Wall clock time and date at job start Tue Mar 31 2020 18:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00097 * 2 1 4 4 C 1.50703 * 109.47395 * 275.00479 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 S 1.65610 * 119.99979 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.39850 * 23.53338 * 12 2 1 14 14 O 1.42096 * 106.39929 * 156.45689 * 12 2 1 15 15 N 1.65597 * 107.21530 * 269.99712 * 12 2 1 16 16 C 1.46816 * 120.33168 * 269.71996 * 15 12 2 17 17 C 1.53016 * 109.63886 * 231.85636 * 16 15 12 18 18 C 1.52732 * 108.67860 * 306.64507 * 17 16 15 19 19 H 1.09003 * 109.41249 * 302.69602 * 18 17 16 20 20 C 1.52831 * 110.76502 * 181.42247 * 18 17 16 21 21 O 1.45608 * 107.26293 * 178.05193 * 20 18 17 22 22 C 1.34114 * 117.97919 * 43.75207 * 21 20 18 23 23 O 1.21510 * 118.22372 * 165.39023 * 22 21 20 24 24 N 1.34116 * 123.55461 * 345.37497 * 22 21 20 25 25 C 1.45598 * 121.78584 * 3.95479 * 24 22 21 26 26 H 1.08997 * 109.00945 * 94.87547 * 25 24 22 27 27 C 1.47227 * 120.33501 * 90.00041 * 15 12 2 28 28 H 1.08996 * 109.47311 * 89.99845 * 1 2 3 29 29 H 1.09007 * 109.46980 * 209.99766 * 1 2 3 30 30 H 1.08999 * 109.46910 * 329.98971 * 1 2 3 31 31 H 1.09005 * 109.47411 * 155.00413 * 3 2 1 32 32 H 1.08998 * 109.46900 * 35.00492 * 3 2 1 33 33 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 34 34 H 1.09006 * 109.47979 * 351.89504 * 16 15 12 35 35 H 1.08996 * 109.47789 * 111.93036 * 16 15 12 36 36 H 1.09000 * 109.68125 * 186.82777 * 17 16 15 37 37 H 1.08996 * 109.61647 * 66.42286 * 17 16 15 38 38 H 1.09001 * 109.83023 * 58.76437 * 20 18 17 39 39 H 1.08999 * 110.30248 * 297.61185 * 20 18 17 40 40 H 0.97000 * 119.10644 * 183.92381 * 24 22 21 41 41 H 1.09000 * 109.76701 * 246.65744 * 27 15 12 42 42 H 1.08997 * 109.76560 * 7.43227 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2331 6 6 3.0006 2.9504 -1.6663 7 7 3.5034 3.6469 -0.6705 8 14 3.1783 3.5669 -3.4207 9 1 2.5298 2.6076 -4.3506 10 1 4.6191 3.6870 -3.7596 11 1 2.5277 4.8958 -3.5467 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8593 1.5810 16 6 3.7483 -1.4212 2.2875 17 6 4.4320 -2.6281 2.9334 18 6 3.4094 -3.3668 3.7944 19 1 2.9988 -2.6822 4.5367 20 6 4.0529 -4.5647 4.4921 21 8 3.0291 -5.1817 5.3235 22 6 1.8046 -5.3403 4.7999 23 8 1.0288 -6.0836 5.3674 24 7 1.3898 -4.7226 3.6840 25 6 2.2806 -3.8825 2.8962 26 1 2.7116 -4.4786 2.0918 27 6 1.5478 -2.6856 2.2909 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 3.1858 1.1177 0.4343 32 1 1.6501 2.0042 0.5895 33 1 3.4108 3.3269 0.2405 34 1 4.4326 -0.9527 1.5801 35 1 3.4773 -0.7032 3.0614 36 1 5.2599 -2.2907 3.5570 37 1 4.8067 -3.2952 2.1572 38 1 4.8815 -4.2284 5.1153 39 1 4.4128 -5.2829 3.7554 40 1 0.4717 -4.8391 3.3937 41 1 1.0797 -2.1009 3.0828 42 1 0.7883 -3.0337 1.5908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828408500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:45 Heat of formation + Delta-G solvation = -148.083571 kcal Electronic energy + Delta-G solvation = -28320.986558 eV Core-core repulsion = 24235.033773 eV Total energy + Delta-G solvation = -4085.952784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54189 -38.79766 -37.21061 -36.97276 -35.80472 -35.43611 -35.08530 -33.15821 -32.72202 -30.21543 -27.68215 -27.60929 -24.97052 -24.30023 -23.73056 -22.58646 -21.87424 -20.40867 -19.03334 -18.51587 -17.91659 -17.51817 -16.90514 -16.77538 -16.47195 -15.98075 -15.58860 -15.23115 -14.76518 -14.57990 -14.54060 -14.11425 -13.81227 -13.73137 -13.48244 -13.33106 -12.94335 -12.66938 -12.39149 -12.18532 -11.98956 -11.85502 -11.82092 -11.69657 -11.39896 -11.29584 -11.21623 -11.13134 -10.93313 -10.73352 -10.62734 -10.53034 -10.16915 -9.72476 -9.45551 -9.23106 -8.47238 -8.08018 -6.48950 -4.21292 0.84346 2.26986 2.49807 2.95988 3.25786 3.40110 3.43923 3.58000 3.78248 3.82832 3.95188 4.28295 4.41055 4.46467 4.55829 4.68127 4.73055 4.85816 4.92571 4.98299 5.15448 5.19757 5.30729 5.34025 5.38908 5.41601 5.48123 5.58726 5.82782 5.84468 5.87725 6.08998 6.25602 6.38962 6.44937 6.74813 7.02849 7.28563 7.30243 7.80512 7.89507 8.35279 8.70337 9.47597 10.89165 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.003254 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.733679 B = 8603.045759 C = 9030.015263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.992 5.992 3 C 0.248 3.752 4 C -0.609 4.609 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 1.074 2.926 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.286 1.286 12 S 2.779 3.221 13 O -0.990 6.990 14 O -0.956 6.956 15 N -1.010 6.010 16 C 0.115 3.885 17 C -0.120 4.120 18 C -0.139 4.139 19 H 0.099 0.901 20 C 0.067 3.933 21 O -0.343 6.343 22 C 0.661 3.339 23 O -0.537 6.537 24 N -0.724 5.724 25 C 0.122 3.878 26 H 0.086 0.914 27 C 0.116 3.884 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.421 0.579 41 H 0.078 0.922 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -12.338 9.841 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.834 5.834 3 C 0.125 3.875 4 C -0.649 4.649 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.545 5.545 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.212 1.212 12 S 2.788 3.212 13 O -0.974 6.974 14 O -0.939 6.939 15 N -0.848 5.848 16 C -0.010 4.010 17 C -0.159 4.159 18 C -0.159 4.159 19 H 0.117 0.883 20 C -0.007 4.007 21 O -0.255 6.255 22 C 0.414 3.586 23 O -0.422 6.422 24 N -0.392 5.392 25 C 0.015 3.985 26 H 0.104 0.896 27 C -0.011 4.011 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.260 0.740 41 H 0.096 0.904 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.423 -11.992 8.763 14.859 hybrid contribution -1.094 -0.833 0.924 1.657 sum -0.671 -12.826 9.687 16.087 Atomic orbital electron populations 1.21224 0.79722 1.01127 1.01734 1.57545 1.14405 1.22988 1.88454 1.19143 0.90343 0.79549 0.98425 1.22343 1.40295 1.09649 0.92566 0.92657 1.25814 0.92906 0.93546 1.05981 1.70782 1.43210 1.40174 1.00359 0.83469 0.76814 0.75620 0.73858 1.21413 1.21082 1.21241 1.02138 0.73576 0.72791 0.72657 1.93537 1.67360 1.60333 1.76150 1.93628 1.40424 1.84836 1.75032 1.58548 1.28722 1.64644 1.32849 1.21391 0.85817 0.95886 0.97951 1.21752 0.97227 0.97755 0.99187 1.22076 0.97036 0.97870 0.98888 0.88316 1.23550 0.88872 0.93664 0.94582 1.86642 1.19190 1.76433 1.43188 1.17884 0.81650 0.79305 0.79758 1.91041 1.50483 1.39270 1.61418 1.45326 1.16622 1.50895 1.26332 1.21398 0.90769 0.92443 0.93845 0.89637 1.21496 0.90981 0.90570 0.98067 0.92859 0.92962 0.91449 0.95617 0.95729 0.92307 0.87702 0.91063 0.89099 0.90339 0.86344 0.89995 0.74026 0.90422 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.33 59.85 0.62 2.34 16 2 N -0.99 -19.04 3.23 -123.05 -0.40 -19.44 16 3 C 0.25 5.77 4.43 -5.19 -0.02 5.75 16 4 C -0.61 -16.61 9.38 -34.44 -0.32 -16.94 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 7 N -0.91 -26.19 13.65 55.43 0.76 -25.43 16 8 Si 1.07 24.91 29.90 -169.99 -5.08 19.82 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 S 2.78 49.44 6.04 -107.50 -0.65 48.79 16 13 O -0.99 -18.49 15.78 -57.17 -0.90 -19.39 16 14 O -0.96 -20.69 15.65 -57.17 -0.89 -21.59 16 15 N -1.01 -12.48 3.36 -113.67 -0.38 -12.86 16 16 C 0.11 1.22 6.43 -3.86 -0.02 1.19 16 17 C -0.12 -0.87 5.45 -26.86 -0.15 -1.02 16 18 C -0.14 -1.00 2.06 -90.74 -0.19 -1.19 16 19 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 20 C 0.07 0.45 6.63 37.07 0.25 0.70 16 21 O -0.34 -3.72 10.45 -39.04 -0.41 -4.13 16 22 C 0.66 7.94 8.53 53.76 0.46 8.40 16 23 O -0.54 -8.52 17.96 -19.43 -0.35 -8.86 16 24 N -0.72 -6.54 5.31 -59.60 -0.32 -6.86 16 25 C 0.12 1.04 2.96 -68.39 -0.20 0.83 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 C 0.12 1.11 6.16 -3.72 -0.02 1.09 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 30 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 31 H 0.03 0.62 7.48 -51.93 -0.39 0.23 16 32 H 0.02 0.58 7.83 -51.93 -0.41 0.17 16 33 H 0.27 7.47 7.22 -40.82 -0.29 7.17 16 34 H 0.10 1.33 6.86 -51.93 -0.36 0.97 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.42 3.27 8.78 -40.82 -0.36 2.91 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.99 6.90 -51.93 -0.36 0.63 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -36.14 352.36 -9.01 -45.15 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.99 Total: -2.20 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 0.30 Total: 1.68 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.34 Total: -64.59 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -2.55 Total: -53.97 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Atomic # 16 Polarization: 49.44 SS G_CDS: -0.65 Total: 48.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.14 -9.01 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828408500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.929 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds