Wall clock time and date at job start Tue Mar 31 2020 16:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00276 * 2 1 4 4 O 1.20831 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99900 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.84776 * 311.18640 * 5 3 2 7 7 C 1.53775 * 113.61809 * 82.50250 * 5 3 2 8 8 C 1.53781 * 87.08437 * 139.97830 * 7 5 3 9 9 H 1.09000 * 113.68746 * 89.12169 * 8 7 5 10 10 S 1.81398 * 113.61763 * 220.01736 * 8 7 5 11 11 O 1.42095 * 110.54528 * 170.87378 * 10 8 7 12 12 O 1.42104 * 110.54086 * 34.11742 * 10 8 7 13 13 N 1.65607 * 104.44868 * 282.49949 * 10 8 7 14 14 C 1.47020 * 125.64915 * 90.02229 * 13 10 8 15 15 C 1.54324 * 107.39983 * 181.10210 * 14 13 10 16 16 C 1.55159 * 102.94134 * 22.11770 * 15 14 13 17 17 O 1.42891 * 111.00575 * 82.57420 * 16 15 14 18 18 C 1.50704 * 111.00136 * 206.38587 * 16 15 14 19 19 H 1.08001 * 120.00048 * 118.54613 * 18 16 15 20 20 C 1.37881 * 119.99829 * 298.54599 * 18 16 15 21 21 N 1.31507 * 120.00174 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99776 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47196 * 59.99721 * 22 20 18 24 24 H 1.48496 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46963 * 299.99920 * 22 20 18 26 26 C 1.47743 * 125.81954 * 269.92845 * 13 10 8 27 27 C 1.53776 * 87.08008 * 334.56864 * 8 7 5 28 28 H 1.08999 * 109.47578 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47227 * 300.00301 * 1 2 3 30 30 H 1.09003 * 109.47520 * 59.99735 * 1 2 3 31 31 H 1.08999 * 113.61403 * 25.42813 * 7 5 3 32 32 H 1.09005 * 113.60928 * 254.52867 * 7 5 3 33 33 H 1.09002 * 109.88367 * 61.60709 * 14 13 10 34 34 H 1.09000 * 109.88319 * 300.59327 * 14 13 10 35 35 H 1.09004 * 110.71964 * 140.48013 * 15 14 13 36 36 H 1.08999 * 110.72009 * 263.75165 * 15 14 13 37 37 H 0.96701 * 114.00463 * 61.45048 * 17 16 15 38 38 H 0.96999 * 120.00092 * 179.97438 * 21 20 18 39 39 H 1.09003 * 110.29227 * 37.02548 * 26 13 10 40 40 H 1.08996 * 110.53057 * 274.75759 * 26 13 10 41 41 H 1.08996 * 113.62069 * 139.98326 * 27 8 7 42 42 H 1.09002 * 113.61336 * 270.88360 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0239 0.6361 0.7551 7 6 4.1906 1.1236 -1.3978 8 6 5.1807 2.2268 -0.9886 9 1 6.0812 1.8493 -0.5041 10 16 5.5383 3.4110 -2.3153 11 8 6.2857 4.5107 -1.8142 12 8 4.3884 3.6148 -3.1251 13 7 6.5992 2.6138 -3.3060 14 6 6.2320 1.7690 -4.4519 15 6 7.5401 1.2157 -5.0553 16 6 8.5408 1.3248 -3.8746 17 8 8.4138 0.2092 -2.9908 18 6 9.9560 1.4544 -4.3763 19 1 10.5326 2.3376 -4.1439 20 6 10.5147 0.4454 -5.1320 21 7 9.8128 -0.6302 -5.4145 22 14 12.2690 0.6058 -5.7532 23 1 13.1925 0.7425 -4.5984 24 1 12.6296 -0.6038 -6.5355 25 1 12.3794 1.8065 -6.6201 26 6 8.0719 2.6325 -3.1893 27 6 4.1079 2.7140 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5227 1.4151 -2.2083 32 1 4.6609 0.1542 -1.5633 33 1 5.7027 2.3638 -5.1964 34 1 5.6004 0.9457 -4.1182 35 1 7.4150 0.1767 -5.3601 36 1 7.8666 1.8285 -5.8956 37 1 8.6027 -0.6441 -3.4047 38 1 10.2057 -1.3398 -5.9465 39 1 8.3680 2.6382 -2.1403 40 1 8.4851 3.4999 -3.7041 41 1 4.5112 3.0288 0.9619 42 1 3.4172 3.4403 -0.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364884902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:27 Heat of formation + Delta-G solvation = -177.009591 kcal Electronic energy + Delta-G solvation = -27843.446475 eV Core-core repulsion = 23723.946614 eV Total energy + Delta-G solvation = -4119.499862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01384 -38.61151 -38.05136 -36.85650 -36.50276 -35.70939 -34.26565 -32.23972 -29.24400 -29.00382 -28.29081 -26.79833 -26.17131 -24.84806 -22.36978 -21.46009 -19.88900 -19.84802 -18.78567 -18.15482 -17.51998 -17.10985 -16.92607 -16.64648 -15.91488 -15.74144 -15.33010 -14.96712 -14.47477 -14.19433 -13.84890 -13.63747 -13.40417 -13.00575 -12.90474 -12.83832 -12.41857 -12.39618 -12.22767 -11.94932 -11.85293 -11.83538 -11.74979 -11.72216 -11.35533 -11.06934 -11.04312 -10.96502 -10.78551 -10.69555 -10.56740 -10.46469 -10.20758 -10.01930 -9.40504 -8.70727 -8.33702 -8.23454 -6.29732 -4.37476 0.46812 1.91104 2.45203 2.90617 3.20959 3.25932 3.29531 3.75081 3.86023 4.10870 4.15134 4.24994 4.49796 4.57690 4.72425 4.83502 4.91340 4.96504 5.20003 5.24903 5.27498 5.34966 5.39822 5.48920 5.60630 5.82243 5.88485 5.92209 6.01778 6.10414 6.19251 6.34162 6.60135 6.77351 6.94728 7.02529 7.33407 7.36954 7.48067 7.72356 8.02065 8.64861 9.27902 9.36482 10.77513 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.003224 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.813051 B = 8683.296802 C = 9351.201293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.503 6.503 5 C -0.098 4.098 6 H 0.135 0.865 7 C -0.088 4.088 8 C -0.628 4.628 9 H 0.161 0.839 10 S 2.632 3.368 11 O -0.956 6.956 12 O -0.956 6.956 13 N -1.003 6.003 14 C 0.122 3.878 15 C -0.132 4.132 16 C 0.250 3.750 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.064 0.936 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.902 3.098 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.138 3.862 27 C -0.092 4.092 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -1.193 8.819 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.117 4.117 6 H 0.153 0.847 7 C -0.126 4.126 8 C -0.736 4.736 9 H 0.179 0.821 10 S 2.725 3.275 11 O -0.946 6.946 12 O -0.947 6.947 13 N -0.842 5.842 14 C -0.003 4.003 15 C -0.172 4.172 16 C 0.209 3.791 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.082 0.918 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.013 3.987 27 C -0.131 4.131 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.992 0.331 9.080 16.683 hybrid contribution 1.020 -1.094 -0.425 1.555 sum -12.972 -0.763 8.655 15.613 Atomic orbital electron populations 1.23298 0.76327 1.03782 1.02637 1.86529 1.23456 1.33336 1.83890 1.23650 0.91715 0.81400 0.72009 1.90676 1.66945 1.36409 1.45010 1.22495 0.87078 1.00391 1.01776 0.84746 1.22557 0.95436 0.99438 0.95181 1.32124 1.07042 1.16092 1.18335 0.82088 1.04335 0.73225 0.75015 0.74931 1.93568 1.70867 1.48464 1.81730 1.93564 1.51119 1.84747 1.65250 1.58484 1.18110 1.65972 1.41654 1.21817 0.99300 0.92381 0.86812 1.23160 0.92654 1.01620 0.99754 1.19621 0.92351 0.82424 0.84731 1.86073 1.92885 1.18480 1.41893 1.21441 0.98186 1.04812 1.33093 0.91759 1.24973 0.98231 0.94915 0.94806 1.69698 1.37086 1.07704 1.38909 0.86498 0.84101 0.77572 0.78914 1.20056 1.21206 1.20070 1.22187 0.76254 0.99435 1.00791 1.22634 0.94818 0.95473 1.00149 0.87998 0.91920 0.91716 0.87857 0.87653 0.92581 0.92941 0.89693 0.91443 0.76945 0.92216 0.91679 0.90667 0.88315 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.76 10.56 -39.24 -0.41 -4.17 16 3 C 0.47 5.58 7.48 36.01 0.27 5.85 16 4 O -0.50 -7.26 15.65 -18.75 -0.29 -7.55 16 5 C -0.10 -1.00 4.26 -90.96 -0.39 -1.39 16 6 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 7 C -0.09 -1.00 7.19 -25.92 -0.19 -1.19 16 8 C -0.63 -7.77 4.52 -25.92 -0.12 -7.88 16 9 H 0.16 1.78 8.14 -51.93 -0.42 1.36 16 10 S 2.63 43.51 5.58 -107.50 -0.60 42.91 16 11 O -0.96 -18.27 17.62 -57.54 -1.01 -19.29 16 12 O -0.96 -17.58 16.92 -57.54 -0.97 -18.55 16 13 N -1.00 -18.22 3.63 -111.18 -0.40 -18.62 16 14 C 0.12 2.20 6.89 -3.06 -0.02 2.18 16 15 C -0.13 -2.75 5.38 -24.90 -0.13 -2.89 16 16 C 0.25 5.63 0.87 -89.62 -0.08 5.55 16 17 O -0.58 -13.31 13.16 -35.23 -0.46 -13.77 16 18 C -0.54 -13.37 8.27 -34.44 -0.28 -13.66 16 19 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 20 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 21 N -0.89 -22.16 10.76 55.43 0.60 -21.56 16 22 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.14 2.79 6.09 -2.35 -0.01 2.78 16 27 C -0.09 -1.02 6.99 -25.92 -0.18 -1.20 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 1.25 7.48 -51.93 -0.39 0.86 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.84 7.55 -51.93 -0.39 1.44 16 36 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 37 H 0.38 8.84 7.56 45.56 0.34 9.18 16 38 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 1.27 7.39 -51.93 -0.38 0.88 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -30.79 362.07 -8.72 -39.51 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.42 Total: 9.79 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.16 Total: -8.80 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.19 Total: -40.18 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -3.16 Total: -63.34 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.60 Total: 42.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.79 -8.72 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.499 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds