Wall clock time and date at job start Tue Mar 31 2020 17:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 110.54426 * 2 1 4 4 O 1.42105 * 110.53904 * 223.25397 * 2 1 3 5 5 N 1.65593 * 104.45167 * 111.62860 * 2 1 3 6 6 C 1.47429 * 125.65108 * 84.51125 * 5 2 1 7 7 C 1.54910 * 104.83097 * 204.09193 * 6 5 2 8 8 C 1.55152 * 101.58240 * 322.99040 * 7 6 5 9 9 C 1.47023 * 125.64638 * 264.46669 * 5 2 1 10 10 H 1.09003 * 109.88245 * 59.40977 * 9 5 2 11 11 C 1.50703 * 109.88408 * 298.39328 * 9 5 2 12 12 O 1.20820 * 120.00058 * 333.07822 * 11 9 5 13 13 O 1.34227 * 119.99624 * 153.07875 * 11 9 5 14 14 C 1.45206 * 116.99721 * 180.02562 * 13 11 9 15 15 C 1.52992 * 109.47076 * 179.97438 * 14 13 11 16 16 C 1.50699 * 113.00238 * 303.34277 * 15 14 13 17 17 H 1.08008 * 120.00241 * 108.70926 * 16 15 14 18 18 C 1.37884 * 120.00219 * 288.71741 * 16 15 14 19 19 N 1.31512 * 119.99679 * 1.97862 * 18 16 15 20 20 Si 1.86800 * 119.99979 * 182.25353 * 18 16 15 21 21 H 1.48499 * 109.47105 * 269.72368 * 20 18 16 22 22 H 1.48496 * 109.47246 * 29.72180 * 20 18 16 23 23 H 1.48495 * 109.47095 * 149.72275 * 20 18 16 24 24 C 1.54032 * 113.92948 * 75.27829 * 15 14 13 25 25 O 1.44172 * 85.51859 * 91.65942 * 24 15 14 26 26 C 1.44179 * 93.34134 * 24.19715 * 25 24 15 27 27 H 1.09008 * 109.46687 * 313.31478 * 1 2 3 28 28 H 1.08997 * 109.47518 * 73.31441 * 1 2 3 29 29 H 1.08995 * 109.46841 * 193.32023 * 1 2 3 30 30 H 1.08998 * 110.36393 * 322.92865 * 6 5 2 31 31 H 1.09001 * 110.36799 * 85.25147 * 6 5 2 32 32 H 1.08998 * 111.00113 * 81.06573 * 7 6 5 33 33 H 1.09004 * 111.00137 * 204.91060 * 7 6 5 34 34 H 1.09000 * 110.71849 * 277.13348 * 8 7 6 35 35 H 1.08998 * 110.71823 * 153.86869 * 8 7 6 36 36 H 1.09003 * 109.46808 * 59.99704 * 14 13 11 37 37 H 1.08993 * 109.47162 * 300.00151 * 14 13 11 38 38 H 0.96997 * 120.00061 * 359.96345 * 19 18 16 39 39 H 1.08999 * 113.86547 * 205.80615 * 24 15 14 40 40 H 1.08998 * 113.86387 * 337.51248 * 24 15 14 41 41 H 1.09001 * 113.86376 * 221.66268 * 26 25 24 42 42 H 1.08991 * 113.86743 * 89.95368 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2273 -0.5910 1.4906 6 6 2.3308 -2.0168 1.8512 7 6 2.1204 -2.0541 3.3855 8 6 2.8473 -0.7579 3.8312 9 6 2.5527 0.2192 2.6735 10 1 1.7068 0.8571 2.9300 11 6 3.7677 1.0664 2.3961 12 8 4.5863 0.7016 1.5857 13 8 3.9405 2.2262 3.0493 14 6 5.1335 2.9905 2.7311 15 6 5.1568 4.2712 3.5677 16 6 3.9262 5.1204 3.3789 17 1 3.1967 5.1979 4.1716 18 6 3.7316 5.7984 2.1942 19 7 4.6000 5.6731 1.2146 20 14 2.2383 6.9008 1.9834 21 1 1.1146 6.1099 1.4206 22 1 1.8417 7.4546 3.3029 23 1 2.5716 8.0143 1.0592 24 6 5.5371 4.0467 5.0434 25 8 6.8912 4.2932 4.6143 26 6 6.4771 5.0579 3.4643 27 1 -0.3633 0.7051 0.7478 28 1 -0.3634 0.2950 -0.9843 29 1 -0.3633 -1.0000 0.2368 30 1 1.5543 -2.5927 1.3477 31 1 3.3173 -2.4025 1.5940 32 1 1.0603 -2.0132 3.6355 33 1 2.5896 -2.9354 3.8228 34 1 3.9193 -0.9304 3.9269 35 1 2.4308 -0.3844 4.7666 36 1 5.1278 3.2487 1.6721 37 1 6.0177 2.3938 2.9548 38 1 5.3777 5.1042 1.3257 39 1 5.1440 4.8051 5.7204 40 1 5.3638 3.0291 5.3935 41 1 7.0493 4.8422 2.5620 42 1 6.3711 6.1250 3.6592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650485885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:43 Heat of formation + Delta-G solvation = -183.725490 kcal Electronic energy + Delta-G solvation = -28654.724986 eV Core-core repulsion = 24534.933901 eV Total energy + Delta-G solvation = -4119.791085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.89906 -41.17302 -39.16276 -38.31786 -37.32372 -37.10346 -35.28041 -32.06391 -31.71763 -30.71531 -30.35537 -27.65281 -27.23967 -26.02626 -24.53016 -22.59014 -22.02267 -20.83365 -19.97543 -19.25573 -19.08865 -18.83664 -17.70238 -17.47284 -17.09928 -17.07555 -16.68341 -16.49911 -16.17431 -15.87366 -15.55089 -15.08062 -14.59736 -14.43395 -14.32374 -14.09856 -13.96427 -13.76633 -13.68069 -13.42673 -13.29774 -13.22463 -13.04213 -12.81825 -12.75582 -12.69073 -12.36956 -12.12861 -12.05346 -11.91562 -11.84207 -11.76407 -11.48868 -11.36213 -10.71063 -10.53318 -10.35035 -10.18019 -8.56192 -6.32982 -0.90326 1.12762 1.43921 1.54335 1.63242 1.75099 1.79273 2.59018 2.86916 2.89837 2.92981 3.18940 3.40400 3.45990 3.69876 3.90841 3.95966 3.98870 4.01291 4.10679 4.19270 4.23554 4.41797 4.46060 4.50036 4.50767 4.56177 4.66048 4.80672 4.83897 4.88526 5.01196 5.04161 5.09633 5.24604 5.25740 5.28849 5.36760 5.57360 5.96262 6.17494 6.57199 6.74327 7.45974 8.79646 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.004820 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.767368 B = 5807.253524 C = 6990.014548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.593 3.407 3 O -1.004 7.004 4 O -0.992 6.992 5 N -0.998 5.998 6 C 0.105 3.895 7 C -0.108 4.108 8 C -0.113 4.113 9 C 0.164 3.836 10 H 0.136 0.864 11 C 0.433 3.567 12 O -0.550 6.550 13 O -0.335 6.335 14 C 0.110 3.890 15 C -0.019 4.019 16 C -0.584 4.584 17 H 0.063 0.937 18 C -0.025 4.025 19 N -0.936 5.936 20 Si 1.110 2.890 21 H -0.281 1.281 22 H -0.258 1.258 23 H -0.288 1.288 24 C 0.058 3.942 25 O -0.410 6.410 26 C 0.056 3.944 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.169 0.831 30 H 0.114 0.886 31 H 0.050 0.950 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.030 0.970 37 H 0.045 0.955 38 H 0.258 0.742 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -16.966 6.601 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.693 3.307 3 O -0.994 6.994 4 O -0.982 6.982 5 N -0.836 5.836 6 C -0.018 4.018 7 C -0.146 4.146 8 C -0.152 4.152 9 C 0.055 3.945 10 H 0.154 0.846 11 C 0.276 3.724 12 O -0.440 6.440 13 O -0.249 6.249 14 C 0.036 3.964 15 C -0.020 4.020 16 C -0.621 4.621 17 H 0.081 0.919 18 C -0.224 4.224 19 N -0.574 5.574 20 Si 0.932 3.068 21 H -0.208 1.208 22 H -0.182 1.182 23 H -0.214 1.214 24 C -0.018 4.018 25 O -0.329 6.329 26 C -0.021 4.021 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.187 0.813 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.938 -15.813 4.640 21.583 hybrid contribution 1.220 -0.654 0.220 1.402 sum -12.717 -16.468 4.859 21.366 Atomic orbital electron populations 1.30243 1.19810 1.14831 1.13714 1.05194 0.80812 0.72465 0.72186 1.93661 1.80312 1.39935 1.85521 1.93530 1.80170 1.62366 1.62165 1.58526 1.83218 1.15497 1.26328 1.22406 1.02610 0.78436 0.98365 1.22869 1.03279 0.96704 0.91797 1.22731 1.02126 0.94482 0.95812 1.21242 0.92208 0.92790 0.88219 0.84614 1.25361 0.89071 0.80401 0.77604 1.90580 1.46559 1.72480 1.34392 1.86451 1.44859 1.31933 1.61666 1.22650 0.83238 0.91704 0.98848 1.21293 0.96231 0.91185 0.93273 1.21964 1.07090 1.29624 1.03463 0.91880 1.27148 1.04113 0.99185 0.91962 1.70924 1.13043 1.39000 1.34399 0.83048 0.72220 0.74656 0.76860 1.20763 1.18199 1.21398 1.24014 0.80098 1.01506 0.96217 1.89443 1.27617 1.71815 1.44048 1.23926 0.94331 0.96129 0.87759 0.82958 0.83498 0.81295 0.86835 0.93157 0.86588 0.87217 0.91866 0.85517 0.95142 0.93671 0.93059 0.89182 0.89016 0.91883 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -7.84 10.99 113.37 1.25 -6.60 16 2 S 2.59 74.46 6.15 -56.49 -0.35 74.11 16 3 O -1.00 -43.29 15.84 -123.16 -1.95 -45.24 16 4 O -0.99 -34.31 17.69 -127.65 -2.26 -36.57 16 5 N -1.00 -24.44 2.99 -488.10 -1.46 -25.90 16 6 C 0.11 1.70 6.96 86.85 0.60 2.30 16 7 C -0.11 -0.97 7.08 31.98 0.23 -0.74 16 8 C -0.11 -1.88 6.47 31.78 0.21 -1.67 16 9 C 0.16 4.35 3.51 44.60 0.16 4.51 16 10 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 11 C 0.43 18.27 5.60 71.24 0.40 18.67 16 12 O -0.55 -27.52 15.83 25.64 0.41 -27.11 16 13 O -0.33 -15.70 9.90 -51.39 -0.51 -16.21 16 14 C 0.11 5.73 4.54 71.98 0.33 6.06 16 15 C -0.02 -0.96 0.48 -52.23 -0.03 -0.98 16 16 C -0.58 -31.44 8.05 25.60 0.21 -31.24 16 17 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 18 C -0.03 -1.42 5.33 84.66 0.45 -0.97 16 19 N -0.94 -57.80 13.22 21.45 0.28 -57.52 16 20 Si 1.11 49.95 29.90 68.60 2.05 52.00 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 C 0.06 2.44 8.35 72.27 0.60 3.04 16 25 O -0.41 -18.77 12.37 -148.98 -1.84 -20.62 16 26 C 0.06 2.72 6.97 72.28 0.50 3.22 16 27 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 1.83 6.53 -2.39 -0.02 1.82 16 37 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.26 16.07 4.59 -92.71 -0.43 15.65 16 39 H 0.09 3.52 8.09 -2.39 -0.02 3.50 16 40 H 0.09 3.44 8.10 -2.39 -0.02 3.42 16 41 H 0.06 3.12 7.61 -2.39 -0.02 3.10 16 42 H 0.08 3.84 8.09 -2.39 -0.02 3.82 16 Total: -1.00 -92.65 359.60 0.65 -92.00 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.37 Total: 15.45 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.91 Total: -4.40 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.17 Total: -83.42 kcal Atomic # 8 Polarization: -139.59 SS G_CDS: -6.16 Total: -145.74 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Atomic # 16 Polarization: 74.46 SS G_CDS: -0.35 Total: 74.11 kcal Total: -92.65 0.65 -92.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.725 kcal (2) G-P(sol) polarization free energy of solvation -92.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds