Wall clock time and date at job start Tue Mar 31 2020 16:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00019 * 2 1 4 4 O 1.20829 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00142 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.84683 * 48.80771 * 5 3 2 7 7 C 1.53780 * 113.61517 * 180.02562 * 5 3 2 8 8 C 1.53780 * 87.07758 * 139.98332 * 7 5 3 9 9 H 1.08996 * 113.61593 * 89.20575 * 8 7 5 10 10 S 1.81404 * 113.61046 * 220.01495 * 8 7 5 11 11 O 1.42106 * 110.54104 * 68.38296 * 10 8 7 12 12 O 1.42097 * 110.54670 * 291.62841 * 10 8 7 13 13 N 1.65603 * 104.44907 * 180.02562 * 10 8 7 14 14 C 1.47023 * 125.64955 * 269.96285 * 13 10 8 15 15 C 1.54320 * 107.27144 * 178.97314 * 14 13 10 16 16 C 1.55160 * 102.94354 * 337.81061 * 15 14 13 17 17 O 1.42902 * 111.03514 * 277.41058 * 16 15 14 18 18 C 1.50703 * 111.00343 * 153.57555 * 16 15 14 19 19 H 1.08000 * 119.99788 * 242.54625 * 18 16 15 20 20 C 1.37875 * 120.00108 * 62.55511 * 18 16 15 21 21 N 1.31507 * 120.00076 * 4.91626 * 20 18 16 22 22 Si 1.86796 * 119.99747 * 184.92320 * 20 18 16 23 23 H 1.48495 * 109.47421 * 94.99529 * 22 20 18 24 24 H 1.48498 * 109.46994 * 214.99581 * 22 20 18 25 25 H 1.48502 * 109.47138 * 334.99464 * 22 20 18 26 26 C 1.47425 * 125.64573 * 90.00331 * 13 10 8 27 27 C 1.53777 * 87.08367 * 334.56420 * 8 7 5 28 28 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47176 * 299.99328 * 1 2 3 30 30 H 1.08999 * 109.47502 * 59.99289 * 1 2 3 31 31 H 1.08997 * 113.61445 * 25.43613 * 7 5 3 32 32 H 1.09001 * 113.61178 * 254.53053 * 7 5 3 33 33 H 1.09004 * 109.88119 * 59.55779 * 14 13 10 34 34 H 1.09000 * 110.01116 * 298.46700 * 14 13 10 35 35 H 1.09001 * 110.72271 * 219.44342 * 15 14 13 36 36 H 1.09004 * 110.86881 * 96.24134 * 15 14 13 37 37 H 0.96700 * 113.99995 * 292.21943 * 17 16 15 38 38 H 0.97005 * 120.00125 * 180.02562 * 21 20 18 39 39 H 1.08995 * 110.36898 * 85.25641 * 26 13 10 40 40 H 1.08997 * 110.36681 * 322.92660 * 26 13 10 41 41 H 1.09003 * 113.61005 * 139.97981 * 27 8 7 42 42 H 1.08993 * 113.61800 * 270.88590 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0233 0.6366 -0.7568 7 6 4.1077 2.7142 0.0001 8 6 5.1814 2.2261 0.9869 9 1 6.0816 1.8492 0.5014 10 16 5.5400 3.4093 2.3143 11 8 4.4286 3.5256 3.1923 12 8 6.1858 4.5629 1.7932 13 7 6.7056 2.6664 3.2264 14 6 6.4605 1.7815 4.3746 15 6 7.8359 1.3075 4.8895 16 6 8.7547 1.5001 3.6542 17 8 8.6489 0.3917 2.7584 18 6 10.1858 1.7169 4.0739 19 1 10.6823 2.6469 3.8394 20 6 10.8613 0.7280 4.7570 21 7 10.2907 -0.4398 4.9578 22 14 12.5867 1.0470 5.3975 23 1 12.5157 1.4851 6.8146 24 1 13.3876 -0.2001 5.3045 25 1 13.2287 2.1095 4.5826 26 6 8.1609 2.7836 3.0219 27 6 4.1917 1.1226 1.3961 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.4175 3.4402 0.4298 32 1 4.5104 3.0297 -0.9624 33 1 5.8663 0.9232 4.0609 34 1 5.9380 2.3265 5.1608 35 1 7.7976 0.2581 5.1819 36 1 8.1734 1.9260 5.7213 37 1 9.0076 -0.4344 3.1107 38 1 10.7658 -1.1354 5.4388 39 1 8.5451 3.6688 3.5287 40 1 8.3924 2.8241 1.9576 41 1 4.6622 0.1532 1.5604 42 1 3.5244 1.4134 2.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364884900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:17 Heat of formation + Delta-G solvation = -177.448145 kcal Electronic energy + Delta-G solvation = -27804.159294 eV Core-core repulsion = 23684.640415 eV Total energy + Delta-G solvation = -4119.518879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 5.50 seconds Orbital eigenvalues (eV) -41.01842 -38.61045 -38.05774 -36.86005 -36.50985 -35.70832 -34.28490 -32.20551 -29.27874 -29.00848 -28.28867 -26.80101 -26.17017 -24.85923 -22.37274 -21.46262 -19.88881 -19.84099 -18.78733 -18.16397 -17.53503 -17.12267 -16.94283 -16.65545 -15.88924 -15.74237 -15.34887 -14.99386 -14.48016 -14.13503 -13.85481 -13.64100 -13.39860 -13.00903 -12.90759 -12.84313 -12.42886 -12.41417 -12.22196 -11.93658 -11.85308 -11.83654 -11.75474 -11.72218 -11.37187 -11.07573 -11.06299 -10.97064 -10.78350 -10.70020 -10.55549 -10.47014 -10.21019 -10.03152 -9.42559 -8.70394 -8.34596 -8.21697 -6.32292 -4.39330 0.47015 1.90499 2.44701 2.91458 3.17885 3.26305 3.30185 3.73539 3.86437 4.10485 4.14323 4.23881 4.49584 4.59887 4.72283 4.82927 4.90778 4.94902 5.20270 5.24356 5.27416 5.35055 5.39434 5.49014 5.59709 5.83501 5.88454 5.91933 6.01810 6.09779 6.18879 6.34236 6.60193 6.78013 6.93675 7.02952 7.33442 7.35795 7.47409 7.71475 7.99282 8.63632 9.28373 9.40954 10.75265 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.003161 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.570226 B = 8856.682630 C = 9465.306201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.504 6.504 5 C -0.098 4.098 6 H 0.135 0.865 7 C -0.091 4.091 8 C -0.629 4.629 9 H 0.162 0.838 10 S 2.631 3.369 11 O -0.957 6.957 12 O -0.955 6.955 13 N -1.002 6.002 14 C 0.124 3.876 15 C -0.134 4.134 16 C 0.250 3.750 17 O -0.587 6.587 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.137 3.863 27 C -0.089 4.089 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.385 0.615 38 H 0.268 0.732 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -1.593 -7.994 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.118 4.118 6 H 0.153 0.847 7 C -0.130 4.130 8 C -0.736 4.736 9 H 0.180 0.820 10 S 2.725 3.275 11 O -0.947 6.947 12 O -0.946 6.946 13 N -0.841 5.841 14 C -0.001 4.001 15 C -0.174 4.174 16 C 0.209 3.791 17 O -0.397 6.397 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C 0.012 3.988 27 C -0.127 4.127 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.646 -0.123 -8.185 16.778 hybrid contribution 1.137 -1.001 0.392 1.565 sum -13.509 -1.124 -7.793 15.636 Atomic orbital electron populations 1.23299 0.76327 1.03783 1.02639 1.86531 1.23457 1.33335 1.83890 1.23655 0.91718 0.81397 0.71991 1.90675 1.66948 1.36417 1.45032 1.22500 0.87056 1.00431 1.01779 0.84720 1.22619 0.94754 0.95366 1.00237 1.32134 1.07076 1.16024 1.18386 0.81995 1.04347 0.73075 0.75085 0.75041 1.93562 1.53281 1.86017 1.61850 1.93570 1.74703 1.44935 1.81368 1.58406 1.18719 1.64481 1.42532 1.21783 0.99919 0.91695 0.86747 1.23151 0.92089 1.01905 1.00254 1.19624 0.92266 0.82671 0.84575 1.86039 1.85225 1.22064 1.46336 1.21514 0.97074 1.02351 1.36635 0.91607 1.24984 0.98499 0.94724 0.94780 1.69627 1.38358 1.03814 1.41685 0.86417 0.83497 0.77909 0.79239 1.20518 1.21107 1.19667 1.22144 0.76619 0.99490 1.00529 1.22571 0.95509 0.99395 0.95240 0.87998 0.91721 0.91909 0.87884 0.88258 0.92884 0.92544 0.89951 0.91462 0.76407 0.92169 0.90730 0.91635 0.87721 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.74 10.57 -39.26 -0.41 -4.16 16 3 C 0.47 5.56 7.48 36.01 0.27 5.83 16 4 O -0.50 -7.24 15.65 -18.75 -0.29 -7.53 16 5 C -0.10 -1.00 4.26 -90.96 -0.39 -1.39 16 6 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.09 -1.02 6.99 -25.92 -0.18 -1.20 16 8 C -0.63 -7.81 4.52 -25.92 -0.12 -7.92 16 9 H 0.16 1.82 8.14 -51.93 -0.42 1.40 16 10 S 2.63 43.58 5.62 -107.50 -0.60 42.98 16 11 O -0.96 -17.55 16.78 -57.54 -0.97 -18.52 16 12 O -0.96 -18.28 17.60 -57.54 -1.01 -19.29 16 13 N -1.00 -18.26 3.62 -111.42 -0.40 -18.67 16 14 C 0.12 2.23 6.90 -3.07 -0.02 2.21 16 15 C -0.13 -2.80 5.50 -24.90 -0.14 -2.94 16 16 C 0.25 5.65 0.89 -89.62 -0.08 5.57 16 17 O -0.59 -13.52 13.19 -35.23 -0.46 -13.99 16 18 C -0.54 -13.37 8.26 -34.44 -0.28 -13.65 16 19 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 20 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 21 N -0.90 -22.17 10.77 55.43 0.60 -21.57 16 22 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C 0.14 2.78 6.06 -2.53 -0.02 2.77 16 27 C -0.09 -1.01 7.19 -25.92 -0.19 -1.20 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 1.25 7.39 -51.93 -0.38 0.86 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.79 7.71 -51.93 -0.40 1.39 16 36 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.38 9.14 7.18 45.56 0.33 9.47 16 38 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 39 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 1.26 7.38 -51.93 -0.38 0.87 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -30.72 361.75 -8.74 -39.47 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.44 Total: 10.13 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.17 Total: -8.89 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.19 Total: -40.24 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -3.15 Total: -63.48 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 43.58 SS G_CDS: -0.60 Total: 42.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.72 -8.74 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.980 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.50 seconds