Wall clock time and date at job start Tue Mar 31 2020 17:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99675 * 2 1 4 4 O 1.20823 * 120.00063 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99698 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47021 * 180.02562 * 5 3 2 7 7 C 1.36784 * 120.00042 * 274.12337 * 6 5 3 8 8 H 1.07994 * 120.00212 * 132.27223 * 7 6 5 9 9 C 1.39077 * 119.99921 * 312.27272 * 7 6 5 10 10 N 1.31352 * 120.00083 * 2.95287 * 9 7 6 11 11 Si 1.86795 * 120.00073 * 182.95356 * 9 7 6 12 12 H 1.48499 * 109.47378 * 89.99738 * 11 9 7 13 13 H 1.48496 * 109.47310 * 209.99751 * 11 9 7 14 14 H 1.48502 * 109.47305 * 329.99720 * 11 9 7 15 15 C 1.34778 * 119.99740 * 94.11921 * 6 5 3 16 16 O 1.21706 * 120.00179 * 4.02687 * 15 6 5 17 17 C 1.46806 * 119.99602 * 184.02585 * 15 6 5 18 18 O 1.34955 * 125.14798 * 354.19312 * 17 15 6 19 19 C 1.34734 * 110.86388 * 180.02562 * 18 17 15 20 20 C 1.38999 * 133.22452 * 179.97438 * 19 18 17 21 21 C 1.37820 * 119.86039 * 180.02562 * 20 19 18 22 22 C 1.38837 * 120.74719 * 359.97438 * 21 20 19 23 23 C 1.36620 * 120.44340 * 359.97438 * 22 21 20 24 24 C 1.39734 * 119.70783 * 0.02562 * 23 22 21 25 25 C 1.35966 * 125.14229 * 174.22645 * 17 15 6 26 26 C 1.50693 * 126.96421 * 359.95178 * 25 17 15 27 27 O 1.42909 * 109.47057 * 270.01955 * 26 25 17 28 28 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47125 * 299.99313 * 1 2 3 30 30 H 1.08996 * 109.47069 * 59.99910 * 1 2 3 31 31 H 1.08998 * 109.47274 * 60.00523 * 5 3 2 32 32 H 1.09001 * 109.47802 * 299.99936 * 5 3 2 33 33 H 0.97000 * 120.00139 * 180.02562 * 10 9 7 34 34 H 1.08004 * 120.07348 * 0.04159 * 20 19 18 35 35 H 1.07995 * 119.62752 * 180.27891 * 21 20 19 36 36 H 1.08002 * 119.77790 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.14907 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47554 * 30.01600 * 26 25 17 39 39 H 1.08998 * 109.47284 * 150.02027 * 26 25 17 40 40 H 0.96701 * 113.99964 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.0943 3.3602 -1.1802 8 1 3.6529 4.3404 -1.2831 9 6 4.7773 2.7895 -2.2489 10 7 5.2641 1.5741 -2.1435 11 14 5.0025 3.7515 -3.8342 12 1 6.2649 4.5306 -3.7654 13 1 5.0641 2.8095 -4.9804 14 1 3.8576 4.6794 -4.0171 15 6 4.2526 3.3020 1.1656 16 8 4.2237 2.6780 2.2101 17 6 4.5828 4.7325 1.1740 18 8 4.7534 5.4969 0.0750 19 6 5.0488 6.7668 0.4149 20 6 5.3103 7.9140 -0.3251 21 6 5.5883 9.0990 0.3215 22 6 5.6102 9.1628 1.7082 23 6 5.3553 8.0486 2.4565 24 6 5.0713 6.8373 1.8205 25 6 4.7637 5.4874 2.2903 26 6 4.6648 5.0266 3.7216 27 8 3.3208 5.1844 4.1811 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9564 0.7807 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 5.7409 1.1762 -2.8887 34 1 5.2955 7.8770 -1.4044 35 1 5.7865 9.9891 -0.2571 36 1 5.8303 10.0996 2.1986 37 1 5.3732 8.1037 3.5349 38 1 4.9497 3.9764 3.7858 39 1 5.3333 5.6230 4.3423 40 1 3.1831 4.9065 5.0970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586664757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:21 Heat of formation + Delta-G solvation = -121.580312 kcal Electronic energy + Delta-G solvation = -29283.195765 eV Core-core repulsion = 25030.655546 eV Total energy + Delta-G solvation = -4252.540219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.96996 -39.80998 -38.52362 -37.41612 -36.50040 -35.79055 -34.92789 -32.54621 -31.79881 -30.18382 -29.67825 -28.56211 -26.68726 -25.96782 -24.81488 -23.26825 -22.23996 -20.82043 -19.83753 -19.52561 -18.17052 -17.18274 -16.97125 -16.94985 -16.45403 -15.92194 -15.70493 -15.57916 -15.28364 -14.92729 -14.67526 -14.15962 -14.12731 -13.72014 -13.62635 -13.22222 -13.12515 -12.82137 -12.67726 -12.49565 -11.93248 -11.78733 -11.72883 -11.48487 -11.45096 -11.31360 -11.08653 -10.75795 -10.63152 -10.47576 -10.24281 -9.87491 -9.74683 -9.67094 -9.29299 -8.94879 -8.30543 -7.95127 -7.66949 -6.57973 -4.42717 1.02451 1.65251 2.26367 3.04809 3.07088 3.09265 3.12843 3.19989 3.30935 3.91904 3.95759 4.11481 4.35173 4.74462 4.85232 4.98147 5.05714 5.13605 5.35307 5.43835 5.45013 5.51751 5.61387 5.63398 5.66914 5.76897 5.86710 5.90724 6.06732 6.21418 6.25289 6.53900 6.55133 6.65588 6.72529 6.78574 6.91947 7.00543 7.36312 7.51537 7.60219 7.99528 8.16986 8.55277 8.79841 9.02770 9.47616 10.42280 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.005290 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.096028 B = 5291.446676 C = 7139.740392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.447 3.553 4 O -0.504 6.504 5 C 0.109 3.891 6 N -0.404 5.404 7 C -0.325 4.325 8 H 0.103 0.897 9 C 0.050 3.950 10 N -0.870 5.870 11 Si 0.928 3.072 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.552 3.448 16 O -0.569 6.569 17 C 0.070 3.930 18 O -0.141 6.141 19 C 0.048 3.952 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.069 4.069 24 C -0.118 4.118 25 C -0.150 4.150 26 C 0.149 3.851 27 O -0.564 6.564 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.278 0.722 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 5.692 4.636 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.289 3.711 4 O -0.390 6.390 5 C -0.016 4.016 6 N -0.120 5.120 7 C -0.453 4.453 8 H 0.120 0.880 9 C -0.156 4.156 10 N -0.507 5.507 11 Si 0.753 3.247 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.341 3.659 16 O -0.454 6.454 17 C 0.018 3.982 18 O -0.039 6.039 19 C -0.001 4.001 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.162 4.162 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.154 4.154 26 C 0.072 3.928 27 O -0.369 6.369 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.209 5.623 4.087 6.954 hybrid contribution -0.097 0.360 -0.308 0.484 sum -0.306 5.983 3.778 7.083 Atomic orbital electron populations 1.23093 0.78051 1.02621 1.02016 1.86541 1.22217 1.34692 1.84973 1.25164 0.93423 0.80910 0.71649 1.90602 1.67019 1.36377 1.45047 1.21480 0.84600 0.87009 1.08494 1.42906 1.54616 1.09102 1.05408 1.19698 1.34043 1.02316 0.89228 0.88008 1.25626 0.93682 0.95917 1.00393 1.69399 1.34538 1.13518 1.33275 0.85888 0.79494 0.79496 0.79817 1.19599 1.20493 1.18947 1.17110 0.80918 0.83162 0.84739 1.90685 1.58409 1.64146 1.32182 1.22076 1.00124 0.92383 0.83604 1.84729 1.70595 1.16288 1.32332 1.20035 1.00931 0.85907 0.93258 1.19971 1.03446 0.88999 0.99859 1.20843 1.00184 0.96550 0.94513 1.20644 1.03462 0.98194 0.93896 1.20236 0.98328 0.90579 0.99620 1.19744 1.05125 0.93962 0.93111 1.20767 1.08592 0.91162 0.94846 1.20343 0.83330 1.00599 0.88507 1.86573 1.28707 1.88713 1.32928 0.88871 0.92537 0.92455 0.81857 0.87752 0.91131 0.85106 0.85250 0.85827 0.86012 0.90133 0.93684 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.13 10.57 -39.27 -0.41 -7.54 16 3 C 0.45 10.26 8.00 36.00 0.29 10.54 16 4 O -0.50 -12.93 16.11 -18.75 -0.30 -13.23 16 5 C 0.11 2.56 5.72 -5.19 -0.03 2.53 16 6 N -0.40 -10.39 2.02 -117.54 -0.24 -10.63 16 7 C -0.33 -8.46 7.57 -15.03 -0.11 -8.57 16 8 H 0.10 2.72 6.26 -52.49 -0.33 2.39 16 9 C 0.05 1.23 5.39 -17.45 -0.09 1.14 16 10 N -0.87 -21.66 10.88 55.50 0.60 -21.06 16 11 Si 0.93 19.58 29.55 -169.99 -5.02 14.56 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 15 C 0.55 14.10 7.60 -12.80 -0.10 14.00 16 16 O -0.57 -14.59 14.10 5.18 0.07 -14.52 16 17 C 0.07 1.66 6.78 -36.93 -0.25 1.41 16 18 O -0.14 -3.25 7.49 2.70 0.02 -3.23 16 19 C 0.05 0.95 7.41 -38.35 -0.28 0.66 16 20 C -0.10 -1.67 10.07 -39.45 -0.40 -2.07 16 21 C -0.10 -1.34 10.01 -39.51 -0.40 -1.74 16 22 C -0.14 -1.85 9.98 -39.94 -0.40 -2.25 16 23 C -0.07 -1.05 10.06 -39.61 -0.40 -1.45 16 24 C -0.12 -2.25 6.37 -105.19 -0.67 -2.92 16 25 C -0.15 -3.16 6.02 -102.24 -0.62 -3.77 16 26 C 0.15 2.69 7.04 36.00 0.25 2.94 16 27 O -0.56 -10.11 13.64 -35.23 -0.48 -10.59 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.16 3.94 5.32 -51.93 -0.28 3.66 16 32 H 0.10 2.35 7.25 -51.93 -0.38 1.97 16 33 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.08 1.54 6.27 -51.93 -0.33 1.21 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.37 4.50 9.12 45.56 0.42 4.91 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -32.49 351.57 -6.01 -38.49 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.41 Total: 10.37 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -2.14 Total: 12.08 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.37 Total: -31.69 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.10 Total: -49.10 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.49 -6.01 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586664757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.086 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds