 3.69 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.22 7.86 -2.38 -0.02 1.21 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.14 0.64 8.14 -2.38 -0.02 0.63 16 41 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -89.14 361.54 1.90 -87.24 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 1.03 Total: 31.54 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.18 Total: 0.02 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.38 Total: -73.73 kcal Atomic # 8 Polarization: -162.61 SS G_CDS: -4.68 Total: -167.29 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 82.72 SS G_CDS: -0.28 Total: 82.44 kcal Total: -89.14 1.90 -87.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.566 kcal (2) G-P(sol) polarization free energy of solvation -89.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds