Wall clock time and date at job start Tue Mar 31 2020 17:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99630 * 2 1 4 4 O 1.20827 * 120.00432 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00010 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.45540 * 335.51827 * 5 3 2 7 7 C 1.52703 * 109.33856 * 215.77863 * 5 3 2 8 8 S 1.81667 * 108.99170 * 181.81954 * 7 5 3 9 9 O 1.42103 * 108.65063 * 301.10186 * 8 7 5 10 10 O 1.42101 * 108.65392 * 169.80575 * 8 7 5 11 11 C 1.81661 * 101.38800 * 55.45229 * 8 7 5 12 12 C 1.53179 * 108.95287 * 304.43914 * 11 8 7 13 13 N 1.46386 * 109.46202 * 95.49475 * 5 3 2 14 14 C 1.34776 * 119.70161 * 4.33265 * 13 5 3 15 15 O 1.21280 * 119.99683 * 354.01712 * 14 13 5 16 16 C 1.50697 * 120.00032 * 174.02593 * 14 13 5 17 17 C 1.52997 * 109.47148 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47208 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47324 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99658 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00205 * 179.97438 * 19 18 17 22 22 N 1.31524 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47093 * 89.99996 * 23 21 19 25 25 H 1.48498 * 109.46879 * 209.99687 * 23 21 19 26 26 H 1.48495 * 109.47172 * 329.99786 * 23 21 19 27 27 H 1.08999 * 109.46538 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47257 * 299.99604 * 1 2 3 29 29 H 1.09001 * 109.47113 * 60.00202 * 1 2 3 30 30 H 1.08999 * 109.62916 * 61.91005 * 7 5 3 31 31 H 1.09006 * 109.53602 * 301.66729 * 7 5 3 32 32 H 1.09005 * 109.55788 * 184.59417 * 11 8 7 33 33 H 1.09002 * 109.55931 * 64.28042 * 11 8 7 34 34 H 1.09009 * 109.46278 * 298.24777 * 12 11 8 35 35 H 1.08997 * 109.46403 * 178.26841 * 12 11 8 36 36 H 1.09007 * 109.46873 * 299.99300 * 16 14 13 37 37 H 1.08998 * 109.47851 * 59.99527 * 16 14 13 38 38 H 1.09008 * 109.47211 * 299.99054 * 17 16 14 39 39 H 1.08994 * 109.47524 * 59.99451 * 17 16 14 40 40 H 1.09007 * 109.46830 * 299.99143 * 18 17 16 41 41 H 1.08998 * 109.47833 * 59.99333 * 18 17 16 42 42 H 0.97000 * 119.99692 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9777 0.3601 0.4268 7 6 4.0097 2.4690 0.8429 8 16 5.8218 2.5873 0.7931 9 8 6.3703 1.3768 1.2963 10 8 6.2128 3.8237 1.3744 11 6 6.1272 2.6641 -0.9960 12 6 5.4817 1.4460 -1.6636 13 7 4.0470 1.4323 -1.3731 14 6 3.1608 1.5714 -2.3789 15 8 1.9732 1.4576 -2.1607 16 6 3.6454 1.8681 -3.7747 17 6 2.4463 1.9770 -4.7186 18 6 2.9384 2.2776 -6.1357 19 6 1.7572 2.3844 -7.0656 20 1 0.7558 2.2507 -6.6840 21 6 1.9551 2.6526 -8.4035 22 7 3.1747 2.8159 -8.8681 23 14 0.4911 2.7842 -9.5562 24 1 0.0196 4.1917 -9.5988 25 1 0.8947 2.3559 -10.9196 26 1 -0.6046 1.9096 -9.0666 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.6811 2.3325 1.8732 31 1 3.5732 3.3825 0.4387 32 1 7.2010 2.6568 -1.1835 33 1 5.6907 3.5767 -1.4019 34 1 5.9392 0.5351 -1.2773 35 1 5.6336 1.4996 -2.7416 36 1 4.1950 2.8094 -3.7760 37 1 4.3007 1.0644 -4.1104 38 1 1.8963 1.0359 -4.7175 39 1 1.7914 2.7810 -4.3828 40 1 3.4886 3.2186 -6.1373 41 1 3.5931 1.4734 -6.4713 42 1 3.3139 3.0043 -9.8094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347468574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:08 Heat of formation + Delta-G solvation = -179.954618 kcal Electronic energy + Delta-G solvation = -27817.129787 eV Core-core repulsion = 23697.502219 eV Total energy + Delta-G solvation = -4119.627568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -41.42785 -39.50830 -37.66241 -36.99970 -36.50971 -36.30812 -34.48897 -33.11503 -32.04026 -30.94182 -28.26917 -27.92437 -25.44556 -24.47606 -23.64916 -21.75403 -20.35608 -19.77574 -19.05644 -18.22226 -17.48435 -17.19786 -16.72717 -16.50668 -16.31844 -16.24352 -16.16437 -15.62590 -15.43344 -14.77207 -14.51461 -14.19996 -13.81707 -13.69348 -13.29611 -13.18893 -13.04144 -12.78170 -12.63443 -12.48147 -12.43946 -12.35140 -12.02120 -11.91537 -11.56735 -11.47368 -10.99296 -10.88620 -10.72998 -10.68201 -10.59817 -10.36536 -9.95698 -9.82505 -9.49751 -9.39753 -9.13563 -8.39270 -6.05057 -4.06769 -0.54408 1.82611 2.04940 2.31622 2.62113 2.71184 3.12931 3.30218 3.36447 3.40747 3.49793 3.65780 4.04406 4.21097 4.35771 4.43288 4.45914 4.58507 4.67056 4.75446 5.04220 5.13208 5.15505 5.23108 5.27767 5.31415 5.38764 5.43620 5.58963 5.74338 5.97900 6.44861 6.54696 6.71036 6.77892 7.01022 7.59987 7.71307 7.74251 7.87827 7.94560 8.37693 8.99853 9.57835 11.06346 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003208 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.993571 B = 8727.345315 C =10174.003254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.357 6.357 3 C 0.490 3.510 4 O -0.499 6.499 5 C 0.165 3.835 6 H 0.126 0.874 7 C -0.620 4.620 8 S 2.428 3.572 9 O -0.928 6.928 10 O -0.930 6.930 11 C -0.626 4.626 12 C 0.119 3.881 13 N -0.628 5.628 14 C 0.516 3.484 15 O -0.490 6.490 16 C -0.135 4.135 17 C -0.097 4.097 18 C 0.022 3.978 19 C -0.520 4.520 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.897 5.897 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 -4.665 20.670 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.274 6.274 3 C 0.332 3.668 4 O -0.387 6.387 5 C 0.059 3.941 6 H 0.144 0.856 7 C -0.748 4.748 8 S 2.608 3.392 9 O -0.926 6.926 10 O -0.927 6.927 11 C -0.757 4.757 12 C -0.005 4.005 13 N -0.367 5.367 14 C 0.307 3.693 15 O -0.364 6.364 16 C -0.174 4.174 17 C -0.135 4.135 18 C -0.015 4.015 19 C -0.558 4.558 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.536 5.536 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.416 -4.385 21.321 22.693 hybrid contribution -1.395 0.345 -1.299 1.937 sum 5.021 -4.040 20.022 21.033 Atomic orbital electron populations 1.23181 0.75795 1.03184 1.02662 1.86361 1.23788 1.32676 1.84541 1.21982 0.89750 0.82393 0.72673 1.90658 1.65910 1.36186 1.45940 1.20056 0.91927 0.98362 0.83773 0.85633 1.30641 1.27368 1.07458 1.09363 1.07849 0.77434 0.75479 0.78388 1.93616 1.75185 1.46547 1.77211 1.93633 1.79856 1.44544 1.74693 1.30656 1.11773 1.08361 1.24879 1.21490 0.78093 0.96006 1.04875 1.48442 1.07590 1.75797 1.04874 1.21763 0.85850 0.74052 0.87656 1.90625 1.16491 1.48605 1.80681 1.21954 1.02687 1.03607 0.89150 1.21514 0.94285 1.01865 0.95866 1.19122 0.96702 0.96838 0.88882 1.21234 0.93264 1.48190 0.93131 0.92599 1.25006 0.95726 0.95323 0.98336 1.69955 1.20045 1.49113 1.14524 0.86587 0.82899 0.78396 0.80110 1.20648 1.21208 1.19836 0.88497 0.92460 0.91196 0.83131 0.82920 0.82739 0.83725 0.87861 0.85626 0.88559 0.88438 0.92474 0.92485 0.96548 0.96490 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.56 101.05 1.07 1.59 16 2 O -0.36 -4.82 10.29 -45.59 -0.47 -5.29 16 3 C 0.49 6.83 4.15 36.01 0.15 6.97 16 4 O -0.50 -8.42 14.79 -26.56 -0.39 -8.81 16 5 C 0.16 1.64 3.17 -69.29 -0.22 1.42 16 6 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.62 -4.83 5.50 37.01 0.20 -4.62 16 8 S 2.43 17.36 5.29 -107.50 -0.57 16.79 16 9 O -0.93 -8.72 18.02 -57.81 -1.04 -9.76 16 10 O -0.93 -9.95 18.10 -57.81 -1.05 -11.00 16 11 C -0.63 -3.08 6.55 37.25 0.24 -2.83 16 12 C 0.12 0.73 6.10 -4.01 -0.02 0.70 16 13 N -0.63 -6.28 2.81 -167.67 -0.47 -6.75 16 14 C 0.52 7.24 7.58 -10.99 -0.08 7.16 16 15 O -0.49 -8.77 11.66 -24.98 -0.29 -9.06 16 16 C -0.13 -1.90 4.05 -27.89 -0.11 -2.01 16 17 C -0.10 -1.93 4.44 -26.73 -0.12 -2.05 16 18 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 23 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.15 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.15 1.27 7.79 -51.92 -0.40 0.86 16 32 H 0.15 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.13 0.66 5.76 -51.93 -0.30 0.36 16 36 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.10 1.16 7.44 -51.93 -0.39 0.77 16 38 H 0.06 1.19 8.10 -51.92 -0.42 0.76 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -39.66 359.47 -8.71 -48.37 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -6.12 Total: -4.28 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 0.56 Total: -6.62 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.27 Total: -32.27 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -3.24 Total: -43.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 17.36 SS G_CDS: -0.57 Total: 16.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.66 -8.71 -48.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347468574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.581 kcal (2) G-P(sol) polarization free energy of solvation -39.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds