Wall clock time and date at job start Tue Mar 31 2020 17:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00128 * 2 1 4 4 C 1.50697 * 109.47570 * 269.99754 * 3 2 1 5 5 N 1.30100 * 126.23478 * 90.01870 * 4 3 2 6 6 N 1.28648 * 109.50675 * 179.97438 * 5 4 3 7 7 C 1.30862 * 109.34104 * 0.02562 * 6 5 4 8 8 O 1.35420 * 126.35670 * 180.02562 * 7 6 5 9 9 O 1.34516 * 107.30021 * 359.77427 * 7 6 5 10 10 C 1.34775 * 119.99968 * 179.97438 * 2 1 3 11 11 O 1.21280 * 120.00014 * 180.02562 * 10 2 1 12 12 C 1.50697 * 120.00040 * 0.02562 * 10 2 1 13 13 C 1.50695 * 109.47436 * 179.97438 * 12 10 2 14 14 C 1.38300 * 119.93634 * 269.73208 * 13 12 10 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47529 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47049 * 119.99936 * 22 20 18 25 25 H 1.48497 * 109.46877 * 239.99598 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47905 * 270.00246 * 1 2 3 29 29 H 1.09006 * 109.47120 * 30.00473 * 1 2 3 30 30 H 1.09000 * 109.47383 * 149.99714 * 1 2 3 31 31 H 1.08998 * 109.47439 * 29.99934 * 3 2 1 32 32 H 1.09003 * 109.47111 * 149.99714 * 3 2 1 33 33 H 0.96701 * 113.99588 * 89.97267 * 8 7 6 34 34 H 1.08999 * 109.47119 * 60.00120 * 12 10 2 35 35 H 1.09004 * 109.47334 * 300.00265 * 12 10 2 36 36 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 37 37 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 38 38 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 39 39 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 40 40 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 7 1.6684 2.4508 -2.1457 6 7 2.1947 2.6217 -3.3071 7 6 3.3364 1.9848 -3.3635 8 8 4.1760 1.9343 -4.4248 9 8 3.5243 1.3940 -2.1697 10 6 2.1388 -1.1672 0.0005 11 8 3.3516 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0005 13 6 2.3646 -3.6177 0.0005 14 6 2.8088 -4.1460 -1.1979 15 6 3.7105 -5.1919 -1.2013 16 6 4.1623 -5.7211 0.0007 17 8 5.0437 -6.7535 0.0008 18 6 5.5289 -7.1441 1.1966 19 1 5.1526 -6.6961 2.1044 20 6 6.5108 -8.1209 1.2608 21 7 6.9695 -8.6663 0.1550 22 14 7.1824 -8.6625 2.9176 23 1 6.5066 -7.9010 3.9987 24 1 6.9315 -10.1144 3.1029 25 1 8.6436 -8.4022 2.9684 26 6 3.7100 -5.1922 1.2026 27 6 2.8125 -4.1426 1.1992 28 1 -0.3635 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.8362 2.6407 -4.4380 34 1 0.7591 -2.5302 -0.8897 35 1 0.7583 -2.5298 0.8903 36 1 2.4531 -3.7374 -2.1323 37 1 4.0603 -5.6011 -2.1375 38 1 7.6562 -9.3499 0.1999 39 1 4.0592 -5.6019 2.1388 40 1 2.4607 -3.7305 2.1335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808099721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:41 Heat of formation + Delta-G solvation = -17.638886 kcal Electronic energy + Delta-G solvation = -27408.032271 eV Core-core repulsion = 23192.292042 eV Total energy + Delta-G solvation = -4215.740230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.55530 -40.19330 -38.87894 -38.45830 -36.67045 -36.59663 -35.87103 -32.66003 -32.13344 -31.03369 -30.14613 -28.42386 -27.07856 -25.95245 -25.00362 -23.97183 -23.09259 -21.97005 -20.90693 -20.07853 -19.39429 -18.08671 -17.97772 -17.34959 -17.12834 -16.92953 -16.42684 -16.31233 -15.41766 -14.92520 -14.62380 -14.45643 -14.16949 -13.78033 -13.61976 -13.40404 -13.28589 -13.13115 -12.90690 -12.83640 -12.72138 -12.62208 -12.45300 -12.31675 -11.88681 -11.53472 -11.32894 -11.27224 -10.86382 -10.75358 -10.59976 -10.41400 -10.17020 -9.74872 -9.31348 -9.24025 -8.81670 -8.14622 -7.16248 -6.43755 -4.02304 0.56855 1.31516 1.83462 2.24022 2.26070 2.50242 2.79378 3.12928 3.14586 3.15575 3.20145 3.85152 3.97748 4.35495 4.56059 4.72016 4.76774 4.79270 4.82560 4.93635 5.07376 5.10015 5.16603 5.25561 5.27138 5.32435 5.37918 5.63400 5.72200 5.84529 5.97520 6.22393 6.42333 6.45805 6.69805 6.90214 6.99289 7.08215 7.25011 7.36906 7.45807 7.81927 7.84244 8.01585 8.02997 9.02015 9.72569 10.74461 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002403 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.989187 B =11650.542048 C =12387.739824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.624 5.624 3 C 0.211 3.789 4 C 0.163 3.837 5 N -0.266 5.266 6 N -0.273 5.273 7 C 0.337 3.663 8 O -0.401 6.401 9 O -0.221 6.221 10 C 0.510 3.490 11 O -0.505 6.505 12 C -0.075 4.075 13 C -0.175 4.175 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.158 3.842 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.055 4.055 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.420 0.580 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 21.663 -0.280 24.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.361 5.361 3 C 0.085 3.915 4 C -0.050 4.050 5 N -0.117 5.117 6 N -0.134 5.134 7 C 0.088 3.912 8 O -0.208 6.208 9 O -0.102 6.102 10 C 0.299 3.701 11 O -0.377 6.377 12 C -0.115 4.115 13 C -0.176 4.176 14 C -0.077 4.077 15 C -0.210 4.210 16 C 0.104 3.896 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.252 4.252 27 C -0.073 4.073 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.281 0.719 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.361 21.495 -1.091 24.820 hybrid contribution 1.791 -0.498 0.919 2.073 sum -10.570 20.997 -0.172 23.508 Atomic orbital electron populations 1.21949 0.78241 1.04117 1.02548 1.48102 1.07615 1.04635 1.75755 1.19849 1.01123 0.87483 0.83024 1.28525 0.82512 0.96098 0.97835 1.74420 1.24290 1.15308 0.97644 1.74913 1.06235 1.19083 1.13206 1.24507 0.92029 0.93185 0.81477 1.85034 1.47333 1.56051 1.32353 1.85010 1.42477 1.59594 1.23090 1.21376 0.88572 0.85139 0.75062 1.90776 1.13862 1.86776 1.46279 1.20436 0.97488 0.89555 1.03974 1.18627 1.04997 1.00177 0.93783 1.20393 0.95945 0.95143 0.96260 1.20153 1.03718 1.00905 0.96258 1.19380 0.89609 0.87358 0.93259 1.83976 1.50482 1.40641 1.33021 1.21382 1.20539 1.21647 0.83120 0.89003 1.25296 0.95860 0.96136 0.99280 1.70052 1.27333 1.25461 1.26940 0.85644 0.78905 0.78704 0.80151 1.19092 1.20145 1.20150 1.21108 1.03944 1.01711 0.98409 1.20497 0.95699 0.95028 0.96080 0.91658 0.90396 0.90359 0.85126 0.86273 0.71942 0.88855 0.88559 0.87566 0.86550 0.92084 0.85532 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.24 59.84 0.61 1.03 16 2 N -0.62 -5.77 2.86 -182.96 -0.52 -6.29 16 3 C 0.21 1.72 6.03 -5.20 -0.03 1.69 16 4 C 0.16 1.78 8.06 -13.02 -0.10 1.67 16 5 N -0.27 -3.12 12.21 32.58 0.40 -2.72 16 6 N -0.27 -3.40 12.25 29.24 0.36 -3.04 16 7 C 0.34 3.85 9.79 52.35 0.51 4.36 16 8 O -0.40 -3.36 13.63 -41.04 -0.56 -3.92 16 9 O -0.22 -2.83 10.89 -18.99 -0.21 -3.04 16 10 C 0.51 6.73 7.67 -10.99 -0.08 6.64 16 11 O -0.50 -9.05 15.61 5.56 0.09 -8.96 16 12 C -0.07 -0.91 4.38 -29.04 -0.13 -1.03 16 13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.47 16 14 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 15 C -0.19 -4.22 9.99 -39.39 -0.39 -4.62 16 16 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 17 O -0.18 -5.19 9.76 0.07 0.00 -5.19 16 18 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 27 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 30 H 0.08 0.40 6.44 -51.93 -0.33 0.07 16 31 H 0.13 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.12 1.04 7.42 -51.93 -0.39 0.65 16 33 H 0.42 0.78 9.06 45.56 0.41 1.20 16 34 H 0.09 0.94 7.34 -51.93 -0.38 0.55 16 35 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -38.56 358.40 -3.91 -42.47 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.34 Total: 2.77 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.27 Total: -8.32 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.99 Total: -36.95 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.68 Total: -21.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.56 -3.91 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808099721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds