Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00019 * 2 1 4 4 O 1.20829 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00142 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.84683 * 48.80771 * 5 3 2 7 7 C 1.53780 * 113.61517 * 180.02562 * 5 3 2 8 8 C 1.53780 * 87.07758 * 139.98332 * 7 5 3 9 9 H 1.08996 * 113.61593 * 89.20575 * 8 7 5 10 10 S 1.81404 * 113.61046 * 220.01495 * 8 7 5 11 11 O 1.42106 * 110.54104 * 68.38296 * 10 8 7 12 12 O 1.42097 * 110.54670 * 291.62841 * 10 8 7 13 13 N 1.65603 * 104.44907 * 180.02562 * 10 8 7 14 14 C 1.47023 * 125.64955 * 269.96285 * 13 10 8 15 15 C 1.54320 * 107.27144 * 178.97314 * 14 13 10 16 16 C 1.55160 * 102.94354 * 337.81061 * 15 14 13 17 17 O 1.42902 * 111.03514 * 277.41058 * 16 15 14 18 18 C 1.50703 * 111.00343 * 153.57555 * 16 15 14 19 19 H 1.08000 * 119.99788 * 242.54625 * 18 16 15 20 20 C 1.37875 * 120.00108 * 62.55511 * 18 16 15 21 21 N 1.31507 * 120.00076 * 4.91626 * 20 18 16 22 22 Si 1.86796 * 119.99747 * 184.92320 * 20 18 16 23 23 H 1.48495 * 109.47421 * 94.99529 * 22 20 18 24 24 H 1.48498 * 109.46994 * 214.99581 * 22 20 18 25 25 H 1.48502 * 109.47138 * 334.99464 * 22 20 18 26 26 C 1.47425 * 125.64573 * 90.00331 * 13 10 8 27 27 C 1.53777 * 87.08367 * 334.56420 * 8 7 5 28 28 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47176 * 299.99328 * 1 2 3 30 30 H 1.08999 * 109.47502 * 59.99289 * 1 2 3 31 31 H 1.08997 * 113.61445 * 25.43613 * 7 5 3 32 32 H 1.09001 * 113.61178 * 254.53053 * 7 5 3 33 33 H 1.09004 * 109.88119 * 59.55779 * 14 13 10 34 34 H 1.09000 * 110.01116 * 298.46700 * 14 13 10 35 35 H 1.09001 * 110.72271 * 219.44342 * 15 14 13 36 36 H 1.09004 * 110.86881 * 96.24134 * 15 14 13 37 37 H 0.96700 * 113.99995 * 292.21943 * 17 16 15 38 38 H 0.97005 * 120.00125 * 180.02562 * 21 20 18 39 39 H 1.08995 * 110.36898 * 85.25641 * 26 13 10 40 40 H 1.08997 * 110.36681 * 322.92660 * 26 13 10 41 41 H 1.09003 * 113.61005 * 139.97981 * 27 8 7 42 42 H 1.08993 * 113.61800 * 270.88590 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0233 0.6366 -0.7568 7 6 4.1077 2.7142 0.0001 8 6 5.1814 2.2261 0.9869 9 1 6.0816 1.8492 0.5014 10 16 5.5400 3.4093 2.3143 11 8 4.4286 3.5256 3.1923 12 8 6.1858 4.5629 1.7932 13 7 6.7056 2.6664 3.2264 14 6 6.4605 1.7815 4.3746 15 6 7.8359 1.3075 4.8895 16 6 8.7547 1.5001 3.6542 17 8 8.6489 0.3917 2.7584 18 6 10.1858 1.7169 4.0739 19 1 10.6823 2.6469 3.8394 20 6 10.8613 0.7280 4.7570 21 7 10.2907 -0.4398 4.9578 22 14 12.5867 1.0470 5.3975 23 1 12.5157 1.4851 6.8146 24 1 13.3876 -0.2001 5.3045 25 1 13.2287 2.1095 4.5826 26 6 8.1609 2.7836 3.0219 27 6 4.1917 1.1226 1.3961 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.4175 3.4402 0.4298 32 1 4.5104 3.0297 -0.9624 33 1 5.8663 0.9232 4.0609 34 1 5.9380 2.3265 5.1608 35 1 7.7976 0.2581 5.1819 36 1 8.1734 1.9260 5.7213 37 1 9.0076 -0.4344 3.1107 38 1 10.7658 -1.1354 5.4388 39 1 8.5451 3.6688 3.5287 40 1 8.3924 2.8241 1.9576 41 1 4.6622 0.1532 1.5604 42 1 3.5244 1.4134 2.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364884900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = -200.139792 kcal Electronic energy + Delta-G solvation = -27805.143277 eV Core-core repulsion = 23684.640415 eV Total energy + Delta-G solvation = -4120.502863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.89510 -39.69277 -39.49698 -38.23955 -37.41475 -37.10845 -35.97261 -34.08097 -30.89639 -29.92866 -29.80510 -27.59861 -27.07646 -26.61989 -23.44966 -22.84212 -21.56292 -20.78460 -19.99473 -19.41145 -18.91556 -18.52338 -18.12735 -17.49861 -17.08376 -16.87631 -16.77976 -16.48707 -16.02054 -15.71947 -15.03987 -14.71220 -14.56573 -14.39818 -14.11081 -13.86775 -13.70834 -13.62166 -13.44150 -13.36495 -13.24541 -13.16121 -13.13358 -12.96959 -12.76514 -12.65781 -12.50060 -12.27049 -12.14076 -11.84439 -11.81647 -11.79705 -11.60570 -11.34245 -11.13806 -10.55445 -10.04883 -9.77494 -8.19651 -6.32286 -0.81805 1.01973 1.44410 1.48717 1.55478 1.59139 1.69675 2.43044 2.66726 2.80891 3.02749 3.06678 3.25206 3.32171 3.68505 3.76973 3.94320 4.19909 4.28588 4.29642 4.31822 4.38063 4.39299 4.44771 4.51530 4.62869 4.66241 4.71086 4.75551 4.79720 4.98195 5.03195 5.24404 5.30192 5.30685 5.45058 5.58037 5.62065 5.85062 6.15768 6.62526 6.72072 7.38440 7.53864 8.86086 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.003161 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.570226 B = 8856.682630 C = 9465.306201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.536 6.536 5 C -0.086 4.086 6 H 0.170 0.830 7 C -0.099 4.099 8 C -0.603 4.603 9 H 0.184 0.816 10 S 2.627 3.373 11 O -0.981 6.981 12 O -0.988 6.988 13 N -1.008 6.008 14 C 0.126 3.874 15 C -0.128 4.128 16 C 0.239 3.761 17 O -0.585 6.585 18 C -0.561 4.561 19 H 0.056 0.944 20 C 0.038 3.962 21 N -0.906 5.906 22 Si 0.954 3.046 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.140 3.860 27 C -0.094 4.094 28 H 0.133 0.867 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.380 0.620 38 H 0.270 0.730 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 -2.904 -9.272 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.426 6.426 5 C -0.106 4.106 6 H 0.187 0.813 7 C -0.138 4.138 8 C -0.716 4.716 9 H 0.201 0.799 10 S 2.726 3.274 11 O -0.971 6.971 12 O -0.979 6.979 13 N -0.845 5.845 14 C 0.001 3.999 15 C -0.168 4.168 16 C 0.198 3.802 17 O -0.394 6.394 18 C -0.600 4.600 19 H 0.075 0.925 20 C -0.164 4.164 21 N -0.545 5.545 22 Si 0.781 3.219 23 H -0.205 1.205 24 H -0.207 1.207 25 H -0.199 1.199 26 C 0.015 3.985 27 C -0.132 4.132 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.175 -1.410 -9.415 17.914 hybrid contribution 1.210 -0.629 0.743 1.553 sum -13.965 -2.038 -8.671 16.564 Atomic orbital electron populations 1.23586 0.74860 1.05826 1.02543 1.86521 1.24953 1.32533 1.83365 1.23946 0.92334 0.81276 0.71085 1.90669 1.67777 1.37494 1.46636 1.22560 0.86191 1.00058 1.01800 0.81275 1.22786 0.93986 0.96086 1.00930 1.31894 1.08608 1.14752 1.16332 0.79870 1.04341 0.72101 0.75367 0.75579 1.93528 1.53444 1.86658 1.63503 1.93525 1.75194 1.47440 1.81701 1.58345 1.17918 1.64673 1.43552 1.21757 0.98444 0.92598 0.87128 1.22974 0.93497 1.01024 0.99287 1.19720 0.91761 0.83308 0.85423 1.86020 1.85079 1.21872 1.46436 1.21777 0.98589 1.02235 1.37361 0.92543 1.25548 1.01234 0.94688 0.94917 1.69685 1.39169 1.04027 1.41661 0.85603 0.80202 0.77618 0.78498 1.20451 1.20743 1.19927 1.21948 0.77883 0.98048 1.00655 1.22695 0.95064 0.99647 0.95824 0.84935 0.92262 0.91650 0.89250 0.85507 0.90593 0.91914 0.90993 0.92839 0.77006 0.92025 0.91614 0.90941 0.85789 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.65 10.57 -51.41 -0.54 -7.19 16 3 C 0.47 10.11 7.48 71.24 0.53 10.64 16 4 O -0.54 -14.82 15.65 21.95 0.34 -14.48 16 5 C -0.09 -1.48 4.26 -11.01 -0.05 -1.53 16 6 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 7 C -0.10 -1.95 6.99 31.12 0.22 -1.73 16 8 C -0.60 -13.39 4.52 31.12 0.14 -13.25 16 9 H 0.18 3.43 8.14 -2.39 -0.02 3.41 16 10 S 2.63 85.07 5.62 -56.49 -0.32 84.75 16 11 O -0.98 -35.77 16.78 -127.65 -2.14 -37.91 16 12 O -0.99 -37.71 17.60 -127.65 -2.25 -39.96 16 13 N -1.01 -36.02 3.62 -506.43 -1.83 -37.85 16 14 C 0.13 4.44 6.90 86.73 0.60 5.04 16 15 C -0.13 -5.35 5.50 31.78 0.17 -5.18 16 16 C 0.24 10.79 0.89 -10.15 -0.01 10.78 16 17 O -0.59 -26.50 13.19 -148.98 -1.97 -28.47 16 18 C -0.56 -28.10 8.26 25.60 0.21 -27.89 16 19 H 0.06 2.85 7.79 -2.91 -0.02 2.83 16 20 C 0.04 1.85 5.26 84.66 0.45 2.29 16 21 N -0.91 -44.60 10.77 21.45 0.23 -44.37 16 22 Si 0.95 40.07 29.54 68.60 2.03 42.09 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.14 5.68 6.06 86.86 0.53 6.20 16 27 C -0.09 -1.86 7.19 31.12 0.22 -1.63 16 28 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.09 2.06 7.39 -2.39 -0.02 2.04 16 32 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 3.12 7.71 -2.39 -0.02 3.10 16 36 H 0.05 2.32 8.03 -2.38 -0.02 2.31 16 37 H 0.38 17.89 7.18 -74.06 -0.53 17.36 16 38 H 0.27 12.75 8.31 -92.70 -0.77 11.98 16 39 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 42 H 0.09 2.11 7.38 -2.39 -0.02 2.09 16 Total: -1.00 -65.95 361.75 -1.73 -67.68 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.51 Total: 30.44 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.21 Total: -14.73 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.60 Total: -82.22 kcal Atomic # 8 Polarization: -121.46 SS G_CDS: -6.55 Total: -128.01 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 85.07 SS G_CDS: -0.32 Total: 84.75 kcal Total: -65.95 -1.73 -67.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.460 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds