Wall clock time and date at job start Tue Mar 31 2020 16:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00276 * 2 1 4 4 O 1.20831 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99900 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.84776 * 311.18640 * 5 3 2 7 7 C 1.53775 * 113.61809 * 82.50250 * 5 3 2 8 8 C 1.53781 * 87.08437 * 139.97830 * 7 5 3 9 9 H 1.09000 * 113.68746 * 89.12169 * 8 7 5 10 10 S 1.81398 * 113.61763 * 220.01736 * 8 7 5 11 11 O 1.42095 * 110.54528 * 170.87378 * 10 8 7 12 12 O 1.42104 * 110.54086 * 34.11742 * 10 8 7 13 13 N 1.65607 * 104.44868 * 282.49949 * 10 8 7 14 14 C 1.47020 * 125.64915 * 90.02229 * 13 10 8 15 15 C 1.54324 * 107.39983 * 181.10210 * 14 13 10 16 16 C 1.55159 * 102.94134 * 22.11770 * 15 14 13 17 17 O 1.42891 * 111.00575 * 82.57420 * 16 15 14 18 18 C 1.50704 * 111.00136 * 206.38587 * 16 15 14 19 19 H 1.08001 * 120.00048 * 118.54613 * 18 16 15 20 20 C 1.37881 * 119.99829 * 298.54599 * 18 16 15 21 21 N 1.31507 * 120.00174 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99776 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47196 * 59.99721 * 22 20 18 24 24 H 1.48496 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46963 * 299.99920 * 22 20 18 26 26 C 1.47743 * 125.81954 * 269.92845 * 13 10 8 27 27 C 1.53776 * 87.08008 * 334.56864 * 8 7 5 28 28 H 1.08999 * 109.47578 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47227 * 300.00301 * 1 2 3 30 30 H 1.09003 * 109.47520 * 59.99735 * 1 2 3 31 31 H 1.08999 * 113.61403 * 25.42813 * 7 5 3 32 32 H 1.09005 * 113.60928 * 254.52867 * 7 5 3 33 33 H 1.09002 * 109.88367 * 61.60709 * 14 13 10 34 34 H 1.09000 * 109.88319 * 300.59327 * 14 13 10 35 35 H 1.09004 * 110.71964 * 140.48013 * 15 14 13 36 36 H 1.08999 * 110.72009 * 263.75165 * 15 14 13 37 37 H 0.96701 * 114.00463 * 61.45048 * 17 16 15 38 38 H 0.96999 * 120.00092 * 179.97438 * 21 20 18 39 39 H 1.09003 * 110.29227 * 37.02548 * 26 13 10 40 40 H 1.08996 * 110.53057 * 274.75759 * 26 13 10 41 41 H 1.08996 * 113.62069 * 139.98326 * 27 8 7 42 42 H 1.09002 * 113.61336 * 270.88360 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0239 0.6361 0.7551 7 6 4.1906 1.1236 -1.3978 8 6 5.1807 2.2268 -0.9886 9 1 6.0812 1.8493 -0.5041 10 16 5.5383 3.4110 -2.3153 11 8 6.2857 4.5107 -1.8142 12 8 4.3884 3.6148 -3.1251 13 7 6.5992 2.6138 -3.3060 14 6 6.2320 1.7690 -4.4519 15 6 7.5401 1.2157 -5.0553 16 6 8.5408 1.3248 -3.8746 17 8 8.4138 0.2092 -2.9908 18 6 9.9560 1.4544 -4.3763 19 1 10.5326 2.3376 -4.1439 20 6 10.5147 0.4454 -5.1320 21 7 9.8128 -0.6302 -5.4145 22 14 12.2690 0.6058 -5.7532 23 1 13.1925 0.7425 -4.5984 24 1 12.6296 -0.6038 -6.5355 25 1 12.3794 1.8065 -6.6201 26 6 8.0719 2.6325 -3.1893 27 6 4.1079 2.7140 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5227 1.4151 -2.2083 32 1 4.6609 0.1542 -1.5633 33 1 5.7027 2.3638 -5.1964 34 1 5.6004 0.9457 -4.1182 35 1 7.4150 0.1767 -5.3601 36 1 7.8666 1.8285 -5.8956 37 1 8.6027 -0.6441 -3.4047 38 1 10.2057 -1.3398 -5.9465 39 1 8.3680 2.6382 -2.1403 40 1 8.4851 3.4999 -3.7041 41 1 4.5112 3.0288 0.9619 42 1 3.4172 3.4403 -0.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364884902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:26 Heat of formation + Delta-G solvation = -199.850916 kcal Electronic energy + Delta-G solvation = -27844.436949 eV Core-core repulsion = 23723.946614 eV Total energy + Delta-G solvation = -4120.490336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.89205 -39.68501 -39.49724 -38.23305 -37.41101 -37.10828 -35.94216 -34.11309 -30.85810 -29.92753 -29.80328 -27.59659 -27.08118 -26.60572 -23.44474 -22.84097 -21.56839 -20.78022 -19.99334 -19.38666 -18.89582 -18.51076 -18.12649 -17.49438 -17.09776 -16.85938 -16.77033 -16.47721 -16.01687 -15.76803 -15.04412 -14.70900 -14.55848 -14.39924 -14.07986 -13.86904 -13.69928 -13.62735 -13.43790 -13.34968 -13.24830 -13.17130 -13.10654 -12.96697 -12.74166 -12.65387 -12.53293 -12.27634 -12.12808 -11.84138 -11.81034 -11.78216 -11.60138 -11.33566 -11.11073 -10.56646 -10.03984 -9.78221 -8.17410 -6.30660 -0.81775 1.02338 1.46662 1.48654 1.53933 1.58398 1.70001 2.43711 2.68008 2.81680 3.03284 3.08362 3.25296 3.30754 3.68760 3.77476 3.94554 4.18796 4.29076 4.30103 4.31922 4.38306 4.39883 4.45172 4.51918 4.62956 4.66427 4.71187 4.75926 4.80336 4.98643 5.03482 5.24032 5.30588 5.30997 5.45028 5.57427 5.64361 5.85716 6.18716 6.62945 6.73062 7.39878 7.50062 8.87664 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.003224 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.813051 B = 8683.296802 C = 9351.201293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.536 6.536 5 C -0.086 4.086 6 H 0.170 0.830 7 C -0.093 4.093 8 C -0.602 4.602 9 H 0.184 0.816 10 S 2.627 3.373 11 O -0.988 6.988 12 O -0.981 6.981 13 N -1.008 6.008 14 C 0.124 3.876 15 C -0.125 4.125 16 C 0.240 3.760 17 O -0.582 6.582 18 C -0.562 4.562 19 H 0.055 0.945 20 C 0.038 3.962 21 N -0.905 5.905 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.277 1.277 26 C 0.141 3.859 27 C -0.099 4.099 28 H 0.132 0.868 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.377 0.623 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -2.520 10.227 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.426 6.426 5 C -0.106 4.106 6 H 0.187 0.813 7 C -0.132 4.132 8 C -0.715 4.715 9 H 0.202 0.798 10 S 2.726 3.274 11 O -0.979 6.979 12 O -0.972 6.972 13 N -0.845 5.845 14 C -0.001 4.001 15 C -0.165 4.165 16 C 0.199 3.801 17 O -0.390 6.390 18 C -0.600 4.600 19 H 0.074 0.926 20 C -0.163 4.163 21 N -0.544 5.544 22 Si 0.779 3.221 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.202 1.202 26 C 0.016 3.984 27 C -0.138 4.138 28 H 0.151 0.849 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.485 -0.972 10.439 17.881 hybrid contribution 1.083 -0.713 -0.816 1.532 sum -13.402 -1.684 9.623 16.585 Atomic orbital electron populations 1.23583 0.74873 1.05817 1.02537 1.86520 1.24944 1.32550 1.83369 1.23952 0.92351 0.81268 0.71093 1.90670 1.67784 1.37490 1.46622 1.22559 0.86178 1.00070 1.01775 0.81260 1.22681 0.95027 0.99673 0.95796 1.31886 1.08630 1.14753 1.16251 0.79802 1.04330 0.72227 0.75324 0.75472 1.93523 1.71467 1.50867 1.82058 1.93529 1.51346 1.85488 1.66824 1.58419 1.17218 1.66159 1.42752 1.21782 0.98026 0.93165 0.87090 1.22969 0.93821 1.00839 0.98876 1.19694 0.91774 0.83125 0.85542 1.86053 1.92799 1.18304 1.41877 1.21730 0.99678 1.04790 1.33809 0.92650 1.25533 1.01012 0.94828 0.94967 1.69761 1.37888 1.07827 1.38892 0.85696 0.80705 0.77404 0.78253 1.20145 1.20772 1.20215 1.21989 0.77616 0.97945 1.00878 1.22799 0.94027 0.96135 1.00884 0.84945 0.91646 0.92280 0.88841 0.85819 0.92086 0.90566 0.90665 0.93058 0.77399 0.92156 0.90927 0.91626 0.85446 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.69 10.56 -51.36 -0.54 -7.23 16 3 C 0.47 10.13 7.48 71.24 0.53 10.66 16 4 O -0.54 -14.87 15.65 21.95 0.34 -14.53 16 5 C -0.09 -1.47 4.26 -11.01 -0.05 -1.52 16 6 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.09 -1.85 7.19 31.12 0.22 -1.63 16 8 C -0.60 -13.25 4.52 31.12 0.14 -13.11 16 9 H 0.18 3.34 8.14 -2.39 -0.02 3.32 16 10 S 2.63 84.89 5.58 -56.49 -0.32 84.58 16 11 O -0.99 -37.66 17.62 -127.65 -2.25 -39.91 16 12 O -0.98 -35.90 16.92 -127.65 -2.16 -38.06 16 13 N -1.01 -35.93 3.63 -505.67 -1.84 -37.77 16 14 C 0.12 4.39 6.89 86.73 0.60 4.98 16 15 C -0.13 -5.24 5.38 31.78 0.17 -5.06 16 16 C 0.24 10.77 0.87 -10.15 -0.01 10.76 16 17 O -0.58 -26.00 13.16 -148.98 -1.96 -27.96 16 18 C -0.56 -28.16 8.27 25.60 0.21 -27.95 16 19 H 0.06 2.79 7.79 -2.91 -0.02 2.77 16 20 C 0.04 1.88 5.29 84.66 0.45 2.33 16 21 N -0.90 -44.56 10.76 21.45 0.23 -44.33 16 22 Si 0.95 40.17 29.54 68.60 2.03 42.20 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.14 5.70 6.09 86.79 0.53 6.23 16 27 C -0.10 -1.94 6.99 31.12 0.22 -1.72 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.09 2.08 7.48 -2.39 -0.02 2.07 16 32 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 3.25 7.55 -2.38 -0.02 3.23 16 36 H 0.05 2.25 8.03 -2.39 -0.02 2.23 16 37 H 0.38 17.29 7.56 -74.06 -0.56 16.73 16 38 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 39 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 41 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 2.07 7.39 -2.39 -0.02 2.05 16 Total: -1.00 -66.18 362.07 -1.77 -67.95 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.48 Total: 29.55 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.21 Total: -14.50 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.61 Total: -82.09 kcal Atomic # 8 Polarization: -121.11 SS G_CDS: -6.57 Total: -127.68 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 84.89 SS G_CDS: -0.32 Total: 84.58 kcal Total: -66.18 -1.77 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.899 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds