Wall clock time and date at job start Tue Mar 31 2020 17:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47096 * 86.90423 * 3 2 1 5 5 C 1.52997 * 109.47043 * 206.90232 * 3 2 1 6 6 C 1.53002 * 109.47292 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47009 * 299.99943 * 6 5 3 8 8 H 1.09002 * 109.47000 * 299.99541 * 7 6 5 9 9 N 1.46493 * 109.47057 * 180.02562 * 7 6 5 10 10 S 1.65603 * 120.00325 * 93.74983 * 9 7 6 11 11 O 1.42095 * 106.40407 * 311.45346 * 10 9 7 12 12 O 1.42106 * 106.40251 * 178.53023 * 10 9 7 13 13 C 1.76200 * 107.21477 * 64.99566 * 10 9 7 14 14 C 1.37643 * 120.12413 * 244.88831 * 13 10 9 15 15 C 1.38623 * 120.24625 * 180.27697 * 14 13 10 16 16 C 1.38657 * 120.49975 * 359.74400 * 15 14 13 17 17 C 1.37594 * 120.24878 * 359.97438 * 16 15 14 18 18 C 1.40692 * 120.13316 * 64.65456 * 13 10 9 19 19 C 1.41404 * 120.24253 * 0.02562 * 18 13 10 20 20 H 1.08001 * 119.99547 * 330.34026 * 19 18 13 21 21 C 1.39943 * 120.00098 * 150.33346 * 19 18 13 22 22 N 1.30819 * 120.00157 * 348.08580 * 21 19 18 23 23 Si 1.86798 * 119.99743 * 168.08083 * 21 19 18 24 24 H 1.48498 * 109.47141 * 90.00358 * 23 21 19 25 25 H 1.48499 * 109.47015 * 210.00219 * 23 21 19 26 26 H 1.48497 * 109.47224 * 330.00171 * 23 21 19 27 27 C 1.52997 * 109.47048 * 59.99907 * 7 6 5 28 28 C 1.52998 * 109.47279 * 326.90188 * 3 2 1 29 29 H 4.18734 * 15.03877 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47108 * 300.00041 * 5 3 2 31 31 H 1.09002 * 109.47530 * 59.99590 * 5 3 2 32 32 H 1.08998 * 109.47074 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47117 * 60.00026 * 6 5 3 34 34 H 0.97005 * 120.00338 * 273.75381 * 9 7 6 35 35 H 1.07997 * 119.88060 * 0.02562 * 14 13 10 36 36 H 1.07995 * 119.74841 * 179.76331 * 15 14 13 37 37 H 1.07994 * 119.87344 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.12827 * 180.02562 * 17 16 15 39 39 H 0.96999 * 120.00367 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.47030 * 60.00511 * 27 7 6 41 41 H 1.08999 * 109.46615 * 180.02562 * 27 7 6 42 42 H 1.08998 * 109.47287 * 60.00166 * 28 3 2 43 43 H 1.09002 * 109.47000 * 299.99681 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.0547 -1.0262 5 6 3.1554 1.2873 0.6527 6 6 4.6854 1.2883 0.6521 7 6 5.1965 0.0801 1.4395 8 1 4.8335 0.1353 2.4658 9 7 6.6614 0.0814 1.4395 10 16 7.4889 0.7847 2.6898 11 8 6.9069 2.0661 2.8856 12 8 8.8699 0.5919 2.4157 13 6 7.1344 -0.1499 4.1408 14 6 6.4446 0.4271 5.1828 15 6 6.1693 -0.3041 6.3279 16 6 6.5798 -1.6242 6.4355 17 6 7.2656 -2.2231 5.4040 18 6 7.5510 -1.4903 4.2369 19 6 8.2565 -2.0950 3.1710 20 1 8.0833 -1.7700 2.1557 21 6 9.1792 -3.1144 3.4317 22 7 9.5636 -3.3504 4.6596 23 14 9.8617 -4.1382 2.0262 24 1 11.0937 -3.4975 1.4999 25 1 10.1843 -5.5016 2.5182 26 1 8.8498 -4.2293 0.9432 27 6 4.6871 -1.2065 0.7868 28 6 3.1566 -1.2075 0.7877 29 1 -1.0500 -0.0005 0.0000 30 1 2.7917 2.1480 0.0915 31 1 2.7920 1.3427 1.6788 32 1 5.0483 2.2051 1.1167 33 1 5.0484 1.2332 -0.3742 34 1 7.1469 -0.3296 0.7071 35 1 6.1201 1.4546 5.1097 36 1 5.6309 0.1578 7.1421 37 1 6.3595 -2.1845 7.3321 38 1 7.5840 -3.2515 5.4897 39 1 10.2029 -4.0572 4.8404 40 1 5.0502 -1.2617 -0.2395 41 1 5.0508 -2.0672 1.3480 42 1 2.7937 -2.1241 0.3227 43 1 2.7933 -1.1521 1.8139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872670852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:55 Heat of formation + Delta-G solvation = -46.047280 kcal Electronic energy + Delta-G solvation = -27080.962322 eV Core-core repulsion = 23410.283427 eV Total energy + Delta-G solvation = -3670.678896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.98951 -39.36128 -37.97670 -36.62984 -35.97450 -35.61876 -33.10188 -32.01427 -31.70059 -31.35735 -29.40956 -27.33603 -23.78665 -23.60641 -23.42198 -22.92657 -21.16854 -20.14595 -19.47796 -18.94795 -18.40848 -17.92132 -17.30987 -17.04081 -16.15079 -16.00915 -15.62248 -15.40153 -15.14145 -15.03090 -14.92387 -14.45448 -14.15843 -14.13441 -13.68240 -13.28168 -13.16606 -13.04889 -12.96366 -12.87816 -12.82148 -12.76159 -12.66538 -12.45785 -12.13537 -12.05106 -12.00378 -11.87808 -11.64092 -11.44212 -11.17770 -11.13086 -10.87023 -10.78289 -10.14447 -9.82970 -9.41837 -8.78043 -6.59768 -0.12932 0.54238 0.98033 1.38241 1.50014 1.54160 1.95927 1.99208 2.17153 2.36338 2.65140 3.01682 3.45304 3.50722 3.75022 3.86571 3.90764 4.19764 4.20236 4.32427 4.34658 4.38873 4.50036 4.54896 4.60111 4.64322 4.72513 4.87556 4.93600 4.99743 5.15038 5.18099 5.22859 5.24206 5.25500 5.30623 5.38915 5.48945 5.53103 5.56369 5.71453 5.82900 6.00593 6.09308 6.30325 6.48394 6.69445 6.78626 6.84458 8.18845 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.004534 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.990214 B = 6173.659412 C = 6645.978986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.207 4.207 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.103 4.103 6 C -0.135 4.135 7 C 0.154 3.846 8 H 0.067 0.933 9 N -1.104 6.104 10 S 2.718 3.282 11 O -1.006 7.006 12 O -1.002 7.002 13 C -0.792 4.792 14 C -0.017 4.017 15 C -0.251 4.251 16 C -0.077 4.077 17 C -0.184 4.184 18 C 0.165 3.835 19 C -0.475 4.475 20 H 0.096 0.904 21 C 0.039 3.961 22 N -0.811 5.811 23 Si 0.975 3.025 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.239 1.239 27 C -0.119 4.119 28 C -0.103 4.103 29 H 0.242 0.758 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.421 0.579 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.294 0.706 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 0.561 -9.422 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.207 4.207 3 C 0.003 3.997 4 H 0.125 0.875 5 C -0.141 4.141 6 C -0.174 4.174 7 C 0.047 3.953 8 H 0.085 0.915 9 N -0.864 5.864 10 S 2.814 3.186 11 O -0.996 6.996 12 O -0.992 6.992 13 C -0.886 4.886 14 C -0.037 4.037 15 C -0.271 4.271 16 C -0.095 4.095 17 C -0.204 4.204 18 C 0.160 3.840 19 C -0.503 4.503 20 H 0.114 0.886 21 C -0.179 4.179 22 N -0.435 5.435 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.162 1.162 27 C -0.158 4.158 28 C -0.141 4.141 29 H 0.259 0.741 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.257 0.743 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.378 1.262 -9.203 14.689 hybrid contribution 0.391 -1.102 0.314 1.210 sum -10.988 0.160 -8.889 14.134 Atomic orbital electron populations 1.25650 0.96805 0.99877 1.00444 1.23495 0.95015 1.01216 1.00990 1.18399 0.84053 0.95747 1.01483 0.87469 1.21478 0.94270 0.97091 1.01238 1.22083 0.95552 0.97847 1.01896 1.20843 0.77610 0.96746 1.00100 0.91469 1.55381 1.15500 1.77161 1.38313 1.00446 0.72030 0.72711 0.73440 1.93425 1.79356 1.39866 1.86956 1.93488 1.33606 1.86949 1.85205 1.30229 1.28357 1.08759 1.21251 1.20580 0.92515 0.98037 0.92583 1.20884 1.10782 0.95894 0.99534 1.21238 0.95508 0.95237 0.97543 1.21540 1.02689 1.00329 0.95879 1.17296 0.85484 0.88333 0.92843 1.20145 1.18513 1.16334 0.95323 0.88563 1.26820 0.95042 0.96630 0.99411 1.69824 1.24268 1.26672 1.22729 0.85299 0.79610 0.77263 0.78449 1.19292 1.18582 1.16189 1.21813 0.95392 0.96214 1.02362 1.21492 0.94309 0.97804 1.00481 0.74120 0.90195 0.92252 0.91785 0.89364 0.74286 0.86121 0.85633 0.86078 0.86977 0.89466 0.89053 0.91423 0.90084 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.75 19.25 74.32 1.43 -2.32 16 2 C -0.21 -4.28 12.56 31.13 0.39 -3.89 16 3 C 0.02 0.41 2.56 -12.60 -0.03 0.37 16 4 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.10 -2.16 5.16 30.59 0.16 -2.00 16 6 C -0.13 -3.26 5.53 30.59 0.17 -3.09 16 7 C 0.15 4.36 2.65 44.99 0.12 4.48 16 8 H 0.07 2.14 7.85 -2.39 -0.02 2.13 16 9 N -1.10 -36.49 4.59 -169.40 -0.78 -37.27 16 10 S 2.72 117.72 4.88 -56.49 -0.28 117.44 16 11 O -1.01 -44.66 16.10 -128.00 -2.06 -46.72 16 12 O -1.00 -50.32 16.62 -128.00 -2.13 -52.45 16 13 C -0.79 -37.83 5.78 22.73 0.13 -37.70 16 14 C -0.02 -0.78 9.54 22.22 0.21 -0.57 16 15 C -0.25 -10.61 10.05 22.46 0.23 -10.39 16 16 C -0.08 -3.37 10.02 22.22 0.22 -3.15 16 17 C -0.18 -9.17 8.65 22.73 0.20 -8.97 16 18 C 0.16 8.41 5.54 -21.29 -0.12 8.29 16 19 C -0.48 -23.65 7.62 23.46 0.18 -23.47 16 20 H 0.10 4.39 5.78 -2.91 -0.02 4.38 16 21 C 0.04 1.85 5.23 85.26 0.45 2.30 16 22 N -0.81 -40.40 10.95 21.83 0.24 -40.16 16 23 Si 0.97 35.81 29.58 68.60 2.03 37.84 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 26 H -0.24 -8.05 7.11 99.48 0.71 -7.34 16 27 C -0.12 -2.76 5.45 30.61 0.17 -2.59 16 28 C -0.10 -2.12 5.16 30.61 0.16 -1.97 16 29 H 0.24 2.44 7.80 -4.42 -0.03 2.41 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.81 7.50 -2.39 -0.02 1.80 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.42 12.07 8.55 -96.74 -0.83 11.24 16 35 H 0.12 4.97 7.33 -2.91 -0.02 4.95 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.11 5.70 6.32 -2.91 -0.02 5.68 16 39 H 0.29 13.16 8.30 -92.71 -0.77 12.40 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.79 365.44 1.28 -64.51 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.19 Total: 41.46 kcal Atomic # 6 Polarization: -88.72 SS G_CDS: 4.05 Total: -84.67 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -0.54 Total: -77.43 kcal Atomic # 8 Polarization: -94.97 SS G_CDS: -4.19 Total: -99.16 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 16 Polarization: 117.72 SS G_CDS: -0.28 Total: 117.44 kcal Total: -65.79 1.28 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872670852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.465 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds