Wall clock time and date at job start Tue Mar 31 2020 17:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99630 * 2 1 4 4 O 1.20827 * 120.00432 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00010 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.45540 * 335.51827 * 5 3 2 7 7 C 1.52703 * 109.33856 * 215.77863 * 5 3 2 8 8 S 1.81667 * 108.99170 * 181.81954 * 7 5 3 9 9 O 1.42103 * 108.65063 * 301.10186 * 8 7 5 10 10 O 1.42101 * 108.65392 * 169.80575 * 8 7 5 11 11 C 1.81661 * 101.38800 * 55.45229 * 8 7 5 12 12 C 1.53179 * 108.95287 * 304.43914 * 11 8 7 13 13 N 1.46386 * 109.46202 * 95.49475 * 5 3 2 14 14 C 1.34776 * 119.70161 * 4.33265 * 13 5 3 15 15 O 1.21280 * 119.99683 * 354.01712 * 14 13 5 16 16 C 1.50697 * 120.00032 * 174.02593 * 14 13 5 17 17 C 1.52997 * 109.47148 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47208 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47324 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99658 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00205 * 179.97438 * 19 18 17 22 22 N 1.31524 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47093 * 89.99996 * 23 21 19 25 25 H 1.48498 * 109.46879 * 209.99687 * 23 21 19 26 26 H 1.48495 * 109.47172 * 329.99786 * 23 21 19 27 27 H 1.08999 * 109.46538 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47257 * 299.99604 * 1 2 3 29 29 H 1.09001 * 109.47113 * 60.00202 * 1 2 3 30 30 H 1.08999 * 109.62916 * 61.91005 * 7 5 3 31 31 H 1.09006 * 109.53602 * 301.66729 * 7 5 3 32 32 H 1.09005 * 109.55788 * 184.59417 * 11 8 7 33 33 H 1.09002 * 109.55931 * 64.28042 * 11 8 7 34 34 H 1.09009 * 109.46278 * 298.24777 * 12 11 8 35 35 H 1.08997 * 109.46403 * 178.26841 * 12 11 8 36 36 H 1.09007 * 109.46873 * 299.99300 * 16 14 13 37 37 H 1.08998 * 109.47851 * 59.99527 * 16 14 13 38 38 H 1.09008 * 109.47211 * 299.99054 * 17 16 14 39 39 H 1.08994 * 109.47524 * 59.99451 * 17 16 14 40 40 H 1.09007 * 109.46830 * 299.99143 * 18 17 16 41 41 H 1.08998 * 109.47833 * 59.99333 * 18 17 16 42 42 H 0.97000 * 119.99692 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9777 0.3601 0.4268 7 6 4.0097 2.4690 0.8429 8 16 5.8218 2.5873 0.7931 9 8 6.3703 1.3768 1.2963 10 8 6.2128 3.8237 1.3744 11 6 6.1272 2.6641 -0.9960 12 6 5.4817 1.4460 -1.6636 13 7 4.0470 1.4323 -1.3731 14 6 3.1608 1.5714 -2.3789 15 8 1.9732 1.4576 -2.1607 16 6 3.6454 1.8681 -3.7747 17 6 2.4463 1.9770 -4.7186 18 6 2.9384 2.2776 -6.1357 19 6 1.7572 2.3844 -7.0656 20 1 0.7558 2.2507 -6.6840 21 6 1.9551 2.6526 -8.4035 22 7 3.1747 2.8159 -8.8681 23 14 0.4911 2.7842 -9.5562 24 1 0.0196 4.1917 -9.5988 25 1 0.8947 2.3559 -10.9196 26 1 -0.6046 1.9096 -9.0666 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.6811 2.3325 1.8732 31 1 3.5732 3.3825 0.4387 32 1 7.2010 2.6568 -1.1835 33 1 5.6907 3.5767 -1.4019 34 1 5.9392 0.5351 -1.2773 35 1 5.6336 1.4996 -2.7416 36 1 4.1950 2.8094 -3.7760 37 1 4.3007 1.0644 -4.1104 38 1 1.8963 1.0359 -4.7175 39 1 1.7914 2.7810 -4.3828 40 1 3.4886 3.2186 -6.1373 41 1 3.5931 1.4734 -6.4713 42 1 3.3139 3.0043 -9.8094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347468574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:02 Heat of formation + Delta-G solvation = -209.155674 kcal Electronic energy + Delta-G solvation = -27818.396039 eV Core-core repulsion = 23697.502219 eV Total energy + Delta-G solvation = -4120.893821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.63 seconds Orbital eigenvalues (eV) -42.40124 -40.55034 -38.43309 -37.84915 -37.33877 -37.17951 -36.20012 -34.32613 -33.45296 -31.71363 -29.72243 -28.98230 -26.52064 -25.63514 -24.66955 -22.99306 -21.76170 -20.75497 -19.79501 -19.17378 -18.54086 -18.24217 -18.05391 -17.38956 -17.28725 -17.06177 -16.98088 -16.68582 -16.45988 -16.28268 -15.71751 -15.25810 -14.79348 -14.53594 -14.38703 -14.16408 -14.10258 -13.79171 -13.73579 -13.52554 -13.30599 -13.17079 -13.12527 -13.00572 -12.85574 -12.65256 -12.52639 -12.42397 -12.16560 -11.75555 -11.65030 -11.56357 -11.47445 -11.32853 -11.19089 -10.89426 -10.53840 -10.28195 -8.20811 -6.29632 -1.10855 0.92769 1.28909 1.39268 1.39576 1.44085 1.50769 1.75892 1.82732 2.40871 2.57725 2.84398 3.06354 3.12868 3.39234 3.56047 3.69666 3.78037 3.94061 4.04095 4.11275 4.16043 4.22978 4.26953 4.35155 4.56875 4.62239 4.66429 4.79273 4.85290 4.93582 5.01398 5.07645 5.19856 5.45694 5.53828 5.76335 5.81621 5.89479 6.28450 6.71723 6.84959 6.86636 7.38963 8.90271 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003208 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.993571 B = 8727.345315 C =10174.003254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.364 6.364 3 C 0.482 3.518 4 O -0.538 6.538 5 C 0.161 3.839 6 H 0.157 0.843 7 C -0.623 4.623 8 S 2.450 3.550 9 O -0.949 6.949 10 O -0.968 6.968 11 C -0.610 4.610 12 C 0.104 3.896 13 N -0.617 5.617 14 C 0.515 3.485 15 O -0.538 6.538 16 C -0.126 4.126 17 C -0.084 4.084 18 C 0.028 3.972 19 C -0.548 4.548 20 H 0.047 0.953 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.955 3.045 24 H -0.274 1.274 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.190 0.810 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.004 0.996 41 H 0.007 0.993 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -5.327 20.787 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.280 6.280 3 C 0.326 3.674 4 O -0.428 6.428 5 C 0.056 3.944 6 H 0.174 0.826 7 C -0.750 4.750 8 S 2.633 3.367 9 O -0.946 6.946 10 O -0.965 6.965 11 C -0.743 4.743 12 C -0.017 4.017 13 N -0.354 5.354 14 C 0.306 3.694 15 O -0.416 6.416 16 C -0.165 4.165 17 C -0.122 4.122 18 C -0.010 4.010 19 C -0.586 4.586 20 H 0.065 0.935 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.780 3.220 24 H -0.200 1.200 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.147 0.853 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.183 0.817 31 H 0.163 0.837 32 H 0.208 0.792 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.026 0.974 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.051 -5.060 21.493 23.502 hybrid contribution -1.889 0.528 -1.347 2.379 sum 6.162 -4.532 20.146 21.549 Atomic orbital electron populations 1.23324 0.75198 1.04973 1.01647 1.86359 1.24610 1.32771 1.84251 1.22798 0.91406 0.81847 0.71303 1.90627 1.67210 1.37305 1.47626 1.20326 0.89311 1.00684 0.84057 0.82566 1.30706 1.28208 1.06209 1.09891 1.07142 0.76191 0.73991 0.79355 1.93584 1.75263 1.47069 1.78687 1.93588 1.80220 1.46044 1.76655 1.30578 1.14073 1.08439 1.21181 1.21995 0.75559 0.97837 1.06345 1.48380 1.08770 1.74222 1.04031 1.21633 0.85564 0.73876 0.88327 1.90627 1.18573 1.50948 1.81462 1.21804 1.00404 1.06153 0.88185 1.21184 0.96219 1.00027 0.94791 1.19003 0.95296 0.95698 0.90958 1.21679 0.94086 1.48454 0.94401 0.93488 1.25805 0.98485 0.94874 0.99911 1.70041 1.21790 1.49650 1.15093 0.85596 0.79604 0.78585 0.78176 1.19977 1.20249 1.19484 0.85332 0.91648 0.94031 0.81733 0.83710 0.79243 0.82670 0.84936 0.83945 0.86089 0.85495 0.94070 0.94667 0.97776 0.97422 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.56 113.37 1.20 2.18 16 2 O -0.36 -9.78 10.29 -45.36 -0.47 -10.25 16 3 C 0.48 13.41 4.15 71.24 0.30 13.71 16 4 O -0.54 -18.71 14.79 29.43 0.44 -18.28 16 5 C 0.16 2.93 3.17 44.17 0.14 3.07 16 6 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.62 -8.85 5.50 71.88 0.40 -8.45 16 8 S 2.45 29.24 5.29 -56.49 -0.30 28.94 16 9 O -0.95 -15.28 18.02 -127.39 -2.30 -17.57 16 10 O -0.97 -19.34 18.10 -127.39 -2.31 -21.65 16 11 C -0.61 -3.47 6.55 72.04 0.47 -3.00 16 12 C 0.10 0.82 6.10 86.46 0.53 1.35 16 13 N -0.62 -10.79 2.81 -802.76 -2.26 -13.04 16 14 C 0.51 13.84 7.58 87.66 0.66 14.50 16 15 O -0.54 -19.60 11.66 26.17 0.31 -19.29 16 16 C -0.13 -3.34 4.05 29.85 0.12 -3.22 16 17 C -0.08 -3.38 4.44 30.59 0.14 -3.24 16 18 C 0.03 1.36 4.97 29.85 0.15 1.51 16 19 C -0.55 -31.13 9.11 25.60 0.23 -30.90 16 20 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 23 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.16 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.14 2.34 7.79 -2.38 -0.02 2.32 16 32 H 0.19 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.14 0.77 5.76 -2.39 -0.01 0.76 16 36 H 0.12 2.61 8.07 -2.38 -0.02 2.59 16 37 H 0.13 2.61 7.44 -2.39 -0.02 2.59 16 38 H 0.04 1.75 8.10 -2.38 -0.02 1.73 16 39 H 0.03 1.53 8.10 -2.39 -0.02 1.51 16 40 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -88.86 359.47 1.25 -87.61 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.03 Total: 2.81 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.79 Total: -11.60 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.97 Total: -66.94 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: -4.33 Total: -87.04 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 29.24 SS G_CDS: -0.30 Total: 28.94 kcal Total: -88.86 1.25 -87.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347468574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.542 kcal (2) G-P(sol) polarization free energy of solvation -88.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.63 seconds