Wall clock time and date at job start Tue Mar 31 2020 16:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00208 * 2 1 4 4 O 1.20828 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.99886 * 330.10957 * 5 3 2 7 7 C 1.54313 * 109.77867 * 91.26038 * 5 3 2 8 8 C 1.55160 * 102.86711 * 141.88496 * 7 5 3 9 9 H 1.09003 * 111.03460 * 82.39286 * 8 7 5 10 10 O 1.42898 * 111.00653 * 206.23227 * 8 7 5 11 11 C 1.54912 * 101.57978 * 324.30739 * 8 7 5 12 12 N 1.47022 * 109.88285 * 209.01358 * 5 3 2 13 13 S 1.65603 * 125.65156 * 61.67547 * 12 5 3 14 14 O 1.42098 * 104.27602 * 150.59687 * 13 12 5 15 15 O 1.42098 * 104.27231 * 22.74024 * 13 12 5 16 16 C 1.81400 * 104.44674 * 266.67138 * 13 12 5 17 17 C 1.53001 * 109.46716 * 188.10908 * 16 13 12 18 18 C 1.50697 * 115.55264 * 302.93880 * 17 16 13 19 19 H 1.08001 * 119.99752 * 99.47055 * 18 17 16 20 20 C 1.37873 * 120.00330 * 279.47325 * 18 17 16 21 21 N 1.31515 * 119.99909 * 6.30041 * 20 18 17 22 22 Si 1.86791 * 120.00386 * 186.30191 * 20 18 17 23 23 H 1.48497 * 109.47499 * 179.97438 * 22 20 18 24 24 H 1.48510 * 109.46987 * 299.99724 * 22 20 18 25 25 H 1.48507 * 109.47362 * 59.99645 * 22 20 18 26 26 C 1.53005 * 117.51592 * 88.64127 * 17 16 13 27 27 C 1.52997 * 60.00029 * 107.47742 * 26 17 16 28 28 H 1.08994 * 109.47064 * 60.00624 * 1 2 3 29 29 H 1.09003 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 300.00206 * 1 2 3 31 31 H 1.09002 * 110.91979 * 23.47093 * 7 5 3 32 32 H 1.09001 * 110.74450 * 260.21842 * 7 5 3 33 33 H 0.96695 * 114.00125 * 173.64834 * 10 8 7 34 34 H 1.08998 * 110.36862 * 278.16949 * 11 8 7 35 35 H 1.08994 * 110.45665 * 155.89295 * 11 8 7 36 36 H 1.08998 * 109.47265 * 68.11055 * 16 13 12 37 37 H 1.09003 * 109.46914 * 308.10863 * 16 13 12 38 38 H 0.97006 * 119.99627 * 354.94574 * 21 20 18 39 39 H 1.09002 * 117.49629 * 214.97078 * 26 17 16 40 40 H 1.08997 * 117.50114 * 359.97438 * 26 17 16 41 41 H 1.08995 * 117.50422 * 252.50942 * 27 26 17 42 42 H 1.09004 * 117.49864 * 107.48207 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9853 0.4074 0.5095 7 6 4.0855 1.3343 -1.4525 8 6 5.2719 2.3295 -1.3547 9 1 6.1749 1.8287 -1.0054 10 8 5.5011 2.9781 -2.6072 11 6 4.7492 3.3334 -0.2970 12 7 4.0026 2.5082 0.6701 13 16 3.7101 2.9023 2.2517 14 8 4.8147 3.7167 2.6200 15 8 3.4772 1.6526 2.8868 16 6 2.1852 3.8834 2.1991 17 6 1.9154 4.4809 3.5815 18 6 1.8085 3.4873 4.7095 19 1 2.6535 3.3159 5.3599 20 6 0.6322 2.7970 4.9111 21 7 -0.3537 2.9117 4.0483 22 14 0.4387 1.6988 6.4096 23 1 -0.9084 1.0741 6.3950 24 1 1.4773 0.6376 6.3831 25 1 0.5933 2.5120 7.6426 26 6 2.5369 5.8431 3.8965 27 6 1.0310 5.7274 3.6519 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3171 1.7152 -2.1253 32 1 4.4308 0.3535 -1.7796 33 1 6.1673 3.6780 -2.5716 34 1 4.0879 4.0645 -0.7620 35 1 5.5818 3.8355 0.1958 36 1 1.3512 3.2436 1.9107 37 1 2.2953 4.6872 1.4710 38 1 -0.2820 3.5372 3.3103 39 1 2.8685 6.0205 4.9196 40 1 3.1385 6.3137 3.1189 41 1 0.6417 6.1220 2.7135 42 1 0.3718 5.8287 4.5142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365727244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:59 Heat of formation + Delta-G solvation = -170.149239 kcal Electronic energy + Delta-G solvation = -29185.112809 eV Core-core repulsion = 25065.910434 eV Total energy + Delta-G solvation = -4119.202375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -40.68576 -38.81505 -37.04950 -36.58039 -36.31937 -35.66818 -35.20383 -31.99539 -30.76687 -29.43699 -28.21765 -27.33137 -24.97455 -23.70526 -21.72794 -21.39245 -21.04839 -19.75817 -18.63520 -18.28080 -17.52478 -17.17880 -16.87246 -16.40582 -15.94657 -15.83530 -15.31669 -14.84202 -14.30426 -14.00108 -13.73556 -13.73302 -13.66171 -13.29607 -13.18232 -13.06018 -12.63758 -12.45554 -12.10220 -11.85352 -11.70702 -11.45916 -11.38723 -11.35499 -11.15501 -11.11745 -10.76926 -10.63302 -10.62314 -10.58595 -10.36774 -10.27541 -10.08343 -9.70273 -9.10048 -8.65693 -8.50688 -8.28277 -6.45303 -4.25529 0.82765 2.12354 2.62804 3.17742 3.44080 3.48990 3.65058 3.85323 4.06308 4.31259 4.45078 4.49329 4.72492 4.79475 4.84476 4.99180 5.02903 5.12479 5.23343 5.26089 5.34168 5.40294 5.46511 5.59218 5.60539 5.73497 5.77285 5.81983 5.90948 6.13222 6.20301 6.32441 6.40340 6.50069 6.54327 6.79042 7.04485 7.17723 7.29968 7.78335 8.04112 8.32041 8.76784 9.55260 10.94082 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.005739 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.812826 B = 4877.532648 C = 5900.003873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.442 3.558 4 O -0.487 6.487 5 C 0.165 3.835 6 H 0.120 0.880 7 C -0.107 4.107 8 C 0.098 3.902 9 H 0.084 0.916 10 O -0.556 6.556 11 C 0.081 3.919 12 N -1.000 6.000 13 S 2.621 3.379 14 O -0.962 6.962 15 O -0.936 6.936 16 C -0.555 4.555 17 C 0.022 3.978 18 C -0.599 4.599 19 H 0.061 0.939 20 C 0.043 3.957 21 N -0.893 5.893 22 Si 1.061 2.939 23 H -0.280 1.280 24 H -0.280 1.280 25 H -0.285 1.285 26 C -0.189 4.189 27 C -0.165 4.165 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.384 0.616 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.276 0.724 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -3.085 -13.424 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.282 3.718 4 O -0.373 6.373 5 C 0.056 3.944 6 H 0.138 0.862 7 C -0.146 4.146 8 C 0.038 3.962 9 H 0.102 0.898 10 O -0.361 6.361 11 C -0.045 4.045 12 N -0.836 5.836 13 S 2.720 3.280 14 O -0.953 6.953 15 O -0.926 6.926 16 C -0.688 4.688 17 C 0.019 3.981 18 C -0.636 4.636 19 H 0.079 0.921 20 C -0.165 4.165 21 N -0.526 5.526 22 Si 0.888 3.112 23 H -0.206 1.206 24 H -0.206 1.206 25 H -0.211 1.211 26 C -0.227 4.227 27 C -0.204 4.204 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.564 -4.547 -12.101 14.498 hybrid contribution 0.500 1.997 -0.925 2.257 sum 7.064 -2.551 -13.026 15.036 Atomic orbital electron populations 1.23368 0.75675 1.03841 1.03240 1.86449 1.23963 1.32735 1.83581 1.24172 0.92272 0.82152 0.73189 1.90701 1.66797 1.36135 1.43701 1.20770 0.87113 0.90669 0.95872 0.86191 1.22540 0.98086 1.01020 0.92952 1.22929 0.97453 0.92457 0.83398 0.89839 1.86491 1.64288 1.54777 1.30582 1.22796 0.96626 0.94369 0.90704 1.59170 1.67782 1.27331 1.29328 1.04973 0.77071 0.75770 0.70175 1.93487 1.50542 1.71421 1.79812 1.93551 1.86849 1.41422 1.70801 1.30111 1.20003 1.13145 1.05581 1.18592 1.01568 0.87800 0.90126 1.21395 1.02126 1.25587 1.14468 0.92088 1.25803 0.92182 0.97319 1.01203 1.70740 1.34493 1.33707 1.13677 0.83677 0.76544 0.76336 0.74664 1.20564 1.20600 1.21103 1.22993 0.95629 1.02629 1.01405 1.22792 0.92535 1.03971 1.01095 0.92030 0.88001 0.90676 0.88965 0.87985 0.76770 0.90479 0.88869 0.84446 0.88245 0.91294 0.89291 0.90785 0.91196 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.51 16 2 O -0.35 -5.54 10.56 -39.23 -0.41 -5.96 16 3 C 0.44 7.53 6.72 36.00 0.24 7.78 16 4 O -0.49 -9.46 13.61 -18.75 -0.26 -9.71 16 5 C 0.16 2.38 3.21 -68.11 -0.22 2.16 16 6 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 7 C -0.11 -1.13 6.19 -24.90 -0.15 -1.28 16 8 C 0.10 0.95 4.43 -24.58 -0.11 0.84 16 9 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 10 O -0.56 -4.88 13.47 -35.23 -0.47 -5.36 16 11 C 0.08 1.01 6.83 -2.52 -0.02 0.99 16 12 N -1.00 -16.48 3.00 -105.64 -0.32 -16.79 16 13 S 2.62 57.38 4.86 -107.50 -0.52 56.86 16 14 O -0.96 -21.97 17.33 -57.54 -1.00 -22.96 16 15 O -0.94 -23.45 17.07 -57.54 -0.98 -24.43 16 16 C -0.55 -12.75 5.18 37.16 0.19 -12.55 16 17 C 0.02 0.55 0.95 -155.66 -0.15 0.40 16 18 C -0.60 -17.00 7.77 -34.44 -0.27 -17.27 16 19 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 20 C 0.04 1.22 5.42 -17.82 -0.10 1.13 16 21 N -0.89 -26.24 13.61 55.43 0.75 -25.48 16 22 Si 1.06 25.68 29.91 -169.99 -5.08 20.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C -0.19 -4.26 9.93 -26.73 -0.27 -4.52 16 27 C -0.16 -3.83 9.05 -26.73 -0.24 -4.07 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 31 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.38 1.71 9.11 45.56 0.42 2.13 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 36 H 0.14 3.41 5.50 -51.93 -0.29 3.12 16 37 H 0.10 1.99 8.11 -51.92 -0.42 1.57 16 38 H 0.28 8.05 5.97 -40.82 -0.24 7.80 16 39 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -36.52 362.60 -8.04 -44.57 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.20 Total: 8.09 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -0.02 Total: -24.88 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.44 Total: -42.28 kcal Atomic # 8 Polarization: -65.30 SS G_CDS: -3.12 Total: -68.42 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Atomic # 16 Polarization: 57.38 SS G_CDS: -0.52 Total: 56.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.52 -8.04 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365727244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.583 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds