Wall clock time and date at job start Tue Mar 31 2020 17:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99675 * 2 1 4 4 O 1.20823 * 120.00063 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99698 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47021 * 180.02562 * 5 3 2 7 7 C 1.36784 * 120.00042 * 274.12337 * 6 5 3 8 8 H 1.07994 * 120.00212 * 132.27223 * 7 6 5 9 9 C 1.39077 * 119.99921 * 312.27272 * 7 6 5 10 10 N 1.31352 * 120.00083 * 2.95287 * 9 7 6 11 11 Si 1.86795 * 120.00073 * 182.95356 * 9 7 6 12 12 H 1.48499 * 109.47378 * 89.99738 * 11 9 7 13 13 H 1.48496 * 109.47310 * 209.99751 * 11 9 7 14 14 H 1.48502 * 109.47305 * 329.99720 * 11 9 7 15 15 C 1.34778 * 119.99740 * 94.11921 * 6 5 3 16 16 O 1.21706 * 120.00179 * 4.02687 * 15 6 5 17 17 C 1.46806 * 119.99602 * 184.02585 * 15 6 5 18 18 O 1.34955 * 125.14798 * 354.19312 * 17 15 6 19 19 C 1.34734 * 110.86388 * 180.02562 * 18 17 15 20 20 C 1.38999 * 133.22452 * 179.97438 * 19 18 17 21 21 C 1.37820 * 119.86039 * 180.02562 * 20 19 18 22 22 C 1.38837 * 120.74719 * 359.97438 * 21 20 19 23 23 C 1.36620 * 120.44340 * 359.97438 * 22 21 20 24 24 C 1.39734 * 119.70783 * 0.02562 * 23 22 21 25 25 C 1.35966 * 125.14229 * 174.22645 * 17 15 6 26 26 C 1.50693 * 126.96421 * 359.95178 * 25 17 15 27 27 O 1.42909 * 109.47057 * 270.01955 * 26 25 17 28 28 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47125 * 299.99313 * 1 2 3 30 30 H 1.08996 * 109.47069 * 59.99910 * 1 2 3 31 31 H 1.08998 * 109.47274 * 60.00523 * 5 3 2 32 32 H 1.09001 * 109.47802 * 299.99936 * 5 3 2 33 33 H 0.97000 * 120.00139 * 180.02562 * 10 9 7 34 34 H 1.08004 * 120.07348 * 0.04159 * 20 19 18 35 35 H 1.07995 * 119.62752 * 180.27891 * 21 20 19 36 36 H 1.08002 * 119.77790 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.14907 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47554 * 30.01600 * 26 25 17 39 39 H 1.08998 * 109.47284 * 150.02027 * 26 25 17 40 40 H 0.96701 * 113.99964 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.0943 3.3602 -1.1802 8 1 3.6529 4.3404 -1.2831 9 6 4.7773 2.7895 -2.2489 10 7 5.2641 1.5741 -2.1435 11 14 5.0025 3.7515 -3.8342 12 1 6.2649 4.5306 -3.7654 13 1 5.0641 2.8095 -4.9804 14 1 3.8576 4.6794 -4.0171 15 6 4.2526 3.3020 1.1656 16 8 4.2237 2.6780 2.2101 17 6 4.5828 4.7325 1.1740 18 8 4.7534 5.4969 0.0750 19 6 5.0488 6.7668 0.4149 20 6 5.3103 7.9140 -0.3251 21 6 5.5883 9.0990 0.3215 22 6 5.6102 9.1628 1.7082 23 6 5.3553 8.0486 2.4565 24 6 5.0713 6.8373 1.8205 25 6 4.7637 5.4874 2.2903 26 6 4.6648 5.0266 3.7216 27 8 3.3208 5.1844 4.1811 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9564 0.7807 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 5.7409 1.1762 -2.8887 34 1 5.2955 7.8770 -1.4044 35 1 5.7865 9.9891 -0.2571 36 1 5.8303 10.0996 2.1986 37 1 5.3732 8.1037 3.5349 38 1 4.9497 3.9764 3.7858 39 1 5.3333 5.6230 4.3423 40 1 3.1831 4.9065 5.0970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586664757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:21 Heat of formation + Delta-G solvation = -143.873328 kcal Electronic energy + Delta-G solvation = -29284.162463 eV Core-core repulsion = 25030.655546 eV Total energy + Delta-G solvation = -4253.506917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 6.93 seconds Orbital eigenvalues (eV) -43.44691 -41.59073 -40.29556 -38.69977 -37.96460 -37.50249 -36.78944 -34.00390 -33.69147 -31.47554 -31.16849 -30.08436 -28.12861 -27.61904 -26.54735 -24.69848 -23.56050 -22.43739 -21.50686 -21.12567 -19.86109 -18.79918 -18.67719 -18.42107 -17.91797 -17.46228 -17.29272 -17.18843 -16.93053 -16.62191 -16.38612 -15.61859 -15.43517 -15.35771 -15.02523 -14.79263 -14.53237 -14.44925 -14.32774 -13.86899 -13.52352 -13.23251 -13.14544 -13.05562 -12.95423 -12.87356 -12.70048 -12.49999 -12.14792 -11.85969 -11.81081 -11.62167 -11.50488 -11.08913 -11.05383 -10.65305 -9.78500 -9.57354 -9.15740 -8.45579 -6.37745 -0.39053 0.42124 0.80452 1.21930 1.37667 1.38523 1.47984 1.57998 1.75424 2.16028 2.32448 2.66588 2.76243 2.95386 3.43679 3.52979 3.78133 3.91807 4.02804 4.11038 4.17149 4.26731 4.30249 4.32708 4.39721 4.40337 4.46793 4.59766 4.62728 4.79691 4.88096 4.92208 5.16199 5.29939 5.37022 5.41671 5.44425 5.50085 5.64477 5.74855 6.16124 6.25124 6.77542 6.87850 6.89725 7.13082 7.57398 8.55493 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.005290 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.096028 B = 5291.446676 C = 7139.740392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.452 3.548 4 O -0.538 6.538 5 C 0.107 3.893 6 N -0.417 5.417 7 C -0.343 4.343 8 H 0.085 0.915 9 C 0.015 3.985 10 N -0.889 5.889 11 Si 0.985 3.015 12 H -0.266 1.266 13 H -0.266 1.266 14 H -0.268 1.268 15 C 0.540 3.460 16 O -0.587 6.587 17 C 0.012 3.988 18 O -0.168 6.168 19 C 0.016 3.984 20 C -0.127 4.127 21 C -0.077 4.077 22 C -0.130 4.130 23 C -0.071 4.071 24 C -0.145 4.145 25 C -0.139 4.139 26 C 0.151 3.849 27 O -0.584 6.584 28 H 0.141 0.859 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.160 0.840 32 H 0.107 0.893 33 H 0.284 0.716 34 H 0.141 0.859 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.148 0.852 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 8.542 4.911 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.427 6.427 5 C -0.017 4.017 6 N -0.133 5.133 7 C -0.470 4.470 8 H 0.102 0.898 9 C -0.189 4.189 10 N -0.526 5.526 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.190 1.190 14 H -0.192 1.192 15 C 0.331 3.669 16 O -0.474 6.474 17 C -0.039 4.039 18 O -0.069 6.069 19 C -0.032 4.032 20 C -0.145 4.145 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.089 4.089 24 C -0.146 4.146 25 C -0.143 4.143 26 C 0.074 3.926 27 O -0.393 6.393 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.166 0.834 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.318 8.435 4.385 9.512 hybrid contribution -0.284 -0.367 -0.280 0.542 sum 0.034 8.068 4.106 9.052 Atomic orbital electron populations 1.23535 0.75164 1.05785 1.02021 1.86506 1.24913 1.32430 1.84114 1.24938 0.93209 0.81381 0.70905 1.90576 1.67632 1.37671 1.46804 1.21445 0.85511 0.86546 1.08247 1.43055 1.55122 1.09630 1.05520 1.19634 1.35244 1.02196 0.89927 0.89779 1.26343 0.93020 0.96722 1.02789 1.69458 1.34663 1.14189 1.34283 0.85050 0.79246 0.78425 0.76541 1.19064 1.19033 1.19246 1.17498 0.80514 0.84374 0.84562 1.90622 1.59341 1.65080 1.32395 1.21866 1.04831 0.92206 0.85025 1.84589 1.71799 1.17863 1.32618 1.20735 1.02104 0.85609 0.94751 1.20402 1.04550 0.88893 1.00675 1.21471 0.96248 0.96508 0.95220 1.21242 1.00629 0.99082 0.93806 1.20667 0.97374 0.89573 1.01275 1.19978 1.07198 0.94470 0.92959 1.21369 1.05414 0.92062 0.95456 1.20371 0.84179 1.00241 0.87783 1.86501 1.28670 1.88876 1.35233 0.84081 0.92576 0.92513 0.82386 0.87491 0.90548 0.84146 0.80665 0.81067 0.83441 0.92011 0.89562 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -14.26 10.57 -51.45 -0.54 -14.80 16 3 C 0.45 21.70 8.00 71.23 0.57 22.27 16 4 O -0.54 -28.92 16.11 21.97 0.35 -28.56 16 5 C 0.11 5.35 5.72 85.63 0.49 5.84 16 6 N -0.42 -22.90 2.02 -644.01 -1.30 -24.20 16 7 C -0.34 -18.92 7.57 84.12 0.64 -18.29 16 8 H 0.08 4.86 6.26 -2.91 -0.02 4.84 16 9 C 0.01 0.77 5.39 84.97 0.46 1.22 16 10 N -0.89 -45.72 10.88 21.69 0.24 -45.48 16 11 Si 0.99 41.00 29.55 68.60 2.03 43.03 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 C 0.54 29.63 7.60 86.48 0.66 30.28 16 16 O -0.59 -32.14 14.10 -4.37 -0.06 -32.21 16 17 C 0.01 0.59 6.78 23.98 0.16 0.75 16 18 O -0.17 -8.30 7.49 -13.27 -0.10 -8.40 16 19 C 0.02 0.65 7.41 23.07 0.17 0.83 16 20 C -0.13 -3.88 10.07 22.35 0.23 -3.65 16 21 C -0.08 -1.65 10.01 22.31 0.22 -1.43 16 22 C -0.13 -2.66 9.98 22.03 0.22 -2.44 16 23 C -0.07 -1.92 10.06 22.25 0.22 -1.69 16 24 C -0.15 -5.47 6.37 -20.23 -0.13 -5.60 16 25 C -0.14 -6.05 6.02 -18.32 -0.11 -6.16 16 26 C 0.15 5.48 7.04 71.23 0.50 5.98 16 27 O -0.58 -20.85 13.64 -148.98 -2.03 -22.88 16 28 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 30 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.16 8.04 5.32 -2.39 -0.01 8.03 16 32 H 0.11 5.15 7.25 -2.39 -0.02 5.13 16 33 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.06 2.45 6.27 -2.39 -0.01 2.44 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.40 9.27 9.12 -74.06 -0.68 8.60 16 Total: -1.00 -76.99 351.57 4.52 -72.47 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.44 Total: 31.09 kcal Atomic # 6 Polarization: 24.44 SS G_CDS: 5.50 Total: 29.94 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -1.06 Total: -69.68 kcal Atomic # 8 Polarization: -104.48 SS G_CDS: -2.38 Total: -106.86 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -76.99 4.52 -72.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586664757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.401 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.93 seconds