Wall clock time and date at job start Tue Mar 31 2020 17:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42102 * 108.58150 * 2 1 4 4 O 1.42103 * 108.57751 * 228.97065 * 2 1 3 5 5 C 1.81409 * 101.92154 * 114.48730 * 2 1 3 6 6 C 1.52997 * 109.47126 * 174.56480 * 5 2 1 7 7 C 1.50704 * 112.99756 * 53.78166 * 6 5 2 8 8 O 1.21276 * 120.00466 * 245.45775 * 7 6 5 9 9 N 1.34783 * 119.99893 * 65.46156 * 7 6 5 10 10 C 1.47433 * 125.64717 * 354.57967 * 9 7 6 11 11 C 1.55127 * 104.71857 * 155.82341 * 10 9 7 12 12 C 1.55158 * 101.49030 * 37.29251 * 11 10 9 13 13 O 1.42901 * 110.71338 * 82.69555 * 12 11 10 14 14 C 1.50690 * 110.72121 * 205.96992 * 12 11 10 15 15 H 1.07996 * 120.00515 * 113.52748 * 14 12 11 16 16 C 1.37884 * 120.00128 * 293.52255 * 14 12 11 17 17 N 1.31521 * 119.99819 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00223 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47022 * 89.99964 * 18 16 14 20 20 H 1.48498 * 109.47314 * 210.00066 * 18 16 14 21 21 H 1.48499 * 109.47115 * 330.00320 * 18 16 14 22 22 C 1.47019 * 125.64857 * 174.89316 * 9 7 6 23 23 C 1.54034 * 113.82015 * 281.79656 * 6 5 2 24 24 O 1.44178 * 85.51466 * 223.19671 * 23 6 5 25 25 C 1.44174 * 93.34196 * 24.19361 * 24 23 6 26 26 H 1.08995 * 109.47109 * 65.51330 * 1 2 3 27 27 H 1.09004 * 109.47580 * 185.51140 * 1 2 3 28 28 H 1.09001 * 109.47196 * 305.51097 * 1 2 3 29 29 H 1.09000 * 109.46863 * 294.56775 * 5 2 1 30 30 H 1.09003 * 109.47000 * 54.56385 * 5 2 1 31 31 H 1.09001 * 110.36207 * 274.75313 * 10 9 7 32 32 H 1.09000 * 110.36677 * 37.07038 * 10 9 7 33 33 H 1.08999 * 111.19111 * 279.18978 * 11 10 9 34 34 H 1.08999 * 110.93479 * 155.29275 * 11 10 9 35 35 H 0.96701 * 114.00646 * 66.48401 * 13 12 11 36 36 H 0.96996 * 119.99920 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.88379 * 300.43519 * 22 9 7 38 38 H 1.09004 * 109.88153 * 61.44697 * 22 9 7 39 39 H 1.08993 * 113.85876 * 337.34298 * 23 6 5 40 40 H 1.08998 * 113.86542 * 109.04605 * 23 6 5 41 41 H 1.09001 * 113.85908 * 221.65822 * 25 24 23 42 42 H 1.08994 * 113.86710 * 89.95709 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.6990 -0.9439 1.7428 7 6 4.4905 0.3121 1.4838 8 8 5.2274 0.3773 0.5228 9 7 4.3794 1.3632 2.3203 10 6 3.4435 1.4630 3.4550 11 6 4.0997 2.4868 4.4182 12 6 4.7151 3.5013 3.4185 13 8 3.7313 4.4418 2.9830 14 6 5.8949 4.2080 4.0344 15 1 6.8875 4.0450 3.6414 16 6 5.7071 5.0631 5.0997 17 7 4.4984 5.2614 5.5786 18 14 7.1695 5.9397 5.8628 19 1 7.3803 7.2398 5.1768 20 1 6.9067 6.1778 7.3048 21 1 8.3841 5.0985 5.7132 22 6 5.1670 2.6025 2.2482 23 6 4.2227 -2.1794 0.9865 24 8 5.0141 -2.4256 2.1663 25 6 4.1180 -1.6902 3.0235 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 -0.3633 0.5969 0.8365 29 1 1.8457 -0.0690 2.4065 30 1 1.6807 -1.6961 1.7038 31 1 2.4733 1.8258 3.1157 32 1 3.3373 0.4954 3.9454 33 1 4.8742 2.0169 5.0245 34 1 3.3497 2.9649 5.0483 35 1 3.4140 5.0309 3.6812 36 1 4.3662 5.8631 6.3278 37 1 6.2282 2.3735 2.3451 38 1 4.9815 3.1050 1.2988 39 1 3.4620 -2.9372 0.7997 40 1 4.8126 -1.9379 0.1023 41 1 4.6250 -1.0607 3.7549 42 1 3.3254 -2.2987 3.4587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362596532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:34 Heat of formation + Delta-G solvation = -176.206999 kcal Electronic energy + Delta-G solvation = -29074.077926 eV Core-core repulsion = 24954.612868 eV Total energy + Delta-G solvation = -4119.465059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -42.50248 -40.32276 -38.80724 -37.99281 -36.99722 -36.24786 -34.15829 -33.94903 -31.42193 -30.46173 -30.08813 -27.83247 -27.47066 -27.03937 -24.70912 -22.76288 -21.42018 -20.04966 -19.87978 -19.16972 -18.43437 -17.87541 -17.62621 -17.25543 -17.02953 -16.90142 -16.61540 -16.41901 -16.34663 -15.97600 -15.49807 -15.07894 -14.81852 -14.28330 -14.03992 -13.91664 -13.90182 -13.88452 -13.53633 -13.37373 -13.22045 -13.14462 -13.07525 -12.99400 -12.83170 -12.68332 -12.45319 -12.27991 -12.03505 -11.98337 -11.91030 -11.34220 -11.27968 -11.18962 -10.74339 -10.61000 -10.14479 -9.69432 -8.26932 -6.40507 -1.02202 1.29402 1.40657 1.44250 1.52491 1.75933 1.81966 2.38670 2.51645 2.60558 2.84950 2.98589 3.09526 3.21225 3.38885 3.82880 3.94003 3.95162 4.07750 4.10756 4.20929 4.27142 4.30327 4.36094 4.42614 4.51518 4.60587 4.61975 4.73944 4.85726 4.87474 4.94417 5.05244 5.14499 5.18432 5.44210 5.51876 5.75334 6.04880 6.48076 6.62140 6.93805 7.30406 7.47364 8.79766 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.004120 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.821217 B = 6794.502247 C = 7474.892610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.370 3.630 3 O -0.985 6.985 4 O -0.974 6.974 5 C -0.600 4.600 6 C -0.147 4.147 7 C 0.521 3.479 8 O -0.582 6.582 9 N -0.592 5.592 10 C 0.091 3.909 11 C -0.127 4.127 12 C 0.238 3.762 13 O -0.594 6.594 14 C -0.566 4.566 15 H 0.048 0.952 16 C 0.041 3.959 17 N -0.905 5.905 18 Si 0.959 3.041 19 H -0.280 1.280 20 H -0.272 1.272 21 H -0.276 1.276 22 C 0.127 3.873 23 C 0.058 3.942 24 O -0.401 6.401 25 C 0.070 3.930 26 H 0.133 0.867 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.213 0.787 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.382 0.618 36 H 0.274 0.726 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -16.278 -0.222 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.559 3.441 3 O -0.982 6.982 4 O -0.971 6.971 5 C -0.730 4.730 6 C -0.151 4.151 7 C 0.309 3.691 8 O -0.463 6.463 9 N -0.323 5.323 10 C -0.030 4.030 11 C -0.166 4.166 12 C 0.197 3.803 13 O -0.404 6.404 14 C -0.604 4.604 15 H 0.066 0.934 16 C -0.160 4.160 17 N -0.544 5.544 18 Si 0.785 3.215 19 H -0.206 1.206 20 H -0.197 1.197 21 H -0.201 1.201 22 C 0.004 3.996 23 C -0.018 4.018 24 O -0.320 6.320 25 C -0.007 4.007 26 H 0.152 0.848 27 H 0.189 0.811 28 H 0.174 0.826 29 H 0.188 0.812 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.163 0.837 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.730 -16.320 -1.828 21.405 hybrid contribution 0.629 1.462 0.996 1.878 sum -13.101 -14.857 -0.832 19.826 Atomic orbital electron populations 1.30054 1.19606 1.14836 1.13509 1.08814 0.81525 0.75144 0.78613 1.93660 1.81139 1.36546 1.86871 1.93544 1.81187 1.67165 1.55208 1.30488 0.99724 1.19097 1.23647 1.23649 0.93880 0.93949 1.03650 1.20211 0.83143 0.84144 0.81634 1.90680 1.42111 1.83048 1.30423 1.48423 1.38278 1.15311 1.30256 1.22889 0.92719 1.01499 0.85900 1.23150 1.00104 0.96078 0.97223 1.19549 0.86772 0.86043 0.87898 1.86142 1.60443 1.51434 1.42344 1.21729 0.93830 1.28473 1.16337 0.93380 1.25530 0.98707 0.95894 0.95874 1.69608 1.21499 1.37024 1.26271 0.85552 0.79597 0.78579 0.77822 1.20609 1.19707 1.20137 1.21831 0.94283 0.84471 0.99024 1.24325 0.95020 0.92486 0.90011 1.89738 1.44658 1.77194 1.20408 1.24455 0.93714 0.91609 0.90948 0.84808 0.81142 0.82591 0.81209 0.76983 0.90086 0.86860 0.91695 0.89721 0.76617 0.91606 0.92571 0.94810 0.83662 0.90367 0.88962 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.96 10.62 113.37 1.20 -3.75 16 2 S 2.37 52.20 4.97 -56.49 -0.28 51.92 16 3 O -0.99 -35.65 16.83 -127.37 -2.14 -37.79 16 4 O -0.97 -27.89 17.44 -127.37 -2.22 -30.11 16 5 C -0.60 -8.00 5.03 71.98 0.36 -7.64 16 6 C -0.15 -3.63 0.35 -52.23 -0.02 -3.64 16 7 C 0.52 20.41 4.91 87.66 0.43 20.84 16 8 O -0.58 -28.69 16.30 -3.02 -0.05 -28.74 16 9 N -0.59 -23.83 3.33 -811.34 -2.70 -26.53 16 10 C 0.09 2.88 5.27 86.93 0.46 3.34 16 11 C -0.13 -5.12 5.68 32.06 0.18 -4.94 16 12 C 0.24 11.77 0.86 -10.35 -0.01 11.76 16 13 O -0.59 -31.06 13.09 -148.98 -1.95 -33.01 16 14 C -0.57 -30.37 8.21 25.60 0.21 -30.16 16 15 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 16 C 0.04 2.11 5.28 84.66 0.45 2.56 16 17 N -0.90 -45.16 10.70 21.45 0.23 -44.93 16 18 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.13 6.29 6.22 86.73 0.54 6.83 16 23 C 0.06 1.44 7.59 72.27 0.55 1.98 16 24 O -0.40 -10.97 12.40 -148.98 -1.85 -12.82 16 25 C 0.07 1.33 7.29 72.27 0.53 1.85 16 26 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.17 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.17 1.51 5.98 -2.39 -0.01 1.49 16 30 H 0.21 -0.10 8.05 -2.39 -0.02 -0.12 16 31 H 0.08 2.36 7.66 -2.39 -0.02 2.34 16 32 H 0.11 2.39 5.62 -2.39 -0.01 2.37 16 33 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 34 H 0.08 3.45 7.77 -2.39 -0.02 3.43 16 35 H 0.38 19.73 6.99 -74.06 -0.52 19.22 16 36 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 37 H 0.06 2.87 7.63 -2.39 -0.02 2.85 16 38 H 0.03 1.85 8.07 -2.38 -0.02 1.83 16 39 H 0.15 2.06 8.04 -2.39 -0.02 2.04 16 40 H 0.08 2.51 7.34 -2.39 -0.02 2.50 16 41 H 0.09 1.95 7.19 -2.39 -0.02 1.93 16 42 H 0.16 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -89.24 350.00 -3.51 -92.76 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.54 Total: 26.86 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 4.88 Total: -0.98 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -2.47 Total: -71.46 kcal Atomic # 8 Polarization: -134.26 SS G_CDS: -8.21 Total: -142.47 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.28 Total: 51.92 kcal Total: -89.24 -3.51 -92.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362596532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.450 kcal (2) G-P(sol) polarization free energy of solvation -89.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds