Wall clock time and date at job start Tue Mar 31 2020 17:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 110.54661 * 2 1 4 4 O 1.42101 * 110.53918 * 223.25087 * 2 1 3 5 5 N 1.65596 * 104.45343 * 111.62642 * 2 1 3 6 6 C 1.47428 * 125.64609 * 269.95845 * 5 2 1 7 7 C 1.54916 * 104.83098 * 155.90289 * 6 5 2 8 8 C 1.55405 * 101.66476 * 36.92360 * 7 6 5 9 9 C 1.47020 * 125.65099 * 89.99205 * 5 2 1 10 10 H 1.08997 * 109.88339 * 300.60722 * 9 5 2 11 11 C 1.50705 * 109.87858 * 61.61141 * 9 5 2 12 12 O 1.20824 * 120.00131 * 359.68450 * 11 9 5 13 13 O 1.34226 * 119.99967 * 179.68699 * 11 9 5 14 14 C 1.45199 * 116.99994 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 11 16 16 C 1.50705 * 113.56340 * 51.06586 * 15 14 13 17 17 H 1.07994 * 119.99668 * 249.38866 * 16 15 14 18 18 C 1.37875 * 119.99796 * 69.39617 * 16 15 14 19 19 N 1.31509 * 120.00092 * 5.63383 * 18 16 15 20 20 Si 1.86802 * 119.99738 * 185.63726 * 18 16 15 21 21 H 1.48503 * 109.47169 * 89.99958 * 20 18 16 22 22 H 1.48500 * 109.46978 * 209.99528 * 20 18 16 23 23 H 1.48496 * 109.47257 * 329.99884 * 20 18 16 24 24 C 1.53362 * 114.56869 * 185.34151 * 15 14 13 25 25 O 1.43349 * 88.44722 * 86.60674 * 24 15 14 26 26 C 1.43354 * 88.32099 * 28.15114 * 25 24 15 27 27 H 1.09007 * 109.46760 * 308.37585 * 1 2 3 28 28 H 1.09000 * 109.47088 * 68.36941 * 1 2 3 29 29 H 1.08992 * 109.47102 * 188.37678 * 1 2 3 30 30 H 1.08995 * 110.36774 * 274.73883 * 6 5 2 31 31 H 1.09004 * 110.36686 * 36.95907 * 6 5 2 32 32 H 1.08999 * 111.00358 * 155.07970 * 7 6 5 33 33 H 1.09001 * 111.00254 * 278.93694 * 7 6 5 34 34 H 1.08996 * 110.85459 * 206.29973 * 8 7 6 35 35 H 1.08996 * 110.69631 * 82.95319 * 8 7 6 36 36 H 1.08993 * 109.47504 * 59.99953 * 14 13 11 37 37 H 1.09001 * 109.47202 * 299.99686 * 14 13 11 38 38 H 0.97010 * 119.99892 * 179.97438 * 19 18 16 39 39 H 1.09005 * 113.39392 * 331.71344 * 24 15 14 40 40 H 1.08997 * 113.39332 * 201.50607 * 24 15 14 41 41 H 1.09005 * 113.39103 * 86.74737 * 26 25 24 42 42 H 1.09005 * 113.39281 * 216.90414 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 2.4426 0.2162 2.7054 7 6 2.1851 -0.7597 3.8807 8 6 2.7793 -2.0840 3.3255 9 6 2.4410 -2.0074 1.8218 10 1 1.5347 -2.5770 1.6162 11 6 3.5861 -2.5562 1.0102 12 8 4.1672 -1.8436 0.2264 13 8 3.9605 -3.8367 1.1581 14 6 5.0715 -4.2969 0.3444 15 6 5.3513 -5.7699 0.6493 16 6 4.1261 -6.6442 0.5730 17 1 3.7126 -7.0740 1.4734 18 6 3.5333 -6.8954 -0.6462 19 7 4.0982 -6.4651 -1.7531 20 14 1.9276 -7.8467 -0.7256 21 1 0.7866 -6.8996 -0.6458 22 1 1.8596 -8.5969 -2.0054 23 1 1.8602 -8.7999 0.4111 24 6 6.5881 -6.3428 -0.0535 25 8 7.3820 -5.8684 1.0418 26 6 6.2300 -6.0099 1.8831 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 3.4670 0.5871 2.7378 31 1 1.7377 1.0470 2.7387 32 1 2.7146 -0.4391 4.7779 33 1 1.1177 -0.8641 4.0752 34 1 2.2991 -2.9476 3.7853 35 1 3.8583 -2.1154 3.4770 36 1 5.9579 -3.7046 0.5713 37 1 4.8201 -4.1853 -0.7103 38 1 3.6812 -6.6422 -2.6109 39 1 6.8161 -5.8499 -0.9986 40 1 6.5732 -7.4294 -0.1384 41 1 6.1215 -7.0096 2.3039 42 1 6.1445 -5.2257 2.6354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650485886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:54 Heat of formation + Delta-G solvation = -146.587245 kcal Electronic energy + Delta-G solvation = -28543.137028 eV Core-core repulsion = 24424.956378 eV Total energy + Delta-G solvation = -4118.180650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17758 -39.54671 -37.92731 -37.00702 -35.82267 -35.41239 -32.95846 -31.13496 -30.27682 -29.60147 -29.47387 -25.59379 -25.04621 -24.41502 -23.29674 -21.69765 -20.63971 -18.83421 -18.52602 -17.78777 -17.50587 -16.87555 -16.15706 -15.96719 -15.57924 -15.40985 -15.05007 -14.85110 -14.59547 -14.14130 -14.12154 -13.83367 -13.59526 -13.35329 -13.25374 -12.90830 -12.68316 -12.34070 -11.95009 -11.91423 -11.87227 -11.65701 -11.45012 -11.41074 -11.32417 -11.11611 -11.03281 -10.94146 -10.87673 -10.62539 -10.49866 -9.89066 -9.68029 -9.16254 -8.96964 -8.90482 -8.66988 -8.44782 -6.13096 -4.17156 0.16885 2.50701 2.89461 3.25787 3.33134 3.34432 3.36767 3.91506 4.02628 4.25375 4.35527 4.45463 4.61481 4.74835 4.87098 5.06208 5.12382 5.18170 5.22832 5.26815 5.44782 5.46529 5.59376 5.67172 5.72517 5.84425 5.89997 6.01460 6.10407 6.19378 6.31872 6.38426 6.50999 6.75873 6.87508 7.13050 7.19945 7.34563 7.48191 7.81935 8.17617 8.56764 8.79785 9.47921 10.96319 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.004420 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.060553 B = 6332.877023 C = 7032.135558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.680 4.680 2 S 2.619 3.381 3 O -0.953 6.953 4 O -0.915 6.915 5 N -0.995 5.995 6 C 0.121 3.879 7 C -0.131 4.131 8 C -0.113 4.113 9 C 0.161 3.839 10 H 0.111 0.889 11 C 0.433 3.567 12 O -0.488 6.488 13 O -0.330 6.330 14 C 0.110 3.890 15 C 0.022 3.978 16 C -0.505 4.505 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.059 3.941 25 O -0.404 6.404 26 C 0.031 3.969 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 11.384 10.408 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.829 4.829 2 S 2.711 3.289 3 O -0.944 6.944 4 O -0.905 6.905 5 N -0.833 5.833 6 C -0.004 4.004 7 C -0.170 4.170 8 C -0.152 4.152 9 C 0.053 3.947 10 H 0.129 0.871 11 C 0.272 3.728 12 O -0.375 6.375 13 O -0.245 6.245 14 C 0.036 3.964 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.083 0.917 18 C -0.134 4.134 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.017 4.017 25 O -0.323 6.323 26 C -0.046 4.046 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.132 11.955 9.200 17.137 hybrid contribution -1.677 -0.641 -0.209 1.807 sum -9.809 11.315 8.992 17.467 Atomic orbital electron populations 1.30677 1.29686 1.11481 1.11056 1.04913 0.77115 0.74338 0.72511 1.93584 1.77490 1.37906 1.85379 1.93750 1.75972 1.60611 1.60201 1.58653 1.83911 1.13412 1.27305 1.22027 1.02108 0.93420 0.82858 1.22889 1.01910 0.94547 0.97621 1.22618 1.02976 0.99006 0.90577 1.20778 0.96340 0.81757 0.95820 0.87145 1.23643 0.85193 0.82011 0.81951 1.90667 1.53338 1.59595 1.33915 1.86445 1.50476 1.25805 1.61765 1.22775 0.83880 0.94631 0.95094 1.20406 0.95123 0.91084 0.91214 1.20690 1.10892 1.29270 0.93438 0.91658 1.24962 0.97280 0.95527 0.95600 1.69907 1.38699 1.45825 0.97780 0.86561 0.83996 0.79804 0.77446 1.20607 1.21302 1.19788 1.23619 0.88616 0.98912 0.90583 1.89633 1.32951 1.85876 1.23863 1.23817 0.85120 0.99987 0.95646 0.85721 0.85518 0.85344 0.90853 0.90354 0.89467 0.90226 0.88333 0.89784 0.93928 0.89906 0.92562 0.91014 0.90789 0.91194 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -5.61 10.99 101.05 1.11 -4.50 16 2 S 2.62 35.97 6.03 -107.50 -0.65 35.32 16 3 O -0.95 -15.27 17.60 -57.54 -1.01 -16.28 16 4 O -0.92 -17.65 14.57 -66.97 -0.98 -18.63 16 5 N -1.00 -12.46 3.06 -105.63 -0.32 -12.78 16 6 C 0.12 1.12 6.89 -2.52 -0.02 1.10 16 7 C -0.13 -0.91 7.09 -24.44 -0.17 -1.09 16 8 C -0.11 -1.13 6.46 -24.76 -0.16 -1.29 16 9 C 0.16 2.21 3.56 -68.10 -0.24 1.97 16 10 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.43 8.64 6.58 36.01 0.24 8.88 16 12 O -0.49 -11.36 13.43 -26.60 -0.36 -11.71 16 13 O -0.33 -7.28 9.75 -39.25 -0.38 -7.66 16 14 C 0.11 2.67 4.83 37.16 0.18 2.85 16 15 C 0.02 0.54 0.76 -155.28 -0.12 0.42 16 16 C -0.51 -12.96 8.01 -34.44 -0.28 -13.23 16 17 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 18 C 0.07 1.83 5.36 -17.82 -0.10 1.73 16 19 N -0.89 -24.39 12.09 55.43 0.67 -23.72 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.06 1.41 7.20 24.60 0.18 1.59 16 25 O -0.40 -9.32 12.57 -35.23 -0.44 -9.76 16 26 C 0.03 0.67 7.89 24.60 0.19 0.86 16 27 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 36 H 0.04 1.01 7.96 -51.93 -0.41 0.60 16 37 H 0.08 2.27 7.58 -51.93 -0.39 1.88 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 39 H 0.07 1.75 8.13 -51.93 -0.42 1.33 16 40 H 0.07 1.75 8.10 -51.93 -0.42 1.33 16 41 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 42 H 0.06 1.22 8.13 -51.93 -0.42 0.79 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -36.00 360.84 -8.49 -44.49 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.25 Total: 0.63 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 0.82 Total: -0.71 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.35 Total: -36.50 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -3.17 Total: -64.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 35.97 SS G_CDS: -0.65 Total: 35.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.00 -8.49 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.102 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds