Wall clock time and date at job start Tue Mar 31 2020 16:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99281 * 2 1 4 4 O 1.20823 * 120.00461 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47347 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47461 * 179.97438 * 6 5 3 8 8 C 1.37101 * 120.00013 * 93.50418 * 7 6 5 9 9 H 1.07994 * 119.99890 * 214.63521 * 8 7 6 10 10 C 1.38952 * 119.99819 * 34.36121 * 8 7 6 11 11 N 1.31405 * 119.99700 * 205.46059 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 25.45586 * 10 8 7 13 13 H 1.48495 * 109.47391 * 5.01672 * 12 10 8 14 14 H 1.48502 * 109.46874 * 125.01869 * 12 10 8 15 15 H 1.48500 * 109.47043 * 245.01609 * 12 10 8 16 16 C 1.34782 * 119.99997 * 273.50633 * 7 6 5 17 17 O 1.21287 * 119.99905 * 359.97438 * 16 7 6 18 18 C 1.50693 * 119.99786 * 179.97438 * 16 7 6 19 19 C 1.53002 * 109.47259 * 180.02562 * 18 16 7 20 20 H 1.08998 * 109.64251 * 305.43081 * 19 18 16 21 21 C 1.53881 * 109.64926 * 184.99884 * 19 18 16 22 22 C 1.55049 * 106.62049 * 192.96490 * 21 19 18 23 23 S 1.83286 * 102.56763 * 42.43859 * 22 21 19 24 24 O 1.42101 * 109.35607 * 90.18282 * 23 22 21 25 25 O 1.42101 * 109.35420 * 223.25156 * 23 22 21 26 26 C 1.54171 * 109.64628 * 65.72335 * 19 18 16 27 27 H 1.08999 * 109.47399 * 299.99202 * 1 2 3 28 28 H 1.08989 * 109.47807 * 60.00039 * 1 2 3 29 29 H 1.09009 * 109.46629 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46838 * 59.99552 * 5 3 2 31 31 H 1.09001 * 109.46859 * 300.00169 * 5 3 2 32 32 H 1.09003 * 109.46567 * 60.00183 * 6 5 3 33 33 H 1.08998 * 109.47192 * 300.00468 * 6 5 3 34 34 H 0.97002 * 120.00648 * 359.97438 * 11 10 8 35 35 H 1.09001 * 109.47507 * 300.00016 * 18 16 7 36 36 H 1.08997 * 109.47304 * 59.99989 * 18 16 7 37 37 H 1.09000 * 110.02766 * 312.26040 * 21 19 18 38 38 H 1.09000 * 110.02583 * 73.67871 * 21 19 18 39 39 H 1.09007 * 110.78424 * 160.70367 * 22 21 19 40 40 H 1.08995 * 110.79548 * 284.16599 * 22 21 19 41 41 H 1.08993 * 110.32198 * 266.66882 * 26 19 18 42 42 H 1.09009 * 110.31355 * 28.86615 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4031 2.2094 0.0005 5 6 3.5662 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 7 5.4629 2.8191 -0.0011 8 6 6.1437 2.9271 -1.1862 9 1 7.1064 2.4514 -1.3011 10 6 5.5925 3.6438 -2.2412 11 7 5.9383 3.3634 -3.4776 12 14 4.3599 5.0058 -1.9020 13 1 4.2322 5.2042 -0.4359 14 1 4.8283 6.2658 -2.5331 15 1 3.0391 4.6302 -2.4675 16 6 6.1396 2.7836 1.1641 17 8 5.5372 2.6885 2.2125 18 6 7.6445 2.8620 1.1640 19 6 8.1584 2.8007 2.6038 20 1 7.6784 3.5785 3.1977 21 6 9.6834 3.0060 2.6181 22 6 10.1716 2.6056 4.0342 23 16 9.2123 1.0804 4.3703 24 8 9.9466 -0.0478 3.9149 25 8 8.7241 1.1155 5.7043 26 6 7.8399 1.4192 3.2095 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7808 0.8892 32 1 3.6105 3.2365 0.8890 33 1 3.6098 3.2362 -0.8910 34 1 6.5786 2.6564 -3.6537 35 1 8.0520 2.0249 0.5972 36 1 7.9594 3.7991 0.7050 37 1 10.1527 2.3699 1.8676 38 1 9.9211 4.0517 2.4231 39 1 11.2415 2.3967 4.0298 40 1 9.9309 3.3819 4.7603 41 1 6.8907 1.4501 3.7443 42 1 7.8100 0.6607 2.4271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535417215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:18 Heat of formation + Delta-G solvation = -215.598069 kcal Electronic energy + Delta-G solvation = -27426.481933 eV Core-core repulsion = 23305.308750 eV Total energy + Delta-G solvation = -4121.173184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68933 -40.78894 -38.17322 -37.99691 -37.58413 -37.01193 -36.67489 -34.26394 -32.86287 -31.61444 -29.34347 -28.52806 -26.39899 -26.03229 -24.62870 -22.06462 -21.56574 -20.84691 -19.79063 -19.31910 -18.60426 -18.13206 -17.83759 -17.75469 -17.49989 -17.22993 -16.75482 -16.56662 -16.15491 -15.85015 -15.20672 -15.15962 -14.84771 -14.75032 -14.47086 -14.18554 -14.03812 -13.77863 -13.70441 -13.25164 -13.18908 -13.06187 -13.00274 -12.91483 -12.83744 -12.66601 -12.22733 -12.16174 -11.91345 -11.86565 -11.74152 -11.66540 -11.54549 -11.49264 -11.12338 -11.01866 -10.44029 -9.90917 -8.89458 -6.13805 -0.81664 1.02787 1.36744 1.42609 1.56258 1.60107 1.68256 1.96654 2.27048 2.61696 2.73866 2.98372 3.12565 3.52402 3.66104 3.75220 3.78158 3.85164 3.99749 4.04502 4.14506 4.26552 4.28333 4.35174 4.40864 4.53585 4.61763 4.64881 4.67859 4.73519 4.80305 4.91242 4.98563 5.03035 5.23036 5.23615 5.31321 5.66600 5.82854 6.29337 6.58801 7.02354 7.35721 7.83260 8.48671 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.003838 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.101912 B = 7293.793946 C = 8973.334898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.117 4.117 6 C 0.124 3.876 7 N -0.471 5.471 8 C -0.416 4.416 9 H 0.091 0.909 10 C 0.003 3.997 11 N -0.890 5.890 12 Si 1.063 2.937 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.285 1.285 16 C 0.469 3.531 17 O -0.611 6.611 18 C -0.107 4.107 19 C -0.067 4.067 20 H 0.095 0.905 21 C -0.115 4.115 22 C -0.555 4.555 23 S 2.387 3.613 24 O -0.980 6.980 25 O -0.987 6.987 26 C -0.574 4.574 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.274 0.726 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -2.448 8.341 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.156 4.156 6 C 0.000 4.000 7 N -0.192 5.192 8 C -0.544 4.544 9 H 0.108 0.892 10 C -0.204 4.204 11 N -0.524 5.524 12 Si 0.889 3.111 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.212 1.212 16 C 0.260 3.740 17 O -0.497 6.497 18 C -0.147 4.147 19 C -0.087 4.087 20 H 0.114 0.886 21 C -0.154 4.154 22 C -0.688 4.688 23 S 2.576 3.424 24 O -0.977 6.977 25 O -0.984 6.984 26 C -0.705 4.705 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.150 0.850 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.106 -1.910 8.726 9.177 hybrid contribution 0.173 -0.641 -0.320 0.737 sum 2.278 -2.551 8.407 9.076 Atomic orbital electron populations 1.23610 0.74530 1.05958 1.02634 1.86509 1.25354 1.32274 1.83675 1.23797 0.92062 0.81417 0.71060 1.90634 1.67849 1.37338 1.46898 1.21663 0.87070 1.00099 1.06738 1.21202 0.83257 0.94464 1.01038 1.43874 1.03739 1.65191 1.06365 1.20356 1.07168 1.36546 0.90295 0.89151 1.26791 1.01586 1.00001 0.92055 1.70857 1.30053 1.31491 1.19994 0.83708 0.75021 0.75887 0.76435 1.19860 1.20649 1.21198 1.21199 0.91642 0.78706 0.82442 1.90529 1.71522 1.55745 1.31923 1.21464 0.90687 1.05517 0.97022 1.21416 0.96456 0.94634 0.96241 0.88632 1.22386 0.91776 1.07208 0.94020 1.30416 1.14051 1.17990 1.06337 1.08912 0.78874 0.79001 0.75578 1.93545 1.71108 1.50105 1.82960 1.93531 1.80809 1.88202 1.35892 1.30484 1.17752 1.06290 1.15927 0.91793 0.91993 0.84519 0.86678 0.86671 0.91342 0.92631 0.91522 0.88556 0.87640 0.88102 0.85893 0.81926 0.82437 0.84997 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.55 113.37 1.20 1.74 16 2 O -0.36 -10.65 10.57 -51.46 -0.54 -11.20 16 3 C 0.47 16.70 7.96 71.24 0.57 17.27 16 4 O -0.54 -21.67 15.73 21.97 0.35 -21.32 16 5 C -0.12 -4.23 6.12 29.85 0.18 -4.05 16 6 C 0.12 5.28 3.05 86.38 0.26 5.54 16 7 N -0.47 -20.15 2.23 -635.56 -1.42 -21.57 16 8 C -0.42 -19.04 8.98 84.04 0.75 -18.28 16 9 H 0.09 4.14 7.13 -2.91 -0.02 4.12 16 10 C 0.00 0.13 5.25 84.93 0.45 0.58 16 11 N -0.89 -46.47 13.69 21.66 0.30 -46.18 16 12 Si 1.06 47.38 25.43 68.60 1.74 49.13 16 13 H -0.27 -11.98 6.53 99.48 0.65 -11.33 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 16 C 0.47 18.34 7.38 87.65 0.65 18.98 16 17 O -0.61 -25.80 14.16 -3.05 -0.04 -25.85 16 18 C -0.11 -3.11 3.74 29.85 0.11 -3.00 16 19 C -0.07 -1.52 2.24 -10.10 -0.02 -1.54 16 20 H 0.10 2.22 7.95 -2.39 -0.02 2.21 16 21 C -0.12 -1.63 5.80 31.59 0.18 -1.45 16 22 C -0.55 -6.83 7.31 72.68 0.53 -6.30 16 23 S 2.39 52.12 6.10 -56.49 -0.34 51.77 16 24 O -0.98 -27.82 18.15 -127.47 -2.31 -30.13 16 25 O -0.99 -29.27 18.15 -127.47 -2.31 -31.59 16 26 C -0.57 -13.87 5.83 72.38 0.42 -13.45 16 27 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.14 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.12 4.07 8.14 -2.38 -0.02 4.05 16 31 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.07 3.03 7.48 -2.39 -0.02 3.01 16 33 H 0.06 2.51 3.53 -2.39 -0.01 2.50 16 34 H 0.27 14.00 8.73 -92.71 -0.81 13.19 16 35 H 0.10 2.66 7.53 -2.39 -0.02 2.64 16 36 H 0.11 2.94 8.10 -2.39 -0.02 2.92 16 37 H 0.10 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.16 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.13 3.67 7.30 -2.39 -0.02 3.65 16 42 H 0.13 3.15 7.81 -2.38 -0.02 3.13 16 Total: -1.00 -72.54 357.92 1.64 -70.90 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.94 Total: 19.99 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.28 Total: -3.97 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.12 Total: -67.75 kcal Atomic # 8 Polarization: -115.22 SS G_CDS: -4.87 Total: -120.08 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.74 Total: 49.13 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.34 Total: 51.77 kcal Total: -72.54 1.64 -70.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535417215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.694 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds