Wall clock time and date at job start Tue Mar 31 2020 17:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47096 * 86.90423 * 3 2 1 5 5 C 1.52997 * 109.47043 * 206.90232 * 3 2 1 6 6 C 1.53002 * 109.47292 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47009 * 299.99943 * 6 5 3 8 8 H 1.09002 * 109.47000 * 299.99541 * 7 6 5 9 9 N 1.46493 * 109.47057 * 180.02562 * 7 6 5 10 10 S 1.65603 * 120.00325 * 93.74983 * 9 7 6 11 11 O 1.42095 * 106.40407 * 311.45346 * 10 9 7 12 12 O 1.42106 * 106.40251 * 178.53023 * 10 9 7 13 13 C 1.76200 * 107.21477 * 64.99566 * 10 9 7 14 14 C 1.37643 * 120.12413 * 244.88831 * 13 10 9 15 15 C 1.38623 * 120.24625 * 180.27697 * 14 13 10 16 16 C 1.38657 * 120.49975 * 359.74400 * 15 14 13 17 17 C 1.37594 * 120.24878 * 359.97438 * 16 15 14 18 18 C 1.40692 * 120.13316 * 64.65456 * 13 10 9 19 19 C 1.41404 * 120.24253 * 0.02562 * 18 13 10 20 20 H 1.08001 * 119.99547 * 330.34026 * 19 18 13 21 21 C 1.39943 * 120.00098 * 150.33346 * 19 18 13 22 22 N 1.30819 * 120.00157 * 348.08580 * 21 19 18 23 23 Si 1.86798 * 119.99743 * 168.08083 * 21 19 18 24 24 H 1.48498 * 109.47141 * 90.00358 * 23 21 19 25 25 H 1.48499 * 109.47015 * 210.00219 * 23 21 19 26 26 H 1.48497 * 109.47224 * 330.00171 * 23 21 19 27 27 C 1.52997 * 109.47048 * 59.99907 * 7 6 5 28 28 C 1.52998 * 109.47279 * 326.90188 * 3 2 1 29 29 H 4.18734 * 15.03877 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47108 * 300.00041 * 5 3 2 31 31 H 1.09002 * 109.47530 * 59.99590 * 5 3 2 32 32 H 1.08998 * 109.47074 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47117 * 60.00026 * 6 5 3 34 34 H 0.97005 * 120.00338 * 273.75381 * 9 7 6 35 35 H 1.07997 * 119.88060 * 0.02562 * 14 13 10 36 36 H 1.07995 * 119.74841 * 179.76331 * 15 14 13 37 37 H 1.07994 * 119.87344 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.12827 * 180.02562 * 17 16 15 39 39 H 0.96999 * 120.00367 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.47030 * 60.00511 * 27 7 6 41 41 H 1.08999 * 109.46615 * 180.02562 * 27 7 6 42 42 H 1.08998 * 109.47287 * 60.00166 * 28 3 2 43 43 H 1.09002 * 109.47000 * 299.99681 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.0547 -1.0262 5 6 3.1554 1.2873 0.6527 6 6 4.6854 1.2883 0.6521 7 6 5.1965 0.0801 1.4395 8 1 4.8335 0.1353 2.4658 9 7 6.6614 0.0814 1.4395 10 16 7.4889 0.7847 2.6898 11 8 6.9069 2.0661 2.8856 12 8 8.8699 0.5919 2.4157 13 6 7.1344 -0.1499 4.1408 14 6 6.4446 0.4271 5.1828 15 6 6.1693 -0.3041 6.3279 16 6 6.5798 -1.6242 6.4355 17 6 7.2656 -2.2231 5.4040 18 6 7.5510 -1.4903 4.2369 19 6 8.2565 -2.0950 3.1710 20 1 8.0833 -1.7700 2.1557 21 6 9.1792 -3.1144 3.4317 22 7 9.5636 -3.3504 4.6596 23 14 9.8617 -4.1382 2.0262 24 1 11.0937 -3.4975 1.4999 25 1 10.1843 -5.5016 2.5182 26 1 8.8498 -4.2293 0.9432 27 6 4.6871 -1.2065 0.7868 28 6 3.1566 -1.2075 0.7877 29 1 -1.0500 -0.0005 0.0000 30 1 2.7917 2.1480 0.0915 31 1 2.7920 1.3427 1.6788 32 1 5.0483 2.2051 1.1167 33 1 5.0484 1.2332 -0.3742 34 1 7.1469 -0.3296 0.7071 35 1 6.1201 1.4546 5.1097 36 1 5.6309 0.1578 7.1421 37 1 6.3595 -2.1845 7.3321 38 1 7.5840 -3.2515 5.4897 39 1 10.2029 -4.0572 4.8404 40 1 5.0502 -1.2617 -0.2395 41 1 5.0508 -2.0672 1.3480 42 1 2.7937 -2.1241 0.3227 43 1 2.7933 -1.1521 1.8139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872670852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:56 Heat of formation + Delta-G solvation = -28.735499 kcal Electronic energy + Delta-G solvation = -27080.211627 eV Core-core repulsion = 23410.283427 eV Total energy + Delta-G solvation = -3669.928200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.97667 -37.59664 -36.19342 -34.85725 -34.80105 -33.88304 -32.12048 -30.75447 -30.23178 -29.57665 -28.34876 -25.54659 -22.75069 -22.63600 -21.67118 -21.15485 -20.10550 -18.55292 -18.15483 -17.69901 -16.78444 -16.42609 -15.76657 -15.38680 -14.88473 -14.55801 -14.33462 -14.19948 -14.11514 -13.30858 -13.25616 -13.06646 -12.99136 -12.76060 -12.15875 -11.95937 -11.72591 -11.71853 -11.49364 -11.27652 -11.18342 -11.11883 -11.05770 -11.00290 -10.99005 -10.81234 -10.71431 -10.54319 -10.38002 -10.03817 -9.92600 -9.90672 -9.44970 -9.40193 -8.76211 -8.04246 -7.60742 -7.03815 -4.76949 1.54919 2.33297 2.72369 2.76214 2.78399 2.95852 2.98804 3.10725 3.76341 3.90096 4.25377 4.40530 4.69402 4.75020 4.87951 5.09570 5.17422 5.27281 5.31570 5.43328 5.51313 5.54687 5.58969 5.68467 5.80065 5.97902 6.03481 6.05687 6.07943 6.18200 6.21681 6.24237 6.33387 6.39741 6.51438 6.61697 6.78126 6.93532 7.07663 7.29906 7.47921 7.55536 7.56186 7.67277 7.79607 7.88306 8.27364 8.49532 8.63800 9.89980 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.004534 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.990214 B = 6173.659412 C = 6645.978986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.171 4.171 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.107 4.107 6 C -0.139 4.139 7 C 0.161 3.839 8 H 0.085 0.915 9 N -1.117 6.117 10 S 2.699 3.301 11 O -0.996 6.996 12 O -0.966 6.966 13 C -0.775 4.775 14 C -0.004 4.004 15 C -0.249 4.249 16 C -0.077 4.077 17 C -0.157 4.157 18 C 0.189 3.811 19 C -0.448 4.448 20 H 0.087 0.913 21 C 0.081 3.919 22 N -0.777 5.777 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.256 1.256 27 C -0.125 4.125 28 C -0.107 4.107 29 H 0.214 0.786 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.287 0.713 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 0.883 -7.884 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.171 4.171 3 C -0.002 4.002 4 H 0.110 0.890 5 C -0.145 4.145 6 C -0.178 4.178 7 C 0.053 3.947 8 H 0.103 0.897 9 N -0.872 5.872 10 S 2.796 3.204 11 O -0.987 6.987 12 O -0.956 6.956 13 C -0.870 4.870 14 C -0.024 4.024 15 C -0.270 4.270 16 C -0.095 4.095 17 C -0.177 4.177 18 C 0.184 3.816 19 C -0.476 4.476 20 H 0.105 0.895 21 C -0.140 4.140 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.179 1.179 27 C -0.164 4.164 28 C -0.146 4.146 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.831 1.586 -7.689 12.581 hybrid contribution 0.028 -1.286 -0.234 1.307 sum -9.803 0.300 -7.924 12.608 Atomic orbital electron populations 1.24844 0.95877 1.01397 1.01774 1.23205 0.94371 0.99807 0.99694 1.18462 0.83981 0.96787 1.00960 0.89026 1.21524 0.95598 0.95935 1.01464 1.22141 0.94440 0.99872 1.01366 1.20603 0.79301 0.94478 1.00284 0.89656 1.55781 1.14448 1.77422 1.39577 1.01159 0.72797 0.72993 0.73441 1.93445 1.79375 1.39261 1.86603 1.93544 1.30951 1.86474 1.84673 1.29906 1.28522 1.08872 1.19693 1.20267 0.92531 0.97224 0.92378 1.20494 1.11360 0.96098 0.99030 1.20899 0.96723 0.94721 0.97206 1.21475 1.01045 1.00414 0.94768 1.16987 0.84843 0.87598 0.92179 1.19824 1.17722 1.15193 0.94878 0.89483 1.25932 0.95090 0.95953 0.97017 1.69776 1.23457 1.25850 1.20951 0.86195 0.80402 0.78586 0.81129 1.18686 1.19834 1.17948 1.21858 0.94521 0.98326 1.01670 1.21539 0.95440 0.96746 1.00833 0.76882 0.91458 0.91159 0.89843 0.91416 0.75634 0.87430 0.88761 0.88847 0.85934 0.90149 0.91284 0.89917 0.91339 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.25 19.25 29.55 0.57 -1.68 16 2 C -0.17 -1.94 12.56 -37.12 -0.47 -2.41 16 3 C 0.02 0.17 2.56 -93.41 -0.24 -0.07 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.11 -1.20 5.16 -26.73 -0.14 -1.34 16 6 C -0.14 -1.77 5.53 -26.73 -0.15 -1.92 16 7 C 0.16 2.32 2.65 -67.94 -0.18 2.14 16 8 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 9 N -1.12 -18.61 4.59 -4.90 -0.02 -18.63 16 10 S 2.70 57.74 4.88 -107.50 -0.52 57.21 16 11 O -1.00 -21.99 16.10 -57.17 -0.92 -22.91 16 12 O -0.97 -23.82 16.62 -57.17 -0.95 -24.77 16 13 C -0.77 -18.18 5.78 -38.87 -0.22 -18.40 16 14 C 0.00 -0.09 9.54 -39.66 -0.38 -0.47 16 15 C -0.25 -5.39 10.05 -39.28 -0.39 -5.79 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 17 C -0.16 -3.82 8.65 -38.87 -0.34 -4.16 16 18 C 0.19 4.70 5.54 -106.82 -0.59 4.11 16 19 C -0.45 -10.94 7.62 -37.74 -0.29 -11.23 16 20 H 0.09 1.96 5.78 -52.49 -0.30 1.66 16 21 C 0.08 1.92 5.23 -17.34 -0.09 1.83 16 22 N -0.78 -18.94 10.95 55.55 0.61 -18.33 16 23 Si 0.91 17.63 29.58 -169.99 -5.03 12.60 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 27 C -0.12 -1.53 5.45 -26.71 -0.15 -1.67 16 28 C -0.11 -1.19 5.16 -26.71 -0.14 -1.33 16 29 H 0.21 1.42 7.80 -54.09 -0.42 1.00 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 6.04 8.55 -34.47 -0.29 5.74 16 35 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.12 3.01 6.32 -52.49 -0.33 2.68 16 39 H 0.29 6.30 8.30 -40.82 -0.34 5.97 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.20 365.44 -10.81 -41.01 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -5.90 Total: 12.78 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: -3.59 Total: -44.48 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.59 Total: -36.96 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.87 Total: -47.68 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 57.74 SS G_CDS: -0.52 Total: 57.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.20 -10.81 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872670852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.274 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds