Wall clock time and date at job start Tue Mar 31 2020 17:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42102 * 108.57484 * 2 1 4 4 O 1.42096 * 108.57783 * 228.97285 * 2 1 3 5 5 C 1.81401 * 101.91894 * 114.48192 * 2 1 3 6 6 C 1.53001 * 109.46788 * 174.29385 * 5 2 1 7 7 C 1.50697 * 112.99858 * 66.46312 * 6 5 2 8 8 O 1.21278 * 120.00366 * 5.93458 * 7 6 5 9 9 N 1.34778 * 119.99809 * 185.93751 * 7 6 5 10 10 C 1.47018 * 125.65072 * 359.68491 * 9 7 6 11 11 C 1.54329 * 107.26877 * 178.85402 * 10 9 7 12 12 C 1.55153 * 103.01956 * 338.14036 * 11 10 9 13 13 O 1.42899 * 111.00688 * 277.23060 * 12 11 10 14 14 C 1.50701 * 111.03812 * 153.39790 * 12 11 10 15 15 H 1.08000 * 120.00031 * 247.78732 * 14 12 11 16 16 C 1.37878 * 120.00312 * 67.78140 * 14 12 11 17 17 N 1.31510 * 119.99894 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00003 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47159 * 90.00724 * 18 16 14 20 20 H 1.48500 * 109.47202 * 210.00072 * 18 16 14 21 21 H 1.48499 * 109.47344 * 330.00344 * 18 16 14 22 22 C 1.47428 * 125.64765 * 179.97438 * 9 7 6 23 23 C 1.54035 * 113.81668 * 294.63024 * 6 5 2 24 24 O 1.44443 * 85.42413 * 223.23956 * 23 6 5 25 25 C 1.44168 * 93.38250 * 24.09074 * 24 23 6 26 26 H 1.08992 * 109.47384 * 305.51912 * 1 2 3 27 27 H 1.09004 * 109.46841 * 65.51849 * 1 2 3 28 28 H 1.08993 * 109.47011 * 185.51344 * 1 2 3 29 29 H 1.08997 * 109.47354 * 294.29697 * 5 2 1 30 30 H 1.08997 * 109.46748 * 54.29520 * 5 2 1 31 31 H 1.09003 * 109.88694 * 298.40255 * 10 9 7 32 32 H 1.09005 * 109.88042 * 59.56379 * 10 9 7 33 33 H 1.09002 * 110.85017 * 219.67337 * 11 10 9 34 34 H 1.09002 * 110.51821 * 96.45383 * 11 10 9 35 35 H 0.96700 * 114.00411 * 292.19860 * 13 12 11 36 36 H 0.96995 * 120.00275 * 179.97438 * 17 16 14 37 37 H 1.09000 * 110.36354 * 322.92647 * 22 9 7 38 38 H 1.08994 * 110.36762 * 85.14138 * 22 9 7 39 39 H 1.08999 * 113.86585 * 337.34884 * 23 6 5 40 40 H 1.09006 * 113.85982 * 109.05178 * 23 6 5 41 41 H 1.09004 * 113.87024 * 221.76741 * 25 24 23 42 42 H 1.09002 * 113.98792 * 90.07327 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.6985 -0.9500 1.7402 7 6 4.4751 0.3408 1.7816 8 8 3.8876 1.4009 1.8262 9 7 5.8226 0.3172 1.7692 10 6 6.6580 -0.8917 1.7235 11 6 8.1304 -0.4302 1.6959 12 6 8.0310 1.0243 1.1650 13 8 7.9475 1.0443 -0.2614 14 6 9.1912 1.8566 1.6468 15 1 9.0246 2.6603 2.3488 16 6 10.4656 1.5920 1.1917 17 7 10.6685 0.6137 0.3367 18 14 11.9037 2.6233 1.7896 19 1 12.4802 2.0074 3.0117 20 1 12.9422 2.6861 0.7300 21 1 11.4321 3.9962 2.1025 22 6 6.7030 1.4992 1.8052 23 6 4.2638 -1.9846 0.7489 24 8 5.0266 -2.4738 1.8737 25 6 4.0956 -1.9505 2.8420 26 1 -0.3634 0.5970 0.8364 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0228 0.0987 29 1 1.8500 -0.0667 2.4065 30 1 1.6769 -1.6936 1.7057 31 1 6.4754 -1.5023 2.6078 32 1 6.4337 -1.4635 0.8230 33 1 8.7183 -1.0489 1.0178 34 1 8.5547 -0.4461 2.6998 35 1 8.7555 0.7550 -0.7069 36 1 11.5649 0.4278 0.0162 37 1 6.2703 2.3123 1.2224 38 1 6.8689 1.8174 2.8343 39 1 3.5217 -2.6916 0.3783 40 1 4.8733 -1.5492 -0.0431 41 1 4.5717 -1.4881 3.7067 42 1 3.3011 -2.6456 3.1136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362596483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:29 Heat of formation + Delta-G solvation = -155.251189 kcal Electronic energy + Delta-G solvation = -29054.077651 eV Core-core repulsion = 24935.521304 eV Total energy + Delta-G solvation = -4118.556347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.72285 -40.03155 -38.94547 -37.85980 -36.88674 -36.10323 -34.15751 -33.59928 -31.59236 -30.41980 -30.06532 -27.82602 -27.72757 -26.75510 -24.48265 -22.89959 -21.49540 -20.11117 -19.66123 -19.15028 -18.19257 -17.90200 -17.60092 -17.13137 -16.92466 -16.70439 -16.55396 -16.45775 -16.15112 -15.99862 -15.61286 -15.12747 -14.74985 -14.06621 -14.02304 -13.95263 -13.87857 -13.77227 -13.48326 -13.43470 -13.17338 -12.95632 -12.94376 -12.87581 -12.79639 -12.55959 -12.45124 -12.29265 -12.00569 -11.87728 -11.73907 -11.32557 -11.21391 -10.99932 -10.66490 -10.54759 -10.07142 -9.53656 -8.25679 -6.41213 -0.90436 1.35435 1.41429 1.44028 1.53778 1.86485 1.96653 2.38784 2.41689 2.72041 2.98320 3.08197 3.16005 3.24585 3.51210 3.81122 3.94119 4.06825 4.10949 4.16634 4.27370 4.31210 4.35965 4.40175 4.51584 4.59150 4.62033 4.67410 4.76929 4.86165 4.96135 5.00045 5.07288 5.20798 5.26953 5.43821 5.51388 5.76078 6.03716 6.56208 6.63182 7.02632 7.29967 7.43150 8.80999 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.003722 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.280890 B = 7520.526165 C = 7936.201094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.381 3.619 3 O -0.977 6.977 4 O -0.978 6.978 5 C -0.579 4.579 6 C -0.150 4.150 7 C 0.508 3.492 8 O -0.548 6.548 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.136 4.136 12 C 0.233 3.767 13 O -0.598 6.598 14 C -0.563 4.563 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.911 5.911 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.124 3.876 23 C 0.043 3.957 24 O -0.381 6.381 25 C 0.074 3.926 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.201 0.799 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.381 0.619 36 H 0.273 0.727 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -11.073 5.461 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.569 3.431 3 O -0.974 6.974 4 O -0.976 6.976 5 C -0.709 4.709 6 C -0.154 4.154 7 C 0.296 3.704 8 O -0.426 6.426 9 N -0.336 5.336 10 C -0.004 4.004 11 C -0.174 4.174 12 C 0.193 3.807 13 O -0.408 6.408 14 C -0.601 4.601 15 H 0.076 0.924 16 C -0.167 4.167 17 N -0.551 5.551 18 Si 0.791 3.209 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.200 1.200 22 C 0.001 3.999 23 C -0.034 4.034 24 O -0.300 6.300 25 C -0.003 4.003 26 H 0.169 0.831 27 H 0.151 0.849 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.218 0.782 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.654 -10.222 4.853 23.551 hybrid contribution 1.226 0.747 0.292 1.465 sum -19.428 -9.475 5.145 22.220 Atomic orbital electron populations 1.30056 1.20591 1.14424 1.13154 1.08514 0.81104 0.75165 0.78268 1.93665 1.80618 1.36482 1.86658 1.93543 1.81211 1.67420 1.55388 1.30129 0.99535 1.17609 1.23599 1.23638 0.94032 0.94407 1.03324 1.20264 0.81330 0.91004 0.77832 1.90810 1.68569 1.32733 1.50480 1.48569 1.04806 1.09473 1.70775 1.22692 0.89277 0.85400 1.03056 1.23120 0.94519 0.98705 1.01099 1.19806 0.90181 0.92077 0.78659 1.86099 1.42879 1.90754 1.21102 1.21712 0.92738 1.17671 1.27975 0.92393 1.25673 1.01009 0.95681 0.94327 1.69640 1.23484 1.30188 1.31775 0.85442 0.78365 0.78893 0.78202 1.19473 1.20550 1.20041 1.22180 0.90015 0.87999 0.99676 1.24394 0.95240 0.93490 0.90281 1.89986 1.41697 1.81301 1.17030 1.24227 0.93131 0.91513 0.91478 0.83073 0.84900 0.81573 0.82038 0.78203 0.88160 0.91389 0.91579 0.91771 0.76784 0.91780 0.93979 0.90451 0.84126 0.90798 0.88551 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -5.07 10.62 113.37 1.20 -3.86 16 2 S 2.38 51.90 5.15 -56.49 -0.29 51.61 16 3 O -0.98 -35.67 15.40 -118.88 -1.83 -37.50 16 4 O -0.98 -26.84 16.53 -127.37 -2.11 -28.95 16 5 C -0.58 -8.30 4.85 71.98 0.35 -7.95 16 6 C -0.15 -3.65 0.96 -52.23 -0.05 -3.70 16 7 C 0.51 19.39 6.80 87.66 0.60 19.98 16 8 O -0.55 -24.39 13.88 18.69 0.26 -24.13 16 9 N -0.60 -25.38 3.32 -811.83 -2.70 -28.08 16 10 C 0.12 4.51 4.69 86.73 0.41 4.91 16 11 C -0.14 -6.20 5.64 31.78 0.18 -6.02 16 12 C 0.23 12.13 0.89 -10.16 -0.01 12.12 16 13 O -0.60 -33.73 13.18 -148.98 -1.96 -35.70 16 14 C -0.56 -30.86 8.25 25.60 0.21 -30.64 16 15 H 0.06 3.16 7.77 -2.91 -0.02 3.14 16 16 C 0.03 1.79 5.30 84.66 0.45 2.24 16 17 N -0.91 -48.68 10.79 21.45 0.23 -48.45 16 18 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.12 6.05 6.08 86.85 0.53 6.58 16 23 C 0.04 1.06 5.95 72.30 0.43 1.49 16 24 O -0.38 -9.35 8.13 -148.98 -1.21 -10.56 16 25 C 0.07 1.28 7.65 72.30 0.55 1.84 16 26 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.17 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.16 1.91 8.00 -2.39 -0.02 1.89 16 30 H 0.20 0.23 8.05 -2.39 -0.02 0.21 16 31 H 0.10 3.29 5.69 -2.39 -0.01 3.28 16 32 H 0.07 2.62 5.11 -2.38 -0.01 2.61 16 33 H 0.07 3.19 7.85 -2.39 -0.02 3.17 16 34 H 0.06 2.88 8.03 -2.39 -0.02 2.86 16 35 H 0.38 21.51 6.93 -74.06 -0.51 21.00 16 36 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.04 2.26 8.04 -2.39 -0.02 2.24 16 38 H 0.08 3.59 8.02 -2.39 -0.02 3.57 16 39 H 0.14 2.37 7.89 -2.39 -0.02 2.35 16 40 H 0.07 2.39 6.82 -2.38 -0.02 2.38 16 41 H 0.10 1.76 7.85 -2.38 -0.02 1.74 16 42 H 0.15 1.02 8.04 -2.39 -0.02 1.00 16 Total: -1.00 -85.40 341.72 -2.19 -87.59 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.54 Total: 32.83 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.85 Total: -3.01 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.47 Total: -76.53 kcal Atomic # 8 Polarization: -129.99 SS G_CDS: -6.85 Total: -136.84 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.29 Total: 51.61 kcal Total: -85.40 -2.19 -87.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362596483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.658 kcal (2) G-P(sol) polarization free energy of solvation -85.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds