Wall clock time and date at job start Tue Mar 31 2020 16:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00208 * 2 1 4 4 O 1.20828 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.99886 * 330.10957 * 5 3 2 7 7 C 1.54313 * 109.77867 * 91.26038 * 5 3 2 8 8 C 1.55160 * 102.86711 * 141.88496 * 7 5 3 9 9 H 1.09003 * 111.03460 * 82.39286 * 8 7 5 10 10 O 1.42898 * 111.00653 * 206.23227 * 8 7 5 11 11 C 1.54912 * 101.57978 * 324.30739 * 8 7 5 12 12 N 1.47022 * 109.88285 * 209.01358 * 5 3 2 13 13 S 1.65603 * 125.65156 * 61.67547 * 12 5 3 14 14 O 1.42098 * 104.27602 * 150.59687 * 13 12 5 15 15 O 1.42098 * 104.27231 * 22.74024 * 13 12 5 16 16 C 1.81400 * 104.44674 * 266.67138 * 13 12 5 17 17 C 1.53001 * 109.46716 * 188.10908 * 16 13 12 18 18 C 1.50697 * 115.55264 * 302.93880 * 17 16 13 19 19 H 1.08001 * 119.99752 * 99.47055 * 18 17 16 20 20 C 1.37873 * 120.00330 * 279.47325 * 18 17 16 21 21 N 1.31515 * 119.99909 * 6.30041 * 20 18 17 22 22 Si 1.86791 * 120.00386 * 186.30191 * 20 18 17 23 23 H 1.48497 * 109.47499 * 179.97438 * 22 20 18 24 24 H 1.48510 * 109.46987 * 299.99724 * 22 20 18 25 25 H 1.48507 * 109.47362 * 59.99645 * 22 20 18 26 26 C 1.53005 * 117.51592 * 88.64127 * 17 16 13 27 27 C 1.52997 * 60.00029 * 107.47742 * 26 17 16 28 28 H 1.08994 * 109.47064 * 60.00624 * 1 2 3 29 29 H 1.09003 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 300.00206 * 1 2 3 31 31 H 1.09002 * 110.91979 * 23.47093 * 7 5 3 32 32 H 1.09001 * 110.74450 * 260.21842 * 7 5 3 33 33 H 0.96695 * 114.00125 * 173.64834 * 10 8 7 34 34 H 1.08998 * 110.36862 * 278.16949 * 11 8 7 35 35 H 1.08994 * 110.45665 * 155.89295 * 11 8 7 36 36 H 1.08998 * 109.47265 * 68.11055 * 16 13 12 37 37 H 1.09003 * 109.46914 * 308.10863 * 16 13 12 38 38 H 0.97006 * 119.99627 * 354.94574 * 21 20 18 39 39 H 1.09002 * 117.49629 * 214.97078 * 26 17 16 40 40 H 1.08997 * 117.50114 * 359.97438 * 26 17 16 41 41 H 1.08995 * 117.50422 * 252.50942 * 27 26 17 42 42 H 1.09004 * 117.49864 * 107.48207 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9853 0.4074 0.5095 7 6 4.0855 1.3343 -1.4525 8 6 5.2719 2.3295 -1.3547 9 1 6.1749 1.8287 -1.0054 10 8 5.5011 2.9781 -2.6072 11 6 4.7492 3.3334 -0.2970 12 7 4.0026 2.5082 0.6701 13 16 3.7101 2.9023 2.2517 14 8 4.8147 3.7167 2.6200 15 8 3.4772 1.6526 2.8868 16 6 2.1852 3.8834 2.1991 17 6 1.9154 4.4809 3.5815 18 6 1.8085 3.4873 4.7095 19 1 2.6535 3.3159 5.3599 20 6 0.6322 2.7970 4.9111 21 7 -0.3537 2.9117 4.0483 22 14 0.4387 1.6988 6.4096 23 1 -0.9084 1.0741 6.3950 24 1 1.4773 0.6376 6.3831 25 1 0.5933 2.5120 7.6426 26 6 2.5369 5.8431 3.8965 27 6 1.0310 5.7274 3.6519 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3171 1.7152 -2.1253 32 1 4.4308 0.3535 -1.7796 33 1 6.1673 3.6780 -2.5716 34 1 4.0879 4.0645 -0.7620 35 1 5.5818 3.8355 0.1958 36 1 1.3512 3.2436 1.9107 37 1 2.2953 4.6872 1.4710 38 1 -0.2820 3.5372 3.3103 39 1 2.8685 6.0205 4.9196 40 1 3.1385 6.3137 3.1189 41 1 0.6417 6.1220 2.7135 42 1 0.3718 5.8287 4.5142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365727244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:53 Heat of formation + Delta-G solvation = -199.199444 kcal Electronic energy + Delta-G solvation = -29186.372520 eV Core-core repulsion = 25065.910434 eV Total energy + Delta-G solvation = -4120.462086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -41.92441 -39.81863 -38.95139 -38.22955 -37.65162 -37.05269 -36.58593 -34.12494 -31.86024 -30.44687 -30.01174 -28.43534 -27.12048 -24.83795 -23.22951 -22.66886 -22.28468 -21.65137 -20.12958 -19.38679 -19.01888 -18.83791 -18.20764 -17.67014 -17.26858 -17.15893 -16.95797 -16.22559 -15.88380 -15.69014 -15.19859 -15.09412 -14.95775 -14.72232 -14.56135 -14.34229 -14.21465 -13.73849 -13.55951 -13.20916 -13.18895 -13.15392 -13.10323 -12.85171 -12.72042 -12.68805 -12.44017 -12.22853 -12.07871 -11.98169 -11.88128 -11.68164 -11.55443 -11.09833 -10.65992 -10.61613 -10.49986 -10.08587 -8.68105 -6.47753 -0.84121 0.83135 1.41041 1.47061 1.55178 1.73660 1.77412 2.49618 2.73325 2.88148 2.98257 3.06081 3.14191 3.38912 3.55250 3.67031 3.75777 3.90103 4.03897 4.14109 4.21387 4.26076 4.26652 4.29979 4.32539 4.41604 4.59504 4.63250 4.67452 4.70392 4.73549 4.85074 4.92557 4.99462 5.09359 5.16107 5.24534 5.34039 5.93847 6.08225 6.48974 6.55245 6.86005 7.37966 8.71594 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.005739 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.812826 B = 4877.532648 C = 5900.003873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.433 3.567 4 O -0.519 6.519 5 C 0.157 3.843 6 H 0.133 0.867 7 C -0.100 4.100 8 C 0.114 3.886 9 H 0.109 0.891 10 O -0.563 6.563 11 C 0.068 3.932 12 N -0.999 5.999 13 S 2.639 3.361 14 O -0.976 6.976 15 O -0.977 6.977 16 C -0.556 4.556 17 C -0.016 4.016 18 C -0.610 4.610 19 H 0.044 0.956 20 C -0.001 4.001 21 N -0.912 5.912 22 Si 1.091 2.909 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.173 4.173 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.267 0.733 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.294 -3.406 -15.071 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.275 3.725 4 O -0.408 6.408 5 C 0.048 3.952 6 H 0.150 0.850 7 C -0.139 4.139 8 C 0.053 3.947 9 H 0.127 0.873 10 O -0.371 6.371 11 C -0.057 4.057 12 N -0.838 5.838 13 S 2.738 3.262 14 O -0.966 6.966 15 O -0.968 6.968 16 C -0.688 4.688 17 C -0.018 4.018 18 C -0.647 4.647 19 H 0.062 0.938 20 C -0.204 4.204 21 N -0.546 5.546 22 Si 0.913 3.087 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.210 4.210 27 C -0.200 4.200 28 H 0.093 0.907 29 H 0.158 0.842 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.255 0.745 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.128 -4.835 -13.743 16.683 hybrid contribution 0.045 2.127 -0.517 2.190 sum 8.173 -2.707 -14.261 16.658 Atomic orbital electron populations 1.23567 0.74822 1.06018 1.02107 1.86453 1.24888 1.32263 1.83178 1.24850 0.93484 0.81988 0.72215 1.90682 1.67704 1.37088 1.45326 1.21219 0.85460 0.90023 0.98477 0.84972 1.22635 0.98204 1.03345 0.89691 1.22830 0.97804 0.91244 0.82801 0.87315 1.86462 1.65346 1.55646 1.29641 1.23203 0.96604 0.95033 0.90820 1.58663 1.67809 1.28752 1.28535 1.04046 0.76242 0.74705 0.71245 1.93455 1.50437 1.71639 1.81113 1.93491 1.87179 1.42931 1.73161 1.30031 1.20309 1.13799 1.04686 1.18708 1.04186 0.88360 0.90520 1.21592 1.01487 1.26421 1.15227 0.93806 1.26959 0.92160 0.98407 1.02880 1.70828 1.35109 1.34478 1.14202 0.83307 0.76794 0.75512 0.73075 1.19846 1.20397 1.18800 1.23079 0.95313 1.00333 1.02315 1.22739 0.92923 1.02926 1.01364 0.90713 0.84216 0.94236 0.89569 0.84470 0.74451 0.90280 0.87993 0.86660 0.85884 0.92218 0.89328 0.88039 0.89299 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.35 -11.01 10.56 -51.33 -0.54 -11.55 16 3 C 0.43 14.71 6.72 71.23 0.48 15.19 16 4 O -0.52 -20.57 13.61 21.96 0.30 -20.27 16 5 C 0.16 4.30 3.21 44.59 0.14 4.45 16 6 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 7 C -0.10 -1.80 6.19 31.78 0.20 -1.60 16 8 C 0.11 1.80 4.43 31.99 0.14 1.94 16 9 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 10 O -0.56 -7.72 13.47 -148.98 -2.01 -9.73 16 11 C 0.07 1.54 6.83 86.85 0.59 2.13 16 12 N -1.00 -31.75 3.00 -488.14 -1.47 -33.22 16 13 S 2.64 115.64 4.86 -56.49 -0.27 115.37 16 14 O -0.98 -43.98 17.33 -127.65 -2.21 -46.20 16 15 O -0.98 -49.99 17.07 -127.65 -2.18 -52.17 16 16 C -0.56 -25.79 5.18 71.98 0.37 -25.42 16 17 C -0.02 -0.79 0.95 -52.93 -0.05 -0.84 16 18 C -0.61 -35.42 7.77 25.60 0.20 -35.23 16 19 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 20 C 0.00 -0.07 5.42 84.65 0.46 0.39 16 21 N -0.91 -55.05 13.61 21.45 0.29 -54.75 16 22 Si 1.09 52.26 29.91 68.60 2.05 54.31 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.17 -7.65 9.93 30.60 0.30 -7.34 16 27 C -0.16 -7.45 9.05 30.59 0.28 -7.18 16 28 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 29 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.09 1.69 7.85 -2.39 -0.02 1.67 16 32 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.40 2.03 9.11 -74.06 -0.67 1.35 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 2.12 7.68 -2.39 -0.02 2.10 16 36 H 0.12 5.92 5.50 -2.39 -0.01 5.91 16 37 H 0.12 4.89 8.11 -2.39 -0.02 4.87 16 38 H 0.27 16.15 5.97 -92.70 -0.55 15.59 16 39 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.09 3.72 8.14 -2.39 -0.02 3.71 16 42 H 0.07 3.55 8.14 -2.38 -0.02 3.53 16 Total: -1.00 -81.29 362.60 -1.14 -82.43 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.59 Total: 27.33 kcal Atomic # 6 Polarization: -55.86 SS G_CDS: 4.31 Total: -51.55 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.17 Total: -87.97 kcal Atomic # 8 Polarization: -133.27 SS G_CDS: -6.64 Total: -139.92 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.05 Total: 54.31 kcal Atomic # 16 Polarization: 115.64 SS G_CDS: -0.27 Total: 115.37 kcal Total: -81.29 -1.14 -82.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365727244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.766 kcal (2) G-P(sol) polarization free energy of solvation -81.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds