Wall clock time and date at job start Tue Mar 31 2020 17:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 110.54426 * 2 1 4 4 O 1.42105 * 110.53904 * 223.25397 * 2 1 3 5 5 N 1.65593 * 104.45167 * 111.62860 * 2 1 3 6 6 C 1.47429 * 125.65108 * 84.51125 * 5 2 1 7 7 C 1.54910 * 104.83097 * 204.09193 * 6 5 2 8 8 C 1.55152 * 101.58240 * 322.99040 * 7 6 5 9 9 C 1.47023 * 125.64638 * 264.46669 * 5 2 1 10 10 H 1.09003 * 109.88245 * 59.40977 * 9 5 2 11 11 C 1.50703 * 109.88408 * 298.39328 * 9 5 2 12 12 O 1.20820 * 120.00058 * 333.07822 * 11 9 5 13 13 O 1.34227 * 119.99624 * 153.07875 * 11 9 5 14 14 C 1.45206 * 116.99721 * 180.02562 * 13 11 9 15 15 C 1.52992 * 109.47076 * 179.97438 * 14 13 11 16 16 C 1.50699 * 113.00238 * 303.34277 * 15 14 13 17 17 H 1.08008 * 120.00241 * 108.70926 * 16 15 14 18 18 C 1.37884 * 120.00219 * 288.71741 * 16 15 14 19 19 N 1.31512 * 119.99679 * 1.97862 * 18 16 15 20 20 Si 1.86800 * 119.99979 * 182.25353 * 18 16 15 21 21 H 1.48499 * 109.47105 * 269.72368 * 20 18 16 22 22 H 1.48496 * 109.47246 * 29.72180 * 20 18 16 23 23 H 1.48495 * 109.47095 * 149.72275 * 20 18 16 24 24 C 1.54032 * 113.92948 * 75.27829 * 15 14 13 25 25 O 1.44172 * 85.51859 * 91.65942 * 24 15 14 26 26 C 1.44179 * 93.34134 * 24.19715 * 25 24 15 27 27 H 1.09008 * 109.46687 * 313.31478 * 1 2 3 28 28 H 1.08997 * 109.47518 * 73.31441 * 1 2 3 29 29 H 1.08995 * 109.46841 * 193.32023 * 1 2 3 30 30 H 1.08998 * 110.36393 * 322.92865 * 6 5 2 31 31 H 1.09001 * 110.36799 * 85.25147 * 6 5 2 32 32 H 1.08998 * 111.00113 * 81.06573 * 7 6 5 33 33 H 1.09004 * 111.00137 * 204.91060 * 7 6 5 34 34 H 1.09000 * 110.71849 * 277.13348 * 8 7 6 35 35 H 1.08998 * 110.71823 * 153.86869 * 8 7 6 36 36 H 1.09003 * 109.46808 * 59.99704 * 14 13 11 37 37 H 1.08993 * 109.47162 * 300.00151 * 14 13 11 38 38 H 0.96997 * 120.00061 * 359.96345 * 19 18 16 39 39 H 1.08999 * 113.86547 * 205.80615 * 24 15 14 40 40 H 1.08998 * 113.86387 * 337.51248 * 24 15 14 41 41 H 1.09001 * 113.86376 * 221.66268 * 26 25 24 42 42 H 1.08991 * 113.86743 * 89.95368 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2273 -0.5910 1.4906 6 6 2.3308 -2.0168 1.8512 7 6 2.1204 -2.0541 3.3855 8 6 2.8473 -0.7579 3.8312 9 6 2.5527 0.2192 2.6735 10 1 1.7068 0.8571 2.9300 11 6 3.7677 1.0664 2.3961 12 8 4.5863 0.7016 1.5857 13 8 3.9405 2.2262 3.0493 14 6 5.1335 2.9905 2.7311 15 6 5.1568 4.2712 3.5677 16 6 3.9262 5.1204 3.3789 17 1 3.1967 5.1979 4.1716 18 6 3.7316 5.7984 2.1942 19 7 4.6000 5.6731 1.2146 20 14 2.2383 6.9008 1.9834 21 1 1.1146 6.1099 1.4206 22 1 1.8417 7.4546 3.3029 23 1 2.5716 8.0143 1.0592 24 6 5.5371 4.0467 5.0434 25 8 6.8912 4.2932 4.6143 26 6 6.4771 5.0579 3.4643 27 1 -0.3633 0.7051 0.7478 28 1 -0.3634 0.2950 -0.9843 29 1 -0.3633 -1.0000 0.2368 30 1 1.5543 -2.5927 1.3477 31 1 3.3173 -2.4025 1.5940 32 1 1.0603 -2.0132 3.6355 33 1 2.5896 -2.9354 3.8228 34 1 3.9193 -0.9304 3.9269 35 1 2.4308 -0.3844 4.7666 36 1 5.1278 3.2487 1.6721 37 1 6.0177 2.3938 2.9548 38 1 5.3777 5.1042 1.3257 39 1 5.1440 4.8051 5.7204 40 1 5.3638 3.0291 5.3935 41 1 7.0493 4.8422 2.5620 42 1 6.3711 6.1250 3.6592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650485885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:46 Heat of formation + Delta-G solvation = -153.258574 kcal Electronic energy + Delta-G solvation = -28653.403842 eV Core-core repulsion = 24534.933901 eV Total energy + Delta-G solvation = -4118.469940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.28149 -39.45718 -38.01397 -37.07268 -35.89068 -35.55884 -33.22908 -31.24530 -30.22785 -29.62104 -29.23732 -25.77395 -25.39824 -24.06552 -23.33836 -21.80446 -20.75143 -18.94053 -18.69029 -17.79114 -17.67885 -17.25068 -16.33905 -16.06427 -15.84547 -15.46528 -15.15099 -14.78742 -14.66166 -14.24198 -14.07196 -13.71366 -13.66798 -13.37266 -13.27674 -12.99200 -12.72020 -12.64890 -12.03066 -11.96388 -11.79560 -11.72069 -11.66481 -11.55022 -11.49362 -11.19766 -11.07168 -11.02953 -10.80699 -10.47457 -10.12113 -10.06410 -9.87087 -9.48643 -9.16252 -8.81554 -8.43588 -8.32714 -6.37677 -4.14114 0.10818 2.41905 2.75197 3.23436 3.42685 3.45957 3.60922 3.88609 3.91398 4.23124 4.37719 4.49542 4.59589 4.67327 4.74438 4.81023 5.01092 5.11846 5.20042 5.28110 5.32767 5.43963 5.51206 5.59402 5.62786 5.73640 5.82148 5.91686 5.96000 6.10865 6.14089 6.22537 6.35315 6.44901 6.55075 6.92708 7.07605 7.16455 7.30841 8.01655 8.33976 8.40940 8.77047 9.56314 10.97297 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.004820 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.767368 B = 5807.253524 C = 6990.014548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.614 3.386 3 O -0.924 6.924 4 O -0.949 6.949 5 N -0.995 5.995 6 C 0.121 3.879 7 C -0.128 4.128 8 C -0.114 4.114 9 C 0.163 3.837 10 H 0.111 0.889 11 C 0.446 3.554 12 O -0.507 6.507 13 O -0.327 6.327 14 C 0.098 3.902 15 C 0.000 4.000 16 C -0.585 4.585 17 H 0.058 0.942 18 C 0.026 3.974 19 N -0.903 5.903 20 Si 1.070 2.930 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.284 1.284 24 C 0.045 3.955 25 O -0.407 6.407 26 C 0.051 3.949 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.269 0.731 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -15.336 4.158 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.707 3.293 3 O -0.915 6.915 4 O -0.939 6.939 5 N -0.833 5.833 6 C -0.004 4.004 7 C -0.167 4.167 8 C -0.153 4.153 9 C 0.055 3.945 10 H 0.129 0.871 11 C 0.286 3.714 12 O -0.395 6.395 13 O -0.241 6.241 14 C 0.024 3.976 15 C -0.001 4.001 16 C -0.623 4.623 17 H 0.077 0.923 18 C -0.180 4.180 19 N -0.538 5.538 20 Si 0.898 3.102 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.209 1.209 24 C -0.031 4.031 25 O -0.326 6.326 26 C -0.026 4.026 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.115 -14.151 2.168 17.529 hybrid contribution 0.052 -1.045 1.006 1.451 sum -10.063 -15.197 3.173 18.501 Atomic orbital electron populations 1.30607 1.28808 1.11319 1.11667 1.05020 0.77533 0.74492 0.72239 1.93749 1.76770 1.36504 1.84446 1.93596 1.77365 1.62295 1.60651 1.58659 1.83039 1.14149 1.27459 1.22044 1.02531 0.80209 0.95644 1.22822 1.01428 0.97883 0.94569 1.22588 1.02492 0.93833 0.96407 1.20788 0.94991 0.92316 0.86403 0.87137 1.23686 0.87562 0.81165 0.79010 1.90611 1.44481 1.71767 1.32660 1.86445 1.45861 1.30714 1.61047 1.23032 0.82028 0.91073 1.01472 1.21126 0.96599 0.91462 0.90932 1.21682 1.06615 1.30239 1.03776 0.92347 1.25809 1.02351 0.97869 0.91941 1.70826 1.12209 1.37655 1.33100 0.83524 0.74933 0.76155 0.75540 1.21366 1.21378 1.20947 1.23926 0.81455 0.99622 0.98143 1.89455 1.26756 1.71962 1.44459 1.24069 0.94622 0.96289 0.87639 0.85042 0.85302 0.85595 0.90372 0.90582 0.90066 0.89379 0.89898 0.88446 0.90667 0.93665 0.91860 0.90774 0.91285 0.91160 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.69 10.99 101.05 1.11 -4.57 16 2 S 2.61 37.56 6.15 -107.50 -0.66 36.90 16 3 O -0.92 -18.79 15.84 -62.24 -0.99 -19.78 16 4 O -0.95 -15.89 17.69 -57.54 -1.02 -16.91 16 5 N -1.00 -12.76 2.99 -105.63 -0.32 -13.08 16 6 C 0.12 1.11 6.96 -2.53 -0.02 1.10 16 7 C -0.13 -0.86 7.08 -24.58 -0.17 -1.03 16 8 C -0.11 -1.11 6.47 -24.90 -0.16 -1.27 16 9 C 0.16 2.27 3.51 -68.10 -0.24 2.03 16 10 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.45 9.05 5.60 36.01 0.20 9.25 16 12 O -0.51 -11.81 15.83 -22.57 -0.36 -12.16 16 13 O -0.33 -7.43 9.90 -39.25 -0.39 -7.82 16 14 C 0.10 2.42 4.54 37.15 0.17 2.59 16 15 C 0.00 -0.01 0.48 -154.58 -0.07 -0.09 16 16 C -0.59 -15.70 8.05 -34.44 -0.28 -15.98 16 17 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 18 C 0.03 0.72 5.33 -17.82 -0.09 0.62 16 19 N -0.90 -26.72 13.22 55.43 0.73 -25.99 16 20 Si 1.07 24.90 29.90 -169.99 -5.08 19.81 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.05 0.98 8.35 37.61 0.31 1.29 16 25 O -0.41 -9.37 12.37 -35.23 -0.44 -9.80 16 26 C 0.05 1.21 6.97 37.61 0.26 1.47 16 27 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 2.09 6.53 -51.93 -0.34 1.75 16 37 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.27 7.88 4.59 -40.82 -0.19 7.69 16 39 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 40 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 41 H 0.07 1.64 7.61 -51.93 -0.39 1.25 16 42 H 0.08 1.94 8.09 -51.93 -0.42 1.52 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -38.54 359.60 -8.10 -46.64 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.02 Total: 1.36 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 1.02 Total: -4.60 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.42 Total: -39.07 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -3.19 Total: -66.47 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.81 kcal Atomic # 16 Polarization: 37.56 SS G_CDS: -0.66 Total: 36.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.54 -8.10 -46.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.621 kcal (2) G-P(sol) polarization free energy of solvation -38.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds