Wall clock time and date at job start Tue Mar 31 2020 17:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 110.54661 * 2 1 4 4 O 1.42101 * 110.53918 * 223.25087 * 2 1 3 5 5 N 1.65596 * 104.45343 * 111.62642 * 2 1 3 6 6 C 1.47428 * 125.64609 * 269.95845 * 5 2 1 7 7 C 1.54916 * 104.83098 * 155.90289 * 6 5 2 8 8 C 1.55405 * 101.66476 * 36.92360 * 7 6 5 9 9 C 1.47020 * 125.65099 * 89.99205 * 5 2 1 10 10 H 1.08997 * 109.88339 * 300.60722 * 9 5 2 11 11 C 1.50705 * 109.87858 * 61.61141 * 9 5 2 12 12 O 1.20824 * 120.00131 * 359.68450 * 11 9 5 13 13 O 1.34226 * 119.99967 * 179.68699 * 11 9 5 14 14 C 1.45199 * 116.99994 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 11 16 16 C 1.50705 * 113.56340 * 51.06586 * 15 14 13 17 17 H 1.07994 * 119.99668 * 249.38866 * 16 15 14 18 18 C 1.37875 * 119.99796 * 69.39617 * 16 15 14 19 19 N 1.31509 * 120.00092 * 5.63383 * 18 16 15 20 20 Si 1.86802 * 119.99738 * 185.63726 * 18 16 15 21 21 H 1.48503 * 109.47169 * 89.99958 * 20 18 16 22 22 H 1.48500 * 109.46978 * 209.99528 * 20 18 16 23 23 H 1.48496 * 109.47257 * 329.99884 * 20 18 16 24 24 C 1.53362 * 114.56869 * 185.34151 * 15 14 13 25 25 O 1.43349 * 88.44722 * 86.60674 * 24 15 14 26 26 C 1.43354 * 88.32099 * 28.15114 * 25 24 15 27 27 H 1.09007 * 109.46760 * 308.37585 * 1 2 3 28 28 H 1.09000 * 109.47088 * 68.36941 * 1 2 3 29 29 H 1.08992 * 109.47102 * 188.37678 * 1 2 3 30 30 H 1.08995 * 110.36774 * 274.73883 * 6 5 2 31 31 H 1.09004 * 110.36686 * 36.95907 * 6 5 2 32 32 H 1.08999 * 111.00358 * 155.07970 * 7 6 5 33 33 H 1.09001 * 111.00254 * 278.93694 * 7 6 5 34 34 H 1.08996 * 110.85459 * 206.29973 * 8 7 6 35 35 H 1.08996 * 110.69631 * 82.95319 * 8 7 6 36 36 H 1.08993 * 109.47504 * 59.99953 * 14 13 11 37 37 H 1.09001 * 109.47202 * 299.99686 * 14 13 11 38 38 H 0.97010 * 119.99892 * 179.97438 * 19 18 16 39 39 H 1.09005 * 113.39392 * 331.71344 * 24 15 14 40 40 H 1.08997 * 113.39332 * 201.50607 * 24 15 14 41 41 H 1.09005 * 113.39103 * 86.74737 * 26 25 24 42 42 H 1.09005 * 113.39281 * 216.90414 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 2.4426 0.2162 2.7054 7 6 2.1851 -0.7597 3.8807 8 6 2.7793 -2.0840 3.3255 9 6 2.4410 -2.0074 1.8218 10 1 1.5347 -2.5770 1.6162 11 6 3.5861 -2.5562 1.0102 12 8 4.1672 -1.8436 0.2264 13 8 3.9605 -3.8367 1.1581 14 6 5.0715 -4.2969 0.3444 15 6 5.3513 -5.7699 0.6493 16 6 4.1261 -6.6442 0.5730 17 1 3.7126 -7.0740 1.4734 18 6 3.5333 -6.8954 -0.6462 19 7 4.0982 -6.4651 -1.7531 20 14 1.9276 -7.8467 -0.7256 21 1 0.7866 -6.8996 -0.6458 22 1 1.8596 -8.5969 -2.0054 23 1 1.8602 -8.7999 0.4111 24 6 6.5881 -6.3428 -0.0535 25 8 7.3820 -5.8684 1.0418 26 6 6.2300 -6.0099 1.8831 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 3.4670 0.5871 2.7378 31 1 1.7377 1.0470 2.7387 32 1 2.7146 -0.4391 4.7779 33 1 1.1177 -0.8641 4.0752 34 1 2.2991 -2.9476 3.7853 35 1 3.8583 -2.1154 3.4770 36 1 5.9579 -3.7046 0.5713 37 1 4.8201 -4.1853 -0.7103 38 1 3.6812 -6.6422 -2.6109 39 1 6.8161 -5.8499 -0.9986 40 1 6.5732 -7.4294 -0.1384 41 1 6.1215 -7.0096 2.3039 42 1 6.1445 -5.2257 2.6354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650485886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:52 Heat of formation + Delta-G solvation = -174.062392 kcal Electronic energy + Delta-G solvation = -28544.328440 eV Core-core repulsion = 24424.956378 eV Total energy + Delta-G solvation = -4119.372062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.82065 -41.19799 -39.05282 -38.20025 -37.19084 -36.93118 -34.93111 -32.06719 -31.82623 -30.72811 -30.32854 -27.42571 -26.88713 -26.32115 -24.43879 -22.45370 -21.93119 -20.59721 -19.82360 -18.93458 -18.88388 -18.60126 -17.47871 -17.31336 -17.05780 -16.98925 -16.63554 -16.44959 -16.00553 -15.86898 -15.65621 -14.96526 -14.43588 -14.28190 -14.11765 -14.06199 -13.94277 -13.79840 -13.56365 -13.20150 -13.15153 -13.08203 -12.89378 -12.76769 -12.71712 -12.62857 -12.50137 -12.29981 -12.06350 -11.98018 -11.73185 -11.54042 -11.27900 -10.90041 -10.82909 -10.58293 -10.43731 -10.12632 -8.13165 -6.23156 -0.80657 1.35470 1.46276 1.47256 1.49497 1.57427 1.90483 2.45774 2.95431 3.09505 3.17720 3.31675 3.44053 3.60373 3.80273 3.99140 4.02131 4.07514 4.15016 4.22316 4.28330 4.40731 4.58388 4.59766 4.60892 4.67558 4.80259 4.84085 4.90549 4.93553 4.96947 5.07293 5.18420 5.24080 5.32843 5.38258 5.41903 5.42246 5.75559 5.78568 6.20912 6.78037 6.92904 7.45061 8.95473 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.004420 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.060553 B = 6332.877023 C = 7032.135558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.603 3.397 3 O -0.992 6.992 4 O -0.989 6.989 5 N -0.998 5.998 6 C 0.107 3.893 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.163 3.837 10 H 0.138 0.862 11 C 0.419 3.581 12 O -0.530 6.530 13 O -0.334 6.334 14 C 0.123 3.877 15 C 0.006 3.994 16 C -0.507 4.507 17 H 0.073 0.927 18 C 0.020 3.980 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.257 1.257 24 C 0.064 3.936 25 O -0.410 6.410 26 C 0.042 3.958 27 H 0.163 0.837 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.260 0.740 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 11.441 13.560 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.702 3.298 3 O -0.983 6.983 4 O -0.980 6.980 5 N -0.835 5.835 6 C -0.017 4.017 7 C -0.149 4.149 8 C -0.151 4.151 9 C 0.055 3.945 10 H 0.155 0.845 11 C 0.261 3.739 12 O -0.420 6.420 13 O -0.249 6.249 14 C 0.049 3.951 15 C 0.006 3.994 16 C -0.545 4.545 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.557 5.557 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.181 1.181 24 C -0.013 4.013 25 O -0.329 6.329 26 C -0.034 4.034 27 H 0.181 0.819 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.486 12.026 12.391 20.738 hybrid contribution -0.643 -0.559 -1.190 1.463 sum -12.129 11.467 11.201 20.101 Atomic orbital electron populations 1.30322 1.21496 1.13945 1.13762 1.04935 0.80024 0.72711 0.72083 1.93523 1.80050 1.38958 1.85762 1.93672 1.79378 1.62114 1.62798 1.58535 1.84207 1.13203 1.27597 1.22361 1.01982 0.94774 0.82590 1.22913 1.03907 0.91261 0.96841 1.22732 1.02485 1.01997 0.87914 1.21160 0.94155 0.82335 0.96883 0.84468 1.25257 0.86124 0.80757 0.81783 1.90650 1.55149 1.60224 1.35927 1.86453 1.49692 1.27548 1.61172 1.22362 0.84511 0.95167 0.93094 1.20508 0.95185 0.90545 0.93185 1.20956 1.11131 1.28857 0.93560 0.90885 1.25737 1.00304 0.96605 0.95324 1.70061 1.40116 1.47377 0.98133 0.85607 0.80130 0.78722 0.77567 1.20266 1.21804 1.18083 1.23497 0.88937 0.98664 0.90199 1.89622 1.33468 1.85942 1.23912 1.23854 0.83030 1.01688 0.94820 0.81858 0.83760 0.83387 0.93062 0.87238 0.87390 0.87021 0.86002 0.91596 0.94579 0.94255 0.93065 0.92776 0.90708 0.89379 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.90 10.99 113.37 1.25 -6.65 16 2 S 2.60 71.08 6.03 -56.49 -0.34 70.74 16 3 O -0.99 -32.47 17.60 -127.65 -2.25 -34.72 16 4 O -0.99 -40.41 14.57 -118.63 -1.73 -42.14 16 5 N -1.00 -23.75 3.06 -488.11 -1.49 -25.24 16 6 C 0.11 1.73 6.89 86.86 0.60 2.33 16 7 C -0.11 -1.07 7.09 32.08 0.23 -0.84 16 8 C -0.11 -1.96 6.46 31.87 0.21 -1.75 16 9 C 0.16 4.26 3.56 44.60 0.16 4.42 16 10 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 11 C 0.42 17.31 6.58 71.24 0.47 17.78 16 12 O -0.53 -26.43 13.43 29.48 0.40 -26.03 16 13 O -0.33 -15.11 9.75 -51.38 -0.50 -15.61 16 14 C 0.12 6.29 4.83 71.98 0.35 6.63 16 15 C 0.01 0.32 0.76 -52.68 -0.04 0.28 16 16 C -0.51 -25.93 8.01 25.60 0.21 -25.72 16 17 H 0.07 3.55 7.82 -2.91 -0.02 3.53 16 18 C 0.02 1.06 5.36 84.66 0.45 1.51 16 19 N -0.92 -52.36 12.09 21.45 0.26 -52.10 16 20 Si 0.95 41.54 29.54 68.60 2.03 43.56 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 C 0.06 3.13 7.20 63.84 0.46 3.59 16 25 O -0.41 -18.98 12.57 -148.98 -1.87 -20.85 16 26 C 0.04 1.78 7.89 63.84 0.50 2.28 16 27 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 36 H 0.04 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.04 2.32 7.58 -2.39 -0.02 2.30 16 38 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 39 H 0.05 2.79 8.13 -2.38 -0.02 2.78 16 40 H 0.07 3.61 8.10 -2.39 -0.02 3.59 16 41 H 0.09 3.38 8.10 -2.38 -0.02 3.36 16 42 H 0.08 3.11 8.13 -2.38 -0.02 3.09 16 Total: -1.00 -85.12 360.84 0.35 -84.77 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.02 Total: 13.77 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.84 Total: 3.85 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.23 Total: -77.34 kcal Atomic # 8 Polarization: -133.39 SS G_CDS: -5.95 Total: -139.35 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 71.08 SS G_CDS: -0.34 Total: 70.74 kcal Total: -85.12 0.35 -84.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.295 kcal (2) G-P(sol) polarization free energy of solvation -85.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds