Wall clock time and date at job start Tue Mar 31 2020 17:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37652 * 125.68255 * 2 1 4 4 C 1.46680 * 126.23111 * 0.02881 * 3 2 1 5 5 O 1.21696 * 119.99823 * 350.23981 * 4 3 2 6 6 N 1.34777 * 119.99914 * 170.23906 * 4 3 2 7 7 C 1.46495 * 119.99750 * 180.54807 * 6 4 3 8 8 C 1.50698 * 109.47164 * 90.00150 * 7 6 4 9 9 H 1.08005 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00230 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99979 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99724 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47260 * 89.99570 * 12 10 8 14 14 H 1.48498 * 109.47073 * 209.99568 * 12 10 8 15 15 H 1.48498 * 109.47311 * 329.99899 * 12 10 8 16 16 C 1.46494 * 119.99795 * 0.54536 * 6 4 3 17 17 C 1.50707 * 109.47257 * 82.07302 * 16 6 4 18 18 C 1.34509 * 125.78830 * 97.35197 * 17 16 6 19 19 C 1.41386 * 106.83908 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84164 * 0.02562 * 19 18 17 21 21 O 1.34297 * 125.78826 * 277.05548 * 17 16 6 22 22 C 1.37869 * 107.53362 * 179.97438 * 3 2 1 23 23 C 1.39839 * 107.08759 * 0.02562 * 22 3 2 24 24 C 1.35448 * 107.86263 * 359.97438 * 23 22 3 25 25 N 1.48027 * 125.56561 * 180.02562 * 24 23 22 26 26 O 1.21800 * 119.99460 * 359.97438 * 25 24 23 27 27 O 1.21798 * 120.00643 * 179.97438 * 25 24 23 28 28 H 1.09000 * 109.46707 * 265.13200 * 1 2 3 29 29 H 1.09001 * 109.46569 * 25.12504 * 1 2 3 30 30 H 1.08995 * 109.47282 * 145.12730 * 1 2 3 31 31 H 1.09002 * 109.47038 * 209.99459 * 7 6 4 32 32 H 1.08994 * 109.47315 * 330.00112 * 7 6 4 33 33 H 0.97004 * 119.99565 * 180.02562 * 11 10 8 34 34 H 1.09006 * 109.47362 * 202.07002 * 16 6 4 35 35 H 1.09001 * 109.47663 * 322.07481 * 16 6 4 36 36 H 1.08000 * 126.58449 * 0.04779 * 18 17 16 37 37 H 1.08002 * 126.57405 * 179.97438 * 19 18 17 38 38 H 1.08000 * 125.78788 * 180.02562 * 20 19 18 39 39 H 1.08003 * 126.45416 * 180.26683 * 22 3 2 40 40 H 1.07993 * 126.06483 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8126 2.5124 0.0006 5 8 0.6362 2.7684 -0.1775 6 7 2.6969 3.5100 0.1984 7 6 2.2402 4.9019 0.2110 8 6 1.8652 5.2949 1.6167 9 1 1.9575 4.5792 2.4203 10 6 1.4044 6.5681 1.8769 11 7 1.0767 6.9108 3.1036 12 14 1.2441 7.8056 0.4869 13 1 -0.1114 7.7052 -0.1115 14 1 1.4501 9.1767 1.0187 15 1 2.2660 7.5187 -0.5516 16 6 4.1148 3.2025 0.4009 17 6 4.7785 2.9892 -0.9353 18 6 5.4825 3.9086 -1.6195 19 6 5.9204 3.2859 -2.8109 20 6 5.4571 2.0233 -2.7837 21 8 4.7718 1.8473 -1.6421 22 6 3.5780 0.6886 0.0006 23 6 3.5521 -0.7095 0.0003 24 6 2.2555 -1.1010 0.0002 25 7 1.7793 -2.5026 0.0005 26 8 2.5822 -3.4185 0.0004 27 8 0.5847 -2.7401 0.0008 28 1 -0.3633 -0.0872 1.0240 29 1 -0.3632 0.9305 -0.4364 30 1 -0.3633 -0.8431 -0.5875 31 1 3.0404 5.5501 -0.1462 32 1 1.3714 5.0051 -0.4391 33 1 0.7521 7.8065 3.2865 34 1 4.5966 4.0327 0.9174 35 1 4.2083 2.2976 1.0015 36 1 5.6766 4.9270 -1.3168 37 1 6.5124 3.7376 -3.5932 38 1 5.6147 1.2761 -3.5474 39 1 4.4584 1.3142 0.0048 40 1 4.4132 -1.3613 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343875813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:10 Heat of formation + Delta-G solvation = 84.538741 kcal Electronic energy + Delta-G solvation = -29301.332065 eV Core-core repulsion = 25090.022590 eV Total energy + Delta-G solvation = -4211.309475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.92244 -42.49012 -41.37932 -39.00957 -36.75656 -35.97857 -33.50817 -33.02451 -32.70126 -31.15822 -30.44168 -28.41434 -27.03709 -26.20142 -25.81349 -23.15094 -22.40704 -21.36233 -21.10624 -20.69311 -19.45726 -18.72080 -18.56904 -17.84467 -17.53464 -17.12162 -16.75958 -16.03303 -15.91942 -15.67696 -14.97296 -14.65443 -14.35998 -14.11428 -13.82990 -13.70100 -13.21968 -12.99854 -12.73806 -12.67467 -12.55836 -12.46299 -12.32139 -11.89343 -11.68072 -11.47144 -11.31303 -11.27387 -10.99055 -10.70933 -10.37487 -9.92932 -9.80308 -9.61184 -9.26726 -8.95757 -8.75532 -8.58455 -8.20681 -6.24814 -4.26423 -0.05723 0.91888 1.38638 1.63161 2.21325 2.33274 2.59763 2.87451 3.17370 3.23145 3.25943 3.40253 3.54312 4.24575 4.37907 4.49022 4.61927 4.65888 4.93037 5.00140 5.06837 5.09409 5.14477 5.24073 5.38417 5.52504 5.59914 5.64834 5.76685 5.84750 5.92697 6.03136 6.08538 6.33289 6.40378 6.47458 6.57761 6.66852 6.86873 7.10416 7.37632 7.55048 7.69067 8.21504 8.41206 8.77067 9.33189 10.87873 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.004473 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.679376 B = 6258.449695 C = 8041.475392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.381 5.381 3 C 0.047 3.953 4 C 0.579 3.421 5 O -0.525 6.525 6 N -0.564 5.564 7 C 0.218 3.782 8 C -0.538 4.538 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.265 1.265 16 C 0.167 3.833 17 C -0.047 4.047 18 C -0.182 4.182 19 C -0.216 4.216 20 C -0.047 4.047 21 O -0.161 6.161 22 C -0.163 4.163 23 C -0.092 4.092 24 C 0.054 3.946 25 N 0.064 4.936 26 O -0.146 6.146 27 O -0.179 6.179 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.197 0.803 39 H 0.197 0.803 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 -11.317 -9.472 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.057 5.057 3 C -0.074 4.074 4 C 0.365 3.635 5 O -0.403 6.403 6 N -0.293 5.293 7 C 0.099 3.901 8 C -0.577 4.577 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.700 3.300 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.043 3.957 17 C -0.098 4.098 18 C -0.202 4.202 19 C -0.235 4.235 20 C -0.115 4.115 21 O -0.057 6.057 22 C -0.187 4.187 23 C -0.121 4.121 24 C -0.143 4.143 25 N 0.579 4.421 26 O -0.360 6.360 27 O -0.388 6.388 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.214 0.786 39 H 0.213 0.787 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.590 -10.640 -9.333 16.556 hybrid contribution -0.190 0.487 -0.858 1.005 sum 8.401 -10.153 -10.192 16.659 Atomic orbital electron populations 1.22826 0.73721 1.07425 1.05419 1.43699 1.08239 1.02723 1.51024 1.20911 0.89965 0.88047 1.08476 1.16739 0.85945 0.82405 0.78443 1.90788 1.16106 1.83634 1.49734 1.47710 1.05429 1.08065 1.68127 1.19872 0.96115 0.74987 0.99126 1.21241 1.45319 0.98781 0.92315 0.90407 1.24811 0.94291 0.97968 0.95506 1.69880 1.43467 1.20258 1.19212 0.86897 0.79483 0.81026 0.82600 1.19812 1.20840 1.18930 1.20763 0.81629 1.05146 0.88161 1.23032 1.03938 0.85079 0.97741 1.21691 1.02187 1.00793 0.95536 1.21831 1.06375 0.95070 1.00235 1.24179 0.98516 0.98958 0.89825 1.84589 1.59076 1.34683 1.27384 1.22728 0.96469 0.93976 1.05493 1.20824 0.93105 0.96001 1.02125 1.20812 0.90849 0.78062 1.24553 1.42525 1.00648 1.01305 0.97573 1.94558 1.52341 1.35415 1.53726 1.94536 0.99370 1.90061 1.54831 0.89332 0.86019 0.88191 0.94305 0.94008 0.92295 0.85683 0.87530 0.83191 0.83714 0.78592 0.78721 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 10.09 59.85 0.60 1.23 16 2 N -0.38 -5.78 3.16 -116.62 -0.37 -6.15 16 3 C 0.05 0.75 6.74 -81.98 -0.55 0.20 16 4 C 0.58 11.06 7.56 -12.85 -0.10 10.97 16 5 O -0.53 -11.64 14.15 5.19 0.07 -11.56 16 6 N -0.56 -10.42 2.47 -177.98 -0.44 -10.86 16 7 C 0.22 4.79 4.20 -5.20 -0.02 4.77 16 8 C -0.54 -14.12 9.94 -34.44 -0.34 -14.46 16 9 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 12 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 16 C 0.17 2.30 5.48 -5.19 -0.03 2.28 16 17 C -0.05 -0.60 5.97 -35.62 -0.21 -0.82 16 18 C -0.18 -2.22 10.81 -39.70 -0.43 -2.65 16 19 C -0.22 -2.30 10.91 -39.70 -0.43 -2.73 16 20 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 21 O -0.16 -1.94 6.78 5.72 0.04 -1.90 16 22 C -0.16 -2.10 6.29 -39.12 -0.25 -2.35 16 23 C -0.09 -1.12 10.46 -39.98 -0.42 -1.54 16 24 C 0.05 0.76 7.87 -144.05 -1.13 -0.37 16 25 N 0.06 0.94 4.45 33.00 0.15 1.09 16 26 O -0.15 -2.10 19.00 -29.46 -0.56 -2.66 16 27 O -0.18 -2.70 16.78 -29.46 -0.49 -3.19 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.12 1.83 5.92 -51.93 -0.31 1.53 16 30 H 0.10 1.23 6.50 -51.93 -0.34 0.89 16 31 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 32 H 0.04 0.99 6.84 -51.93 -0.36 0.64 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.13 1.62 8.01 -51.93 -0.42 1.20 16 35 H 0.11 1.28 4.95 -51.93 -0.26 1.02 16 36 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.20 2.24 2.59 -53.05 -0.14 2.11 16 40 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.98 341.53 -7.29 -39.27 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.88 Total: 4.11 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.05 Total: -3.57 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.11 Total: -41.04 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.94 Total: -19.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.98 -7.29 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343875813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.809 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds