Wall clock time and date at job start Tue Mar 31 2020 18:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00097 * 2 1 4 4 C 1.50703 * 109.47395 * 275.00479 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 S 1.65610 * 119.99979 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.39850 * 23.53338 * 12 2 1 14 14 O 1.42096 * 106.39929 * 156.45689 * 12 2 1 15 15 N 1.65597 * 107.21530 * 269.99712 * 12 2 1 16 16 C 1.46816 * 120.33168 * 269.71996 * 15 12 2 17 17 C 1.53016 * 109.63886 * 231.85636 * 16 15 12 18 18 C 1.52732 * 108.67860 * 306.64507 * 17 16 15 19 19 H 1.09003 * 109.41249 * 302.69602 * 18 17 16 20 20 C 1.52831 * 110.76502 * 181.42247 * 18 17 16 21 21 O 1.45608 * 107.26293 * 178.05193 * 20 18 17 22 22 C 1.34114 * 117.97919 * 43.75207 * 21 20 18 23 23 O 1.21510 * 118.22372 * 165.39023 * 22 21 20 24 24 N 1.34116 * 123.55461 * 345.37497 * 22 21 20 25 25 C 1.45598 * 121.78584 * 3.95479 * 24 22 21 26 26 H 1.08997 * 109.00945 * 94.87547 * 25 24 22 27 27 C 1.47227 * 120.33501 * 90.00041 * 15 12 2 28 28 H 1.08996 * 109.47311 * 89.99845 * 1 2 3 29 29 H 1.09007 * 109.46980 * 209.99766 * 1 2 3 30 30 H 1.08999 * 109.46910 * 329.98971 * 1 2 3 31 31 H 1.09005 * 109.47411 * 155.00413 * 3 2 1 32 32 H 1.08998 * 109.46900 * 35.00492 * 3 2 1 33 33 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 34 34 H 1.09006 * 109.47979 * 351.89504 * 16 15 12 35 35 H 1.08996 * 109.47789 * 111.93036 * 16 15 12 36 36 H 1.09000 * 109.68125 * 186.82777 * 17 16 15 37 37 H 1.08996 * 109.61647 * 66.42286 * 17 16 15 38 38 H 1.09001 * 109.83023 * 58.76437 * 20 18 17 39 39 H 1.08999 * 110.30248 * 297.61185 * 20 18 17 40 40 H 0.97000 * 119.10644 * 183.92381 * 24 22 21 41 41 H 1.09000 * 109.76701 * 246.65744 * 27 15 12 42 42 H 1.08997 * 109.76560 * 7.43227 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2331 6 6 3.0006 2.9504 -1.6663 7 7 3.5034 3.6469 -0.6705 8 14 3.1783 3.5669 -3.4207 9 1 2.5298 2.6076 -4.3506 10 1 4.6191 3.6870 -3.7596 11 1 2.5277 4.8958 -3.5467 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8593 1.5810 16 6 3.7483 -1.4212 2.2875 17 6 4.4320 -2.6281 2.9334 18 6 3.4094 -3.3668 3.7944 19 1 2.9988 -2.6822 4.5367 20 6 4.0529 -4.5647 4.4921 21 8 3.0291 -5.1817 5.3235 22 6 1.8046 -5.3403 4.7999 23 8 1.0288 -6.0836 5.3674 24 7 1.3898 -4.7226 3.6840 25 6 2.2806 -3.8825 2.8962 26 1 2.7116 -4.4786 2.0918 27 6 1.5478 -2.6856 2.2909 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 3.1858 1.1177 0.4343 32 1 1.6501 2.0042 0.5895 33 1 3.4108 3.3269 0.2405 34 1 4.4326 -0.9527 1.5801 35 1 3.4773 -0.7032 3.0614 36 1 5.2599 -2.2907 3.5570 37 1 4.8067 -3.2952 2.1572 38 1 4.8815 -4.2284 5.1153 39 1 4.4128 -5.2829 3.7554 40 1 0.4717 -4.8391 3.3937 41 1 1.0797 -2.1009 3.0828 42 1 0.7883 -3.0337 1.5908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828408500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:44 Heat of formation + Delta-G solvation = -177.541487 kcal Electronic energy + Delta-G solvation = -28322.263949 eV Core-core repulsion = 24235.033773 eV Total energy + Delta-G solvation = -4087.230175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32044 -39.66377 -38.48067 -38.06986 -37.44340 -36.95938 -35.95324 -34.70180 -33.92943 -31.01410 -29.34775 -28.41093 -26.63120 -25.11651 -24.48466 -24.43768 -22.75386 -21.07939 -20.14944 -19.58919 -19.23343 -18.75054 -18.39173 -18.16230 -17.41134 -17.14332 -16.36467 -16.32828 -15.71933 -15.67366 -15.52620 -15.43314 -15.25441 -14.94588 -14.67832 -14.23703 -14.15099 -14.03203 -13.85576 -13.41045 -13.25682 -13.21811 -13.02026 -12.95619 -12.78305 -12.63627 -12.43197 -12.34295 -12.06937 -11.98744 -11.96299 -11.63099 -11.39784 -11.25779 -10.57960 -10.54297 -10.16500 -9.78816 -8.65753 -6.39686 -0.53064 1.46677 1.52427 1.60467 1.61968 1.77273 1.89344 2.31396 2.50346 2.55883 3.12709 3.14006 3.29517 3.31841 3.57299 3.80008 3.81884 3.95212 4.02670 4.15530 4.32036 4.41947 4.48840 4.56752 4.58013 4.66500 4.67391 4.70886 4.82754 4.84467 4.85651 4.96367 5.06290 5.20424 5.27239 5.41952 5.69809 5.72965 5.86263 6.20584 6.51077 6.55108 6.96154 7.35353 8.72506 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.003254 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.733679 B = 8603.045759 C = 9030.015263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.001 6.001 3 C 0.259 3.741 4 C -0.625 4.625 5 H 0.040 0.960 6 C -0.025 4.025 7 N -0.929 5.929 8 Si 1.111 2.889 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.271 1.271 12 S 2.793 3.207 13 O -1.002 7.002 14 O -1.001 7.001 15 N -0.998 5.998 16 C 0.106 3.894 17 C -0.111 4.111 18 C -0.133 4.133 19 H 0.105 0.895 20 C 0.065 3.935 21 O -0.357 6.357 22 C 0.663 3.337 23 O -0.584 6.584 24 N -0.709 5.709 25 C 0.123 3.877 26 H 0.088 0.912 27 C 0.111 3.889 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.426 0.574 41 H 0.099 0.901 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -12.769 10.667 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.842 5.842 3 C 0.135 3.865 4 C -0.664 4.664 5 H 0.058 0.942 6 C -0.224 4.224 7 N -0.567 5.567 8 Si 0.933 3.067 9 H -0.205 1.205 10 H -0.204 1.204 11 H -0.197 1.197 12 S 2.803 3.197 13 O -0.986 6.986 14 O -0.984 6.984 15 N -0.839 5.839 16 C -0.019 4.019 17 C -0.150 4.150 18 C -0.153 4.153 19 H 0.123 0.877 20 C -0.008 4.008 21 O -0.268 6.268 22 C 0.417 3.583 23 O -0.473 6.473 24 N -0.376 5.376 25 C 0.016 3.984 26 H 0.106 0.894 27 C -0.015 4.015 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.166 0.834 39 H 0.112 0.888 40 H 0.266 0.734 41 H 0.117 0.883 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.678 -12.414 9.569 15.689 hybrid contribution -1.167 -0.749 0.710 1.558 sum -0.489 -13.163 10.279 16.708 Atomic orbital electron populations 1.21456 0.77976 1.03449 1.01753 1.57508 1.15692 1.21852 1.89160 1.18755 0.90412 0.81196 0.96136 1.22699 1.39909 1.09648 0.94173 0.94181 1.27068 0.92486 0.94074 1.08790 1.70874 1.44528 1.40773 1.00486 0.83004 0.77299 0.76061 0.70317 1.20498 1.20437 1.19675 1.01461 0.72376 0.72257 0.73639 1.93512 1.67467 1.60236 1.77350 1.93567 1.42490 1.85369 1.77017 1.58058 1.30000 1.64573 1.31308 1.21624 0.84804 0.97915 0.97564 1.21722 0.97639 0.96209 0.99427 1.22041 0.96437 0.98171 0.98612 0.87728 1.23880 0.88332 0.93442 0.95140 1.86616 1.19250 1.76715 1.44173 1.17936 0.81746 0.78918 0.79750 1.91006 1.52039 1.41394 1.62868 1.45197 1.17001 1.50054 1.25365 1.21425 0.90919 0.91902 0.94158 0.89443 1.21722 0.90430 0.90910 0.98402 0.94055 0.89418 0.90404 0.96500 0.95872 0.92917 0.90205 0.89423 0.86074 0.90279 0.83405 0.88783 0.73365 0.88314 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.05 10.33 127.77 1.32 4.37 16 2 N -1.00 -38.20 3.23 -543.23 -1.75 -39.96 16 3 C 0.26 12.21 4.43 85.63 0.38 12.59 16 4 C -0.63 -34.56 9.38 25.60 0.24 -34.32 16 5 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 6 C -0.02 -1.38 5.46 84.65 0.46 -0.92 16 7 N -0.93 -53.90 13.65 21.45 0.29 -53.61 16 8 Si 1.11 49.91 29.90 68.60 2.05 51.96 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 S 2.79 98.38 6.04 -56.49 -0.34 98.03 16 13 O -1.00 -36.64 15.78 -128.00 -2.02 -38.66 16 14 O -1.00 -44.11 15.65 -128.00 -2.00 -46.11 16 15 N -1.00 -23.07 3.36 -513.55 -1.73 -24.80 16 16 C 0.11 2.05 6.43 86.32 0.56 2.60 16 17 C -0.11 -1.26 5.45 30.51 0.17 -1.09 16 18 C -0.13 -1.47 2.06 -10.87 -0.02 -1.49 16 19 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 20 C 0.06 0.64 6.63 71.93 0.48 1.12 16 21 O -0.36 -6.93 10.45 -50.22 -0.52 -7.46 16 22 C 0.66 14.96 8.53 129.89 1.11 16.06 16 23 O -0.58 -18.31 17.96 19.95 0.36 -17.95 16 24 N -0.71 -11.39 5.31 -573.88 -3.05 -14.43 16 25 C 0.12 1.76 2.96 45.18 0.13 1.89 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 C 0.11 1.85 6.16 86.19 0.53 2.39 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.04 7.79 -2.38 -0.02 2.02 16 30 H 0.08 2.21 7.94 -2.39 -0.02 2.19 16 31 H 0.02 0.83 7.48 -2.38 -0.02 0.81 16 32 H 0.02 1.10 7.83 -2.39 -0.02 1.08 16 33 H 0.26 14.86 7.22 -92.71 -0.67 14.19 16 34 H 0.08 2.01 6.86 -2.38 -0.02 1.99 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.43 5.90 8.78 -92.71 -0.81 5.09 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.75 6.90 -2.39 -0.02 1.73 16 Total: -1.00 -79.63 352.36 -3.03 -82.66 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.33 Total: 7.12 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.35 Total: 3.20 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -6.24 Total: -132.80 kcal Atomic # 8 Polarization: -105.99 SS G_CDS: -4.19 Total: -110.18 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Atomic # 16 Polarization: 98.38 SS G_CDS: -0.34 Total: 98.03 kcal Total: -79.63 -3.03 -82.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828408500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.878 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds